Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 25914754

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|25914754 McKusick-Kaufman syndrome protein [Homo sapiens]
         (570 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|9055272 McKusick-Kaufman syndrome protein [Homo sapiens]          1140   0.0  
gi|25914754 McKusick-Kaufman syndrome protein [Homo sapiens]         1140   0.0  
gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Hom...    76   7e-14
gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Hom...    76   9e-14
gi|38455427 chaperonin containing TCP1, subunit 4 (delta) [Homo ...    62   1e-09
gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Hom...    56   8e-08
gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Hom...    53   9e-07
gi|5453603 chaperonin containing TCP1, subunit 2 [Homo sapiens]        49   2e-05
gi|48762932 chaperonin containing TCP1, subunit 8 (theta) [Homo ...    47   4e-05
gi|7657253 T-complex protein 1 [Homo sapiens]                          41   0.003
gi|5453607 chaperonin containing TCP1, subunit 7 isoform a [Homo...    40   0.006
gi|57863257 T-complex protein 1 isoform a [Homo sapiens]               40   0.008
gi|100816407 Bardet-Biedl syndrome 10 [Homo sapiens]                   39   0.017
gi|58331185 chaperonin containing TCP1, subunit 7 isoform b [Hom...    33   0.92 
gi|57863259 T-complex protein 1 isoform b [Homo sapiens]               32   1.2  
gi|225690529 golgin, RAB6-interacting isoform a [Homo sapiens]         30   6.0  
gi|225690532 golgin, RAB6-interacting isoform b [Homo sapiens]         30   6.0  
gi|52627141 olfactory receptor, family 9, subfamily Q, member 2 ...    30   6.0  
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s...    30   7.8  
gi|239746217 PREDICTED: zinc finger protein 66 [Homo sapiens]          30   7.8  

>gi|9055272 McKusick-Kaufman syndrome protein [Homo sapiens]
          Length = 570

 Score = 1140 bits (2949), Expect = 0.0
 Identities = 570/570 (100%), Positives = 570/570 (100%)

Query: 1   MSRLEAKKPSLCKSEPLTTERVRTTLSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQS 60
           MSRLEAKKPSLCKSEPLTTERVRTTLSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQS
Sbjct: 1   MSRLEAKKPSLCKSEPLTTERVRTTLSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQS 60

Query: 61  SALLSHLLVTHPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRLGLTPTTVIRLN 120
           SALLSHLLVTHPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRLGLTPTTVIRLN
Sbjct: 61  SALLSHLLVTHPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRLGLTPTTVIRLN 120

Query: 121 KHLLSLCISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILR 180
           KHLLSLCISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILR
Sbjct: 121 KHLLSLCISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILR 180

Query: 181 AFLLTIPENAEGHIILGKSLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALK 240
           AFLLTIPENAEGHIILGKSLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALK
Sbjct: 181 AFLLTIPENAEGHIILGKSLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALK 240

Query: 241 VALFCTTLSGDTSDTGEGTVVVSYGVSLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPS 300
           VALFCTTLSGDTSDTGEGTVVVSYGVSLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPS
Sbjct: 241 VALFCTTLSGDTSDTGEGTVVVSYGVSLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPS 300

Query: 301 LKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHF 360
           LKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHF
Sbjct: 301 LKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHF 360

Query: 361 FHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAY 420
           FHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAY
Sbjct: 361 FHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAY 420

Query: 421 IRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGGEILTDMKYGHLWSV 480
           IRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGGEILTDMKYGHLWSV
Sbjct: 421 IRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGGEILTDMKYGHLWSV 480

Query: 481 QADSPCVANWPDLLSQCGCGLYNSQEELNWSFLRSTRRPFVPQSCLPHEAVGSASNLTLD 540
           QADSPCVANWPDLLSQCGCGLYNSQEELNWSFLRSTRRPFVPQSCLPHEAVGSASNLTLD
Sbjct: 481 QADSPCVANWPDLLSQCGCGLYNSQEELNWSFLRSTRRPFVPQSCLPHEAVGSASNLTLD 540

Query: 541 CLTAKLSGLQVAVETANLILDLSYVIEDKN 570
           CLTAKLSGLQVAVETANLILDLSYVIEDKN
Sbjct: 541 CLTAKLSGLQVAVETANLILDLSYVIEDKN 570


>gi|25914754 McKusick-Kaufman syndrome protein [Homo sapiens]
          Length = 570

 Score = 1140 bits (2949), Expect = 0.0
 Identities = 570/570 (100%), Positives = 570/570 (100%)

Query: 1   MSRLEAKKPSLCKSEPLTTERVRTTLSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQS 60
           MSRLEAKKPSLCKSEPLTTERVRTTLSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQS
Sbjct: 1   MSRLEAKKPSLCKSEPLTTERVRTTLSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQS 60

Query: 61  SALLSHLLVTHPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRLGLTPTTVIRLN 120
           SALLSHLLVTHPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRLGLTPTTVIRLN
Sbjct: 61  SALLSHLLVTHPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRLGLTPTTVIRLN 120

Query: 121 KHLLSLCISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILR 180
           KHLLSLCISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILR
Sbjct: 121 KHLLSLCISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILR 180

Query: 181 AFLLTIPENAEGHIILGKSLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALK 240
           AFLLTIPENAEGHIILGKSLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALK
Sbjct: 181 AFLLTIPENAEGHIILGKSLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALK 240

Query: 241 VALFCTTLSGDTSDTGEGTVVVSYGVSLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPS 300
           VALFCTTLSGDTSDTGEGTVVVSYGVSLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPS
Sbjct: 241 VALFCTTLSGDTSDTGEGTVVVSYGVSLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPS 300

Query: 301 LKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHF 360
           LKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHF
Sbjct: 301 LKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHF 360

Query: 361 FHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAY 420
           FHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAY
Sbjct: 361 FHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAY 420

Query: 421 IRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGGEILTDMKYGHLWSV 480
           IRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGGEILTDMKYGHLWSV
Sbjct: 421 IRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGGEILTDMKYGHLWSV 480

Query: 481 QADSPCVANWPDLLSQCGCGLYNSQEELNWSFLRSTRRPFVPQSCLPHEAVGSASNLTLD 540
           QADSPCVANWPDLLSQCGCGLYNSQEELNWSFLRSTRRPFVPQSCLPHEAVGSASNLTLD
Sbjct: 481 QADSPCVANWPDLLSQCGCGLYNSQEELNWSFLRSTRRPFVPQSCLPHEAVGSASNLTLD 540

Query: 541 CLTAKLSGLQVAVETANLILDLSYVIEDKN 570
           CLTAKLSGLQVAVETANLILDLSYVIEDKN
Sbjct: 541 CLTAKLSGLQVAVETANLILDLSYVIEDKN 570


>gi|63162572 chaperonin containing TCP1, subunit 3 isoform a [Homo
           sapiens]
          Length = 545

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 89/402 (22%), Positives = 165/402 (41%), Gaps = 19/402 (4%)

Query: 32  IVTSCYGPSGRLKQLHNGFGGYVCTTSQSSALLSHLLVTHPILKILTASIQNHVSSFSDC 91
           I+ +C GP   +K L +  GG V T +  +A+L  + V HP  K +    +       D 
Sbjct: 36  IIRTCLGPKSMMKMLLDPMGGIVMT-NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDG 94

Query: 92  GLFTAILCCNLI---ENVQRLGLTPTTVIRLNKHLLSLCISYLKSETCGCRIPVDFSSTQ 148
                IL   ++   E+     + PT VI   +  L   IS LK  +    IPVD S + 
Sbjct: 95  TTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS----IPVDISDSD 150

Query: 149 ILLCLVRSILTSKPACMLTRKETEHVSALILRAFLLTIPENAEGHIILGK-SLIVPLKGQ 207
           ++L ++ S +T+K    ++R  +   +  +    ++   EN    I + K + +  + G 
Sbjct: 151 MMLNIINSSITTKA---ISRWSSLACNIALDAVKMVQFEENGRKEIDIKKYARVEKIPGG 207

Query: 208 RVIDSTVLPGILIEMSEVQLMRLLPIKKSTALKVALFCTTLSGDTSDTGEGTVVVSYG-- 265
            + DS VL G++I            IK    + +        G++    E T    +   
Sbjct: 208 IIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRI 267

Query: 266 VSLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPSLKQFLNMHRIIAIDRIGVTLMEPLT 325
           + +E   + QL      +I    D+V+ +K I    + +L    I AI R+  T    + 
Sbjct: 268 LQMEEEYIQQLCE---DIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIA 324

Query: 326 KMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHFFHLIPN--EATICSLLLCNRNDTAW 383
           +  G + +     +  +  G+   +   K     +F  I +  +   C++LL   +    
Sbjct: 325 RACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEIL 384

Query: 384 DELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAYIRHKT 425
            E++   Q A+ V +  L +P  + GGG +E  +A  +  K+
Sbjct: 385 SEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKS 426


>gi|58761486 chaperonin containing TCP1, subunit 3 isoform b [Homo
           sapiens]
          Length = 544

 Score = 75.9 bits (185), Expect = 9e-14
 Identities = 89/401 (22%), Positives = 165/401 (41%), Gaps = 18/401 (4%)

Query: 32  IVTSCYGPSGRLKQLHNGFGGYVCTTSQSSALLSHLLVTHPILKILTASIQNHVSSFSDC 91
           I+ +C GP   +K L +  GG V T +  +A+L  + V HP  K +    +       D 
Sbjct: 36  IIRTCLGPKSMMKMLLDPMGGIVMT-NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDG 94

Query: 92  GLFTAIL--CCNLIENVQRLGLTPTTVIRLNKHLLSLCISYLKSETCGCRIPVDFSSTQI 149
                IL    ++ E+     + PT VI   +  L   IS LK  +    IPVD S + +
Sbjct: 95  TTSVIILGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS----IPVDISDSDM 150

Query: 150 LLCLVRSILTSKPACMLTRKETEHVSALILRAFLLTIPENAEGHIILGK-SLIVPLKGQR 208
           +L ++ S +T+K    ++R  +   +  +    ++   EN    I + K + +  + G  
Sbjct: 151 MLNIINSSITTKA---ISRWSSLACNIALDAVKMVQFEENGRKEIDIKKYARVEKIPGGI 207

Query: 209 VIDSTVLPGILIEMSEVQLMRLLPIKKSTALKVALFCTTLSGDTSDTGEGTVVVSYG--V 266
           + DS VL G++I            IK    + +        G++    E T    +   +
Sbjct: 208 IEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRIL 267

Query: 267 SLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPSLKQFLNMHRIIAIDRIGVTLMEPLTK 326
            +E   + QL      +I    D+V+ +K I    + +L    I AI R+  T    + +
Sbjct: 268 QMEEEYIQQLCE---DIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIAR 324

Query: 327 MTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHFFHLIPN--EATICSLLLCNRNDTAWD 384
             G + +     +  +  G+   +   K     +F  I +  +   C++LL   +     
Sbjct: 325 ACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILS 384

Query: 385 ELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAYIRHKT 425
           E++   Q A+ V +  L +P  + GGG +E  +A  +  K+
Sbjct: 385 EVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKS 425


>gi|38455427 chaperonin containing TCP1, subunit 4 (delta) [Homo
           sapiens]
          Length = 539

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 94/450 (20%), Positives = 185/450 (41%), Gaps = 43/450 (9%)

Query: 33  VTSCYGPSGRLKQLHNGFGGYVCTTSQSSALLSHLLVTHPILKILTASIQNHVSSFSDCG 92
           + +  GP G  K + +G G  V  T+  + +L  + V HP  ++L    +       D  
Sbjct: 48  IRTSLGPKGMDKMIQDGKGD-VTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGT 106

Query: 93  LFTAILCCNLIENVQRL---GLTPTTVIRLNKHLLSLCISYLKSETCGCRIPVDFSSTQI 149
               I+  +L+++  +L   G+ PT +    +  L   I  L   +     PV+ S  + 
Sbjct: 107 TSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSR----PVELSDRET 162

Query: 150 LLCLVRSILTSKPACMLTRKETEHVSALILRAFLLTIPENAEGHIILGKSLIVPLKGQRV 209
           LL    + L SK    +  + +  +S + + A +  I       + L    IV   G  +
Sbjct: 163 LLNSATTSLNSK----VVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTI 218

Query: 210 IDSTVLPGILIEMSEVQLMRLLPIKKSTALKVALFCTTLSGDTSDTGEGTVVVSYGVSLE 269
            D  ++ G+++   +V    +  ++K+   K+ L    LS   +D  +  +VVS    ++
Sbjct: 219 DDCELVEGLVLTQ-KVSNSGITRVEKA---KIGLIQFCLSAPKTDM-DNQIVVSDYAQMD 273

Query: 270 NAVLDQ---LLNLGRQLISDHVDLVLCQK-VIHPSLKQ----FLNMHRIIAIDRIGVTLM 321
             + ++   +LNL +Q+     +++L QK ++  +L      FLN  +I+ I  I    +
Sbjct: 274 RVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVIKDIEREDI 333

Query: 322 EPLTKMTGTQPIGSLGSICPNSYGS---VKDVCTAKFGSKHFFHLIPNEATICSLLLCNR 378
           E + K  GT+P+  +     +  GS    ++V     G         +     ++++   
Sbjct: 334 EFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPGKTVTIVVRGS 393

Query: 379 NDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAYIRH--KTHNDPESILKDD 436
           N    +E + +   AL V++  +K+   + GGG  E  LA  +    +T +  ES     
Sbjct: 394 NKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMES----- 448

Query: 437 ECTQTELQLIAEAFCSALESVVGSLEHDGG 466
                       AF  A+E +  +L  + G
Sbjct: 449 --------YCVRAFADAMEVIPSTLAENAG 470


>gi|58761484 chaperonin containing TCP1, subunit 3 isoform c [Homo
           sapiens]
          Length = 507

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 77/365 (21%), Positives = 145/365 (39%), Gaps = 18/365 (4%)

Query: 69  VTHPILKILTASIQNHVSSFSDCGLFTAILCCNLI---ENVQRLGLTPTTVIRLNKHLLS 125
           V HP  K +    +       D      IL   ++   E+     + PT VI   +  L 
Sbjct: 34  VQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALD 93

Query: 126 LCISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILRAFLLT 185
             IS LK  +    IPVD S + ++L ++ S +T+K    ++R  +   +  +    ++ 
Sbjct: 94  DMISTLKKIS----IPVDISDSDMMLNIINSSITTKA---ISRWSSLACNIALDAVKMVQ 146

Query: 186 IPENAEGHIILGK-SLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALKVALF 244
             EN    I + K + +  + G  + DS VL G++I            IK    + +   
Sbjct: 147 FEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSS 206

Query: 245 CTTLSGDTSDTGEGTVVVSYG--VSLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPSLK 302
                G++    E T    +   + +E   + QL      +I    D+V+ +K I    +
Sbjct: 207 LEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCE---DIIQLKPDVVITEKGISDLAQ 263

Query: 303 QFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHFFH 362
            +L    I AI R+  T    + +  G + +     +  +  G+   +   K     +F 
Sbjct: 264 HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFT 323

Query: 363 LIPN--EATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAY 420
            I +  +   C++LL   +     E++   Q A+ V +  L +P  + GGG +E  +A  
Sbjct: 324 FITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHA 383

Query: 421 IRHKT 425
           +  K+
Sbjct: 384 LTEKS 388


>gi|24307939 chaperonin containing TCP1, subunit 5 (epsilon) [Homo
           sapiens]
          Length = 541

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 89/467 (19%), Positives = 178/467 (38%), Gaps = 37/467 (7%)

Query: 13  KSEPLTTERVRTTLSVLKRIVTSC---YGPSGRLKQLHNGFGGYVCTTSQSSALLSHLLV 69
           KS  +  E +++ +   K +  +     GP+G  K + +  G  V  T+  + +LS + V
Sbjct: 25  KSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGD-VTVTNDGATILSMMDV 83

Query: 70  THPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRL---GLTPTTVIRLNKHLLSL 126
            H I K++    ++      D      +L   L+E  ++L   G+ P  +    +    +
Sbjct: 84  DHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARV 143

Query: 127 CISYLKSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILRAFLLTI 186
            I +L  +     + VD   T+ L+   ++ L SK      R+  E     I    +LT+
Sbjct: 144 AIEHL--DKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAE-----IAVNAVLTV 196

Query: 187 PENAEGHIILGKSLIVPLKGQRVIDSTVLPGILI--EMSEVQLMRLLPIKKSTALKVALF 244
            +     +      +    G R+ D+ ++ G+++  + S  Q+      KK    K+A+ 
Sbjct: 197 ADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMP-----KKVEDAKIAIL 251

Query: 245 CTTLSGDTSDTGEGTVVVSYG--VSLENAVLDQLLNLGRQLISDHVDLVLCQKVIHPSLK 302
                     T     V S     +L+    ++   + +Q+     +L +CQ        
Sbjct: 252 TCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEAN 311

Query: 303 QFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKHFFH 362
             L  + + A+  +G   +E +   TG + +     +     G    V    FG+     
Sbjct: 312 HLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKM 371

Query: 363 LIPNE---ATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAA 419
           L+  +   +   ++ +   N    +E K +   AL V++  +++   + GGG  E   A 
Sbjct: 372 LVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCAL 431

Query: 420 YIRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGG 466
            +  +           D+C   E Q    AF  ALE +  +L  + G
Sbjct: 432 AVSQEA----------DKCPTLE-QYAMRAFADALEVIPMALSENSG 467


>gi|5453603 chaperonin containing TCP1, subunit 2 [Homo sapiens]
          Length = 535

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 84/413 (20%), Positives = 159/413 (38%), Gaps = 36/413 (8%)

Query: 32  IVTSCYGPSGRLK-QLHNGFGGYVCTTSQSSALLSHLLVTHPILKILTASIQNHVSSFSD 90
           +V S  GP G  K  L +G    +  T+  + +L ++ V +P  K+L    +       D
Sbjct: 38  LVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGD 97

Query: 91  CGLFTAILCCNLIENVQRL---GLTPTTVIRLNKHLLSLCISYLKSETCGCRIPVDFSST 147
                 +L   L+   + L    + P T+I   +         L S        VD  S 
Sbjct: 98  GTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSA------VDHGSD 151

Query: 148 QI-----LLCLVRSILTSKPACMLTRKETEHVSALILRAFLLTIPENAEGHIILGKSLIV 202
           ++     L+ +  + L+SK    L     +H + L + A L       +G   L    I+
Sbjct: 152 EVKFRQDLMNIAGTTLSSK----LLTHHKDHFTKLAVEAVL-----RLKGSGNLEAIHII 202

Query: 203 PLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALKVALFCTTLSGDTSDTGEGTVVV 262
              G  + DS +  G L++      + +   K+    K+ +  T +  D        V V
Sbjct: 203 KKLGGSLADSYLDEGFLLDKK----IGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRV 258

Query: 263 SYGVS---LENAVLDQLLNLGRQLISDHVDLVLCQKVIHPSLKQFLNMHRIIAIDRIGVT 319
                   +E+A  +++     +++   ++  + +++I+   +Q      ++AI+     
Sbjct: 259 DSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFA 318

Query: 320 LMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSK---HFFHLIPNEATICSLLLC 376
            +E L  +TG +   +         GS K +     G     HF  +   EA  C+++L 
Sbjct: 319 GVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEA--CTIVLR 376

Query: 377 NRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAYIRHKTHNDP 429
                  DE + +   AL VL  T+K+   + GGGC+E  +A  +    +  P
Sbjct: 377 GATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLANRTP 429


>gi|48762932 chaperonin containing TCP1, subunit 8 (theta) [Homo
           sapiens]
          Length = 548

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 84/446 (18%), Positives = 168/446 (37%), Gaps = 35/446 (7%)

Query: 29  LKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQSSALLSHLLVTHPILKILTASIQNHVSSF 88
           L +   + YGP+G  K + N     +  T+ ++ +L  L V HP  K++  +        
Sbjct: 39  LAQTTRTAYGPNGMNKMVINHLEK-LFVTNDAATILRELEVQHPAAKMIVMASHMQEQEV 97

Query: 89  SDCGLFTAILC---CNLIENVQRLGLTPTTVIRLNKHLLSLCISYLKSETCGCRIPVDFS 145
            D   F  +       L E + R+GL+ + VI   +         L +  C C    +  
Sbjct: 98  GDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEILPNLVC-CSAK-NLR 155

Query: 146 STQILLCLVRSILTSKPACMLTRKETEHVSALILRAFLLTIPENAEGHIILGKSLIVPLK 205
               +  L+R+ + SK            ++ LI +A +   P++  GH  +    +  + 
Sbjct: 156 DIDEVSSLLRTSIMSK-----QYGNEVFLAKLIAQACVSIFPDS--GHFNVDNIRVCKIL 208

Query: 206 GQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALKVALFCTTLSGDTSDTGEGTVVVSYG 265
           G  +  S+VL G++ +           +      K+A++     G  ++T +GTV++   
Sbjct: 209 GSGISSSSVLHGMVFKKETEG-----DVTSVKDAKIAVYSCPFDGMITET-KGTVLIKTA 262

Query: 266 VSLENAVL--DQLLNLGRQLISD-HVDLVLCQKVIHPSLKQFLNMHRIIAIDRIGVTLME 322
             L N     + L++   + I+D   ++V+    +      + N + I+ +       + 
Sbjct: 263 EELMNFSKGEENLMDAQVKAIADTGANVVVTGGKVADMALHYANKYNIMLVRLNSKWDLR 322

Query: 323 PLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSKH--FFHLIPNEATICSLLLCNRND 380
            L K  G   +  L        G    V  ++ G      F     +  I +++L    D
Sbjct: 323 RLCKTVGATALPRLTPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTD 382

Query: 381 TAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAYIRHKTHNDPESILKDDECTQ 440
              D+++      ++  ++  ++   + GGG TE  LA  I              + C  
Sbjct: 383 NLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITS----------YGETCPG 432

Query: 441 TELQLIAEAFCSALESVVGSLEHDGG 466
            E Q   + F  A E++  +L  + G
Sbjct: 433 LE-QYAIKKFAEAFEAIPRALAENSG 457


>gi|7657253 T-complex protein 1 [Homo sapiens]
          Length = 557

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 26  LSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQSSALLSHLLVTHPILKILTASIQNHV 85
           +  L  ++  CYGP GR K L    G  VC T  ++A+L  L + HP   +L  + Q   
Sbjct: 40  VQTLASVIRPCYGPHGRQKFLVTMKGETVC-TGCATAILRALELEHPAAWLLREAGQTQA 98

Query: 86  SSFSDCGLFTAILCCNLIENVQRL 109
            +  D   F  +L   L+E  ++L
Sbjct: 99  ENSGDGTAFVVLLTEALLEQAEQL 122


>gi|5453607 chaperonin containing TCP1, subunit 7 isoform a [Homo
           sapiens]
          Length = 543

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 84/449 (18%), Positives = 170/449 (37%), Gaps = 35/449 (7%)

Query: 28  VLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQSSALLSHLL-VTHPILKILTASIQNHVS 86
           V+   V +  GP G  K + +G G    T S   A +  LL V HP  K L    ++  +
Sbjct: 31  VIAEAVRTTLGPRGMDKLIVDGRGK--ATISNDGATILKLLDVVHPAAKTLVDIAKSQDA 88

Query: 87  SFSDCGLFTAILCCNLIENVQRL---GLTPTTVIRLNKHLLSLCISYLKSETCGCRIPVD 143
              D      +L    ++ V+     GL P  +IR  +    L ++ +K      +    
Sbjct: 89  EVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADK 148

Query: 144 FSSTQILLCLVRSILTSKPACMLTRKETEHVSALILRAFLLTIPENAEGHIILGKSLIVP 203
               ++L     + L+SK    L  ++    + +++ A ++      +  + L    I  
Sbjct: 149 VEQRKLLEKCAMTALSSK----LISQQKAFFAKMVVDAVMML-----DDLLQLKMIGIKK 199

Query: 204 LKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALKVALFCTTLSGDTSDTGEGTVVVS 263
           ++G  + DS ++ G+  + +       +  KK    K+AL    L  +     +   +  
Sbjct: 200 VQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVEL--ELKAEKDNAEIRV 257

Query: 264 YGVSLENAVLDQLLNLG----RQLISDHVDLVLCQKVIHPSLKQFLNMHRIIAIDRIGVT 319
           + V    A++D   N+      ++      +VL +  I     Q+     +    R+   
Sbjct: 258 HTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEE 317

Query: 320 LMEPLTKMTGTQPIGSLGSICPNSYGSVKDVCTAKFGSK--HFFHLIPNEATICSLLLCN 377
            ++      G     S+ ++  +  G  +     + G +  +FF   P   T C+ +L  
Sbjct: 318 DLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIGGERYNFFTGCPKAKT-CTFILRG 376

Query: 378 RNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAYIRHKTHNDPESILKDDE 437
             +   +E + +   A+ +++  +K    + GGG  E  L+ Y+R  +   P        
Sbjct: 377 GAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIP-------- 428

Query: 438 CTQTELQLIAEAFCSALESVVGSLEHDGG 466
               + QL+  A+  ALE +   L  + G
Sbjct: 429 ---GKQQLLIGAYAKALEIIPRQLCDNAG 454


>gi|57863257 T-complex protein 1 isoform a [Homo sapiens]
          Length = 556

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 82/430 (19%), Positives = 162/430 (37%), Gaps = 40/430 (9%)

Query: 15  EPLTTERVRTTLSVLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQSSALLSHLLVTHPIL 74
           E + ++ V    S+   IV S  GP G  K L +  G  V  T+  + +L  L V HP  
Sbjct: 15  ETIRSQNVMAAASIAN-IVKSSLGPVGLDKMLVDDIGD-VTITNDGATILKLLEVEHPAA 72

Query: 75  KILTASIQNHVSSFSDCGLFTAILCCNLIENVQRL---GLTPTTVIRLNKHLLSLCISYL 131
           K+L            D      I+   L++N   L    + PT+VI   +      + Y+
Sbjct: 73  KVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYI 132

Query: 132 KSETCGCRIPVDFSSTQILLCLVRSILTSKPACMLTRKETEHVSALILRAFLLTIPENAE 191
                   +  D      L+   ++ ++SK    +     +  + +++ A L     +  
Sbjct: 133 NENLI---VNTDELGRDCLINAAKTSMSSK----IIGINGDFFANMVVDAVLAIKYTDIR 185

Query: 192 G--HIILGKSLIVPLKGQRVIDSTVLPGILIEMSEVQLMRLLPIKKSTALKVALFCTTLS 249
           G     +    I+   G+  ++S ++ G  +    V   + +P K+    K+A    +L 
Sbjct: 186 GQPRYPVNSVNILKAHGRSQMESMLISGYALNC--VVGSQGMP-KRIVNAKIACLDFSLQ 242

Query: 250 GDTSDTGEGTVVVSYGVSLENAVLDQLLNLGRQLISDHVDLVLCQ---------KVIHPS 300
                 G   V+       +   LDQ+      +  + +  +L            +    
Sbjct: 243 KTKMKLGVQVVIT------DPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMC 296

Query: 301 LKQFLNMHRIIAIDRIGVTLMEPLTKMTGTQPIGSLGSICPNS------YGSVKDVCTAK 354
           LK F+     +A+ R+    ++ + K +G   + +L ++           G  ++V   +
Sbjct: 297 LKYFVEA-GAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQER 355

Query: 355 FGSKHFFHLIPNEA-TICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCT 413
                   +   +A T  S++L   ND   DE++ +   AL V++  L+    + GGG  
Sbjct: 356 ICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAV 415

Query: 414 ETHLAAYIRH 423
           E  L+ Y+ +
Sbjct: 416 EAALSIYLEN 425


>gi|100816407 Bardet-Biedl syndrome 10 [Homo sapiens]
          Length = 723

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 28  VLKRIVTSCYGPSGRLKQLHNGFGGYVCTTSQSSALLSHLLVTHPILKILTASIQNHVSS 87
           VL+ IV+ C GP GR + L     G V  +     LL  L + HPI +++   + +H+  
Sbjct: 20  VLEAIVSCCVGPEGR-QVLCTKPTGEVLLSRNGGRLLEALHLEHPIARMIVDCVSSHLKK 78

Query: 88  FSDCGLFTAILCCNLIENVQRL 109
             D      I  C+L+  +  +
Sbjct: 79  TGDGAKTFIIFLCHLLRGLHAI 100


>gi|58331185 chaperonin containing TCP1, subunit 7 isoform b [Homo
           sapiens]
          Length = 339

 Score = 32.7 bits (73), Expect = 0.92
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 356 GSKHFFHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTET 415
           G ++ F     +A  C+ +L    +   +E + +   A+ +++  +K    + GGG  E 
Sbjct: 151 GERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEM 210

Query: 416 HLAAYIRHKTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGG 466
            L+ Y+R  +   P            + QL+  A+  ALE +   L  + G
Sbjct: 211 ELSKYLRDYSRTIP-----------GKQQLLIGAYAKALEIIPRQLCDNAG 250


>gi|57863259 T-complex protein 1 isoform b [Homo sapiens]
          Length = 401

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 369 TICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGGGCTETHLAAYIRH 423
           T  S++L   ND   DE++ +   AL V++  L+    + GGG  E  L+ Y+ +
Sbjct: 216 TSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLEN 270


>gi|225690529 golgin, RAB6-interacting isoform a [Homo sapiens]
          Length = 394

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 12/55 (21%)

Query: 473 KYGHLWSVQADSPCVANWPDLLSQCGCGLYNSQEELNWSFLRSTRRPFVPQSCLP 527
           ++GH W  +        WP  ++Q   G   S+EEL    L+ T+ PF PQ  LP
Sbjct: 13  RFGHFWGCR--------WPGPMAQGWAGF--SEEELR--RLKQTKDPFEPQRRLP 55


>gi|225690532 golgin, RAB6-interacting isoform b [Homo sapiens]
          Length = 246

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 12/55 (21%)

Query: 473 KYGHLWSVQADSPCVANWPDLLSQCGCGLYNSQEELNWSFLRSTRRPFVPQSCLP 527
           ++GH W  +        WP  ++Q   G   S+EEL    L+ T+ PF PQ  LP
Sbjct: 13  RFGHFWGCR--------WPGPMAQGWAGF--SEEELR--RLKQTKDPFEPQRRLP 55


>gi|52627141 olfactory receptor, family 9, subfamily Q, member 2
           [Homo sapiens]
          Length = 314

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 351 CTAKFGSKHFFHLIPNEATICSLLLCNRNDTAWDELKLTCQTALHVLQLTLKEPWALLGG 410
           C A+F    FF  I      C LL       A+D     CQ  L+V  +T K  W L+ G
Sbjct: 97  CAAQFFLFTFFASID-----CYLLAI----MAYDRYTAVCQPLLYVTIITEKARWGLVTG 147

Query: 411 GCTETHLAAYIRHKT 425
                  +A++R  T
Sbjct: 148 AYVAGFFSAFVRTVT 162


>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
            sapiens]
          Length = 1935

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 7/46 (15%)

Query: 424  KTHNDPESILKDDECTQTELQLIAEAFCSALESVVGSLEHDGGEIL 469
            KT ++ E + K  E  + ELQ       SALE    SLEH+ G+IL
Sbjct: 1521 KTIHELEKVRKQLEAEKMELQ-------SALEEAEASLEHEEGKIL 1559


>gi|239746217 PREDICTED: zinc finger protein 66 [Homo sapiens]
          Length = 1114

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 69   VTHPILKILTASIQNHVSSFSDCGLFTAILCCNLIENVQRLGLTPTTVIRLNKHLLSLCI 128
            VT  I+ +   S+  H   F+    FTA++ C+L        +   T+I  + + L++ +
Sbjct: 1007 VTQSIITLRICSLGKH---FNATHSFTAVVICSLSATQSSEPVYRQTLILNSGYKLTVTL 1063

Query: 129  SYLKSETCGCRIPVDFSSTQILLCLVRSILTSKP 162
            S++  E   C   +  S    L  L  S++T +P
Sbjct: 1064 SFITWEPVHCHPHIHHSGN--LFTLTNSLITWEP 1095


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,936,863
Number of Sequences: 37866
Number of extensions: 914403
Number of successful extensions: 2088
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2065
Number of HSP's gapped (non-prelim): 26
length of query: 570
length of database: 18,247,518
effective HSP length: 108
effective length of query: 462
effective length of database: 14,157,990
effective search space: 6540991380
effective search space used: 6540991380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press