Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287144 Sequence: fasta or formatted (530aa) NCBI GI: 239742276
Description:

PREDICTED: hypothetical protein XP_002342471

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         40           2
 C cysteine            3.2         17           1
 D aspartate           4.7         25           2
 E glutamate           5.8         31           2
 F phenylalanine       2.5         13           1
 G glycine             5.1         27           2
 H histidine           5.1         27           2
 I isoleucine          2.8         15           1
 K lysine              5.7         30           1
 L leucine            10.0         53           2
 M methionine          2.3         12           1
 N asparagine          3.4         18           1
 P proline             5.3         28           2
 Q glutamine           7.2         38           2
 R arginine            6.0         32           2
 S serine              7.5         40           2
 T threonine           5.7         30           2
 V valine              5.8         31           1
 W tryptophan          1.1          6           1
 Y tyrosine            3.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342471 
LOC728373             0.966   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC100287513          0.966   PREDICTED: hypothetical protein XP_002342480 
LOC100287441          0.966   PREDICTED: hypothetical protein XP_002342478 
LOC100287178          0.966   PREDICTED: hypothetical protein XP_002342472 
LOC100287327          0.965   PREDICTED: hypothetical protein XP_002342475 
LOC100287364          0.964   PREDICTED: hypothetical protein XP_002342476 
LOC100287404          0.963   PREDICTED: hypothetical protein XP_002342477 
LOC728419             0.962   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728405             0.962   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728400             0.962   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728393             0.962   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728379             0.962   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728373             0.962   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728369             0.962   PREDICTED: similar to deubiquitinating enzyme 3 [Ho...
USP17                 0.962   ubiquitin specific peptidase 17 
LOC728379             0.961   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
USP17L5               0.960   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
LOC100288520          0.957   PREDICTED: hypothetical protein XP_002342486 
LOC100287478          0.956   PREDICTED: hypothetical protein XP_002342479 
LOC100287205          0.955   PREDICTED: hypothetical protein XP_002342473 
LOC100287238          0.950   PREDICTED: hypothetical protein XP_002342474 
DUB3                  0.926   deubiquitinating enzyme 3 
USP17L3               0.917   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
USP17L8               0.916   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L4               0.908   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L7               0.891   PREDICTED: Inactive ubiquitin carboxyl-terminal hydr...
USP17L7               0.888   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L7               0.888   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
USP17L8               0.657   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press