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Search of human proteins with 253314443
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens] 340 3e-94
gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens] 278 2e-75
gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens] 270 4e-73
gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens] 270 4e-73
gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens] 270 4e-73
gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens] 207 3e-54
gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens] 207 3e-54
gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens] 207 3e-54
gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens] 135 2e-32
gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens] 60 9e-10
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 32 0.19
gi|223005862 echinoderm microtubule associated protein like 6 [H... 28 4.7
gi|239741055 PREDICTED: similar to PRAME family member 10 [Homo ... 27 8.0
gi|239741051 PREDICTED: similar to PRAME family member 10 [Homo ... 27 8.0
>gi|253314443 RAD52 motif 1 isoform 3 [Homo sapiens]
Length = 166
Score = 340 bits (872), Expect = 3e-94
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
Query: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
Query: 121 YFGFNGCSKRIIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 166
YFGFNGCSKRIIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 121 YFGFNGCSKRIIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 166
>gi|253314451 RAD52 motif 1 isoform 6 [Homo sapiens]
Length = 143
Score = 278 bits (710), Expect = 2e-75
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 33 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
Query: 93 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKVPCSPWKQYGQEEEGYLSD 152
VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKVPCSPWKQYGQEEEGYLSD
Sbjct: 70 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKVPCSPWKQYGQEEEGYLSD 129
Query: 153 FSLEEEEFRLPELD 166
FSLEEEEFRLPELD
Sbjct: 130 FSLEEEEFRLPELD 143
>gi|77873934 RAD52 motif 1 isoform 2 [Homo sapiens]
Length = 236
Score = 270 bits (690), Expect = 4e-73
Identities = 133/134 (99%), Positives = 134/134 (100%)
Query: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
Query: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
Query: 121 YFGFNGCSKRIIKV 134
YFGFNGCSKRIIK+
Sbjct: 121 YFGFNGCSKRIIKL 134
>gi|21717826 RAD52 motif 1 isoform 1 [Homo sapiens]
Length = 284
Score = 270 bits (690), Expect = 4e-73
Identities = 133/134 (99%), Positives = 134/134 (100%)
Query: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
Query: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
Query: 121 YFGFNGCSKRIIKV 134
YFGFNGCSKRIIK+
Sbjct: 121 YFGFNGCSKRIIKL 134
Score = 77.8 bits (190), Expect = 4e-15
Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 131 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 166
+I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 249 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 284
>gi|253314445 RAD52 motif 1 isoform 4 [Homo sapiens]
Length = 251
Score = 270 bits (690), Expect = 4e-73
Identities = 133/134 (99%), Positives = 134/134 (100%)
Query: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG
Sbjct: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPG 60
Query: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY
Sbjct: 61 FYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANY 120
Query: 121 YFGFNGCSKRIIKV 134
YFGFNGCSKRIIK+
Sbjct: 121 YFGFNGCSKRIIKL 134
Score = 77.8 bits (190), Expect = 4e-15
Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 131 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 166
+I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 216 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 251
>gi|253314472 RAD52 motif 1 isoform 8 [Homo sapiens]
Length = 261
Score = 207 bits (528), Expect = 3e-54
Identities = 101/102 (99%), Positives = 102/102 (100%)
Query: 33 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
Query: 93 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKV 134
VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK+
Sbjct: 70 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKL 111
Score = 77.8 bits (190), Expect = 4e-15
Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 131 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 166
+I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 226 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 261
>gi|253314447 RAD52 motif 1 isoform 5 [Homo sapiens]
Length = 228
Score = 207 bits (528), Expect = 3e-54
Identities = 101/102 (99%), Positives = 102/102 (100%)
Query: 33 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
Query: 93 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKV 134
VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK+
Sbjct: 70 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIKL 111
Score = 77.8 bits (190), Expect = 4e-15
Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 131 IIKVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 166
+I+VPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD
Sbjct: 193 LIQVPCSPWKQYGQEEEGYLSDFSLEEEEFRLPELD 228
>gi|253314453 RAD52 motif 1 isoform 7 [Homo sapiens]
Length = 116
Score = 207 bits (527), Expect = 3e-54
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 33 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 92
HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK
Sbjct: 10 HSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVK 69
Query: 93 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 133
VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK
Sbjct: 70 VRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSKRIIK 110
>gi|239745785 PREDICTED: similar to hCG2007264 [Homo sapiens]
Length = 175
Score = 135 bits (340), Expect = 2e-32
Identities = 69/81 (85%), Positives = 70/81 (86%)
Query: 13 SDKTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARA 72
SDKTLLVWELSSGPTA+ALH SL AFSQF LLYSVRVFPNAAVAH GFY VIKFYSA A
Sbjct: 84 SDKTLLVWELSSGPTADALHVSLGQAFSQFDLLYSVRVFPNAAVAHSGFYGVIKFYSAMA 143
Query: 73 AHRAQKACDRKQLFQKSPVKV 93
H AQKAC RKQLFQ SPVKV
Sbjct: 144 VHGAQKACHRKQLFQTSPVKV 164
>gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]
Length = 236
Score = 60.1 bits (144), Expect = 9e-10
Identities = 27/32 (84%), Positives = 31/32 (96%)
Query: 1 MAELVPFAVPIESDKTLLVWELSSGPTAEALH 32
MA+L+PFAVP +SDKTLLVWELSSGPTA+ALH
Sbjct: 1 MADLLPFAVPTKSDKTLLVWELSSGPTADALH 32
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 32.3 bits (72), Expect = 0.19
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 38 AFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPVKVRLG 96
AF ++G++ V V A G YA +KF + AHRA+ A + + ++P+K+ G
Sbjct: 356 AFEKYGIIEEV-VIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGR-VIGRNPIKIGYG 412
Score = 30.4 bits (67), Expect = 0.73
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 15 KTLLVWELSSGPTAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAH 74
KTLL+ LS AE L LF F +FG + S+R+ + G A + F + A
Sbjct: 139 KTLLISSLSPALPAEHLEDRLFHQFKRFGEI-SLRL---SHTPELGRVAYVNFRHPQDAR 194
Query: 75 RA-QKACDRKQLFQKSPVKV 93
A Q A R+ L P+KV
Sbjct: 195 EARQHALARQLLLYDRPLKV 214
>gi|223005862 echinoderm microtubule associated protein like 6 [Homo
sapiens]
Length = 1958
Score = 27.7 bits (60), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 4 LVPFAVPIESDKTLLVWELSS 24
L+P + DKTL +WELS+
Sbjct: 1009 LLPICATVSDDKTLRIWELSA 1029
>gi|239741055 PREDICTED: similar to PRAME family member 10 [Homo
sapiens]
Length = 426
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 70 ARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSK 129
AR + +A ++Q + P R+G R L L S E +Y FG+ +
Sbjct: 119 ARVLSCSPEAMSKRQTVEDCP---RMGERQPLKVFIDLCLKESTLDECLSYLFGWIHYRR 175
Query: 130 RIIKVPCSPWKQYGQEEEGY 149
++ + CS + Y +
Sbjct: 176 GLVHLCCSKVQNYSMPTSSF 195
>gi|239741051 PREDICTED: similar to PRAME family member 10 [Homo
sapiens]
Length = 426
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 70 ARAAHRAQKACDRKQLFQKSPVKVRLGTRHKAVQHQALALNSSKCQELANYYFGFNGCSK 129
AR + +A ++Q + P R+G R L L S E +Y FG+ +
Sbjct: 119 ARVLSCSPEAMSKRQTVEDCP---RMGERQPLKVFIDLCLKESTLDECLSYLFGWIHYRR 175
Query: 130 RIIKVPCSPWKQYGQEEEGY 149
++ + CS + Y +
Sbjct: 176 GLVHLCCSKVQNYSMPTSSF 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,375,220
Number of Sequences: 37866
Number of extensions: 244888
Number of successful extensions: 557
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 19
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.