Search of human proteins with 253314472

Search of human proteins with 253314472

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]
         (261 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]                   526   e-150
gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]                    506   e-144
gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]                   450   e-127
gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]                   430   e-121
gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]                    379   e-105
gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]                   227   7e-60
gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]                   227   9e-60
gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]                   207   6e-54
gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]           98   6e-21
gi|54607124 RNA binding motif protein 15B [Homo sapiens]               32   0.43 
gi|188528675 slit homolog 1 [Homo sapiens]                             32   0.56 
gi|210147558 hypothetical protein LOC202051 [Homo sapiens]             29   4.7  
gi|118498362 kinectin 1 isoform b [Homo sapiens]                       28   8.1  
gi|118498356 kinectin 1 isoform a [Homo sapiens]                       28   8.1  
gi|118498368 kinectin 1 isoform c [Homo sapiens]                       28   8.1  
gi|33620775 kinectin 1 isoform a [Homo sapiens]                        28   8.1  

>gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]
          Length = 261

 Score =  526 bits (1355), Expect = e-150
 Identities = 261/261 (100%), Positives = 261/261 (100%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER 120
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER 120

Query: 121 ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQK 180
           ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQK
Sbjct: 121 ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQK 180

Query: 181 LAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQE 240
           LAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQE
Sbjct: 181 LAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQE 240

Query: 241 EEGYLSDFSLEEEEFRLPELD 261
           EEGYLSDFSLEEEEFRLPELD
Sbjct: 241 EEGYLSDFSLEEEEFRLPELD 261


>gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]
          Length = 284

 Score =  506 bits (1304), Expect = e-144
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152

Query: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 189
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD
Sbjct: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 212

Query: 190 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 249
           AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS
Sbjct: 213 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 272

Query: 250 LEEEEFRLPELD 261
           LEEEEFRLPELD
Sbjct: 273 LEEEEFRLPELD 284


>gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]
          Length = 228

 Score =  450 bits (1157), Expect = e-127
 Identities = 228/261 (87%), Positives = 228/261 (87%), Gaps = 33/261 (12%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER 120
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEER 120

Query: 121 ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQK 180
           ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE              
Sbjct: 121 ENEDSMVPLPKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE-------------- 166

Query: 181 LAIQKALSDAFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQE 240
                              ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQE
Sbjct: 167 -------------------ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQE 207

Query: 241 EEGYLSDFSLEEEEFRLPELD 261
           EEGYLSDFSLEEEEFRLPELD
Sbjct: 208 EEGYLSDFSLEEEEFRLPELD 228


>gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]
          Length = 251

 Score =  430 bits (1106), Expect = e-121
 Identities = 219/252 (86%), Positives = 219/252 (86%), Gaps = 33/252 (13%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152

Query: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 189
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE                       
Sbjct: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEE----------------------- 189

Query: 190 AFQKLLIVVLESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 249
                     ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS
Sbjct: 190 ----------ESGKIAVEYRPSEDIVGVRCEEELHGLIQVPCSPWKQYGQEEEGYLSDFS 239

Query: 250 LEEEEFRLPELD 261
           LEEEEFRLPELD
Sbjct: 240 LEEEEFRLPELD 251


>gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]
          Length = 236

 Score =  379 bits (972), Expect = e-105
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 129
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKLQELSDLEERENEDSMVPL 152

Query: 130 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 189
           PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD
Sbjct: 153 PKQSLKFFCALEVVLPSCDCRSPGIGLVEEPMDKVEEGPLSFLMKRKTAQKLAIQKALSD 212

Query: 190 AFQKLLIVVL 199
           AFQKLLIVVL
Sbjct: 213 AFQKLLIVVL 222


>gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]
          Length = 143

 Score =  227 bits (579), Expect = 7e-60
 Identities = 110/111 (99%), Positives = 111/111 (100%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKL 111
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK+
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKV 111



 Score = 77.8 bits (190), Expect = 9e-15
 Identities = 34/36 (94%), Positives = 36/36 (100%)

Query: 226 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 261
           +I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 108 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 143


>gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]
          Length = 116

 Score =  227 bits (578), Expect = 9e-60
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60
           MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK
Sbjct: 1   MHLLVPPPQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRK 60

Query: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110
           QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 61  QLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110


>gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]
          Length = 166

 Score =  207 bits (528), Expect = 6e-54
 Identities = 101/102 (99%), Positives = 102/102 (100%)

Query: 10  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
           HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 33  HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92

Query: 70  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKL 111
           VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK+
Sbjct: 93  VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKV 134



 Score = 77.8 bits (190), Expect = 9e-15
 Identities = 34/36 (94%), Positives = 36/36 (100%)

Query: 226 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 261
           +I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 131 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 166


>gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]
          Length = 175

 Score = 98.2 bits (243), Expect = 6e-21
 Identities = 50/60 (83%), Positives = 50/60 (83%)

Query: 11  SLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKV 70
           SL  AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A H AQKAC RKQLFQ SPVKV
Sbjct: 105 SLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMAVHGAQKACHRKQLFQTSPVKV 164


>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
          Length = 890

 Score = 32.3 bits (72), Expect = 0.43
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 15  AFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLG 73
           AF ++G++  V V    A    G YA +KF +   AHRA+ A   + +  ++P+K+  G
Sbjct: 356 AFEKYGIIEEV-VIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGR-VIGRNPIKIGYG 412


>gi|188528675 slit homolog 1 [Homo sapiens]
          Length = 1534

 Score = 32.0 bits (71), Expect = 0.56
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 100  GFNGCSKRIIKLQELSDLEERENEDSMVPLPKQSLKFFCALEVVLPS------CDCRSPG 153
            GF+GC + +    EL D  + + +  +VP  +   K +C   +  P+      C C +  
Sbjct: 1309 GFHGCIRNLYINNELQDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPMCHCEAGW 1368

Query: 154  IGL-VEEPMD 162
            +GL  ++P D
Sbjct: 1369 VGLHCDQPAD 1378


>gi|210147558 hypothetical protein LOC202051 [Homo sapiens]
          Length = 205

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 12/95 (12%)

Query: 167 GPLSFLMKRKTAQKLAIQKALSDAFQKLL-------IVVLESGKIAVEYRPSEDIVGVRC 219
           G +  L K+   +KLA +KALS    K+L        ++ +  +I       EDI+  + 
Sbjct: 86  GEVEVLSKQLEKEKLAFEKALSSVKSKVLQESSKKDQLITKCNEIESHIIKQEDILNGK- 144

Query: 220 EEELHGLIQVPCSPWKQYGQEEEGYLSDFSLEEEE 254
           E E+  L QV      Q  Q    ++SDF +++++
Sbjct: 145 ENEIKELQQV----ISQQKQIFRNHMSDFRIQKQQ 175


>gi|118498362 kinectin 1 isoform b [Homo sapiens]
          Length = 1306

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 221  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 254
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1103 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1138


>gi|118498356 kinectin 1 isoform a [Homo sapiens]
          Length = 1357

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 221  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 254
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1126 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1161


>gi|118498368 kinectin 1 isoform c [Homo sapiens]
          Length = 1300

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 221  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 254
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1097 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1132


>gi|33620775 kinectin 1 isoform a [Homo sapiens]
          Length = 1357

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 221  EELHGLIQVPCSPWKQYGQEEEGYLSDF--SLEEEE 254
            +E+H L+Q+ C  +K    E EG L     S+E+EE
Sbjct: 1126 DEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEE 1161


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,558,371
Number of Sequences: 37866
Number of extensions: 452630
Number of successful extensions: 1030
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 18
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.