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Search of human proteins with 24308464
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24308464 hypothetical protein LOC158297 [Homo sapiens]
(474 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24308464 hypothetical protein LOC158297 [Homo sapiens] 1017 0.0
gi|60223083 hypothetical protein LOC283726 [Homo sapiens] 234 1e-61
gi|48375167 microtubule-associated protein 6 isoform 2 [Homo sap... 39 0.008
gi|48375173 microtubule-associated protein 6 isoform 1 [Homo sap... 39 0.008
gi|47271475 SPOC domain containing 1 [Homo sapiens] 30 3.7
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 30 4.8
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 30 4.8
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 30 4.8
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 30 4.8
gi|122114658 hypothetical protein LOC23053 [Homo sapiens] 30 6.2
gi|239753437 PREDICTED: hypothetical protein [Homo sapiens] 29 8.1
gi|239748002 PREDICTED: hypothetical protein [Homo sapiens] 29 8.1
gi|239741900 PREDICTED: hypothetical protein XP_002342343 [Homo ... 29 8.1
>gi|24308464 hypothetical protein LOC158297 [Homo sapiens]
Length = 474
Score = 1017 bits (2630), Expect = 0.0
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MKTKCICELCSCGRHHCPHLPTKIYDETEKPCLLSEYTENYPFYHSYLPRESFKPRREYQ 60
MKTKCICELCSCGRHHCPHLPTKIYDETEKPCLLSEYTENYPFYHSYLPRESFKPRREYQ
Sbjct: 1 MKTKCICELCSCGRHHCPHLPTKIYDETEKPCLLSEYTENYPFYHSYLPRESFKPRREYQ 60
Query: 61 KGSIPMEGLTTSRRDFGPHKVAPVKVHQYDQFVPSEENMDLLTTYKKDYNPYPVCRVDPI 120
KGSIPMEGLTTSRRDFGPHKVAPVKVHQYDQFVPSEENMDLLTTYKKDYNPYPVCRVDPI
Sbjct: 61 KGSIPMEGLTTSRRDFGPHKVAPVKVHQYDQFVPSEENMDLLTTYKKDYNPYPVCRVDPI 120
Query: 121 KPRDSKYPCSDKMECLPTYKADYLPWNQPRREPLRLEHKYQPASVRFDNRTTHQDDYPIK 180
KPRDSKYPCSDKMECLPTYKADYLPWNQPRREPLRLEHKYQPASVRFDNRTTHQDDYPIK
Sbjct: 121 KPRDSKYPCSDKMECLPTYKADYLPWNQPRREPLRLEHKYQPASVRFDNRTTHQDDYPIK 180
Query: 181 GLVKTISCKPLAMPKLCNIPLEDVTNYKMSYVAHPVEKRFVHEAEKFRPCEIPFESLTTQ 240
GLVKTISCKPLAMPKLCNIPLEDVTNYKMSYVAHPVEKRFVHEAEKFRPCEIPFESLTTQ
Sbjct: 181 GLVKTISCKPLAMPKLCNIPLEDVTNYKMSYVAHPVEKRFVHEAEKFRPCEIPFESLTTQ 240
Query: 241 KQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPPEDR 300
KQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPPEDR
Sbjct: 241 KQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPPEDR 300
Query: 301 MDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKPVPQ 360
MDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKPVPQ
Sbjct: 301 MDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKPVPQ 360
Query: 361 LDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRC 420
LDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRC
Sbjct: 361 LDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRC 420
Query: 421 LASYPEPPGYTFEEVDALGHRIYKPVSQAGSQQSSHLSVDDSENPNQRELEVLA 474
LASYPEPPGYTFEEVDALGHRIYKPVSQAGSQQSSHLSVDDSENPNQRELEVLA
Sbjct: 421 LASYPEPPGYTFEEVDALGHRIYKPVSQAGSQQSSHLSVDDSENPNQRELEVLA 474
>gi|60223083 hypothetical protein LOC283726 [Homo sapiens]
Length = 398
Score = 234 bits (597), Expect = 1e-61
Identities = 126/376 (33%), Positives = 200/376 (53%), Gaps = 2/376 (0%)
Query: 75 DFGPHKVAPVKVHQYDQFVPSEENMDLLTTYKKDYNPYPVCRVDPIKPRDSKYPCSDKME 134
D+ P+++ H +++ P + +DL TTYK+D N Y V V ++P + + K++
Sbjct: 20 DYCPYEIVKQPRHVPEEYKPKQGKIDLGTTYKRDLNSYKVQPVAIVRPLERQVK-KGKLD 78
Query: 135 CLPTYKADYLPWNQPRREPLRLEHKYQPASVRFDNRTTHQDDYPIKGLVKTISCKPLAMP 194
+PTYK DY W+ + E + E Y P +V+F N TT QDD+ + + S KP ++
Sbjct: 79 TVPTYKDDYRAWDLHKSELYKPEQTYHPPTVKFGNSTTFQDDFVPQEIKPRQSFKPSSVV 138
Query: 195 KLCNIPLEDVTNYKMSYVAHPVEKRFVHEAEKFRPCEIPFESLTTQKQSYRGLMGEPAKS 254
K P +T++++ Y+ H +E +F E ++P + FE LTT + ++GL+GE AK
Sbjct: 139 KRSTAPFNGITSHRLDYIPHQLELKFERPKEVYKPTDQRFEDLTTHRCDFQGLIGETAKL 198
Query: 255 LKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPPEDRMDLLTTVQAHYTCP 314
+P+ + F +TEFR+ +Q W +P K YVPP M L +T Y
Sbjct: 199 CRPVHTRVTQNALFEGSTEFRESFQPWEIPPPEVKKVPEYVPPTGSMLLNSTSHLDYVPY 258
Query: 315 KGAPAQSCRPALQIKKCG-RFEGSSTTKDDYKQWSSMRTEPVKPVPQLDLPTEPLDCLTT 373
+ RP Q + F+G S K+D+ W S R +K Q+ P+ D L+T
Sbjct: 259 QANHVVPIRPVSQKRSNNFPFQGKSIMKEDFPAWESCRQGLIKKQQQIPNPSGKFDGLST 318
Query: 374 TRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRCLASYPEPPGYTFE 433
R+HYVPH I T+SCKP + +VP + T Y++ +TPK C ASYP PPGY F+
Sbjct: 319 FRSHYVPHELIPTESCKPLNIAFKSSVPFDDVTMYSVEYTPKRQEICPASYPSPPGYIFD 378
Query: 434 EVDALGHRIYKPVSQA 449
++ GH+ ++ + A
Sbjct: 379 NTNSQGHKFFRKIIPA 394
Score = 75.9 bits (185), Expect = 8e-14
Identities = 44/145 (30%), Positives = 70/145 (48%)
Query: 67 EGLTTSRRDFGPHKVAPVKVHQYDQFVPSEENMDLLTTYKKDYNPYPVCRVDPIKPRDSK 126
EG T R F P ++ P +V + ++VP +M L +T DY PY V PI+P K
Sbjct: 213 EGSTEFRESFQPWEIPPPEVKKVPEYVPPTGSMLLNSTSHLDYVPYQANHVVPIRPVSQK 272
Query: 127 YPCSDKMECLPTYKADYLPWNQPRREPLRLEHKYQPASVRFDNRTTHQDDYPIKGLVKTI 186
+ + K D+ W R+ ++ + + S +FD +T + Y L+ T
Sbjct: 273 RSNNFPFQGKSIMKEDFPAWESCRQGLIKKQQQIPNPSGKFDGLSTFRSHYVPHELIPTE 332
Query: 187 SCKPLAMPKLCNIPLEDVTNYKMSY 211
SCKPL + ++P +DVT Y + Y
Sbjct: 333 SCKPLNIAFKSSVPFDDVTMYSVEY 357
>gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
Length = 439
Score = 39.3 bits (90), Expect = 0.008
Identities = 69/345 (20%), Positives = 116/345 (33%), Gaps = 51/345 (14%)
Query: 106 KKDYNPYPVCRVDP-IKPRDSKYPCSDKMECLPTYKADYLPWNQPRREPLRLEHKYQPAS 164
++DY + V R +P +PR P E Y+ D+ W PRR +H + P
Sbjct: 122 RQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRG----DHPWIPKP 177
Query: 165 VRFD--------------NRTTHQDDYPIKGLVKTISCKP-------LAMPKLCNIPLED 203
V+ R Q+ +P++ + + LA K D
Sbjct: 178 VQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERD 237
Query: 204 VTNYKMSYVAHPVEKRFVHEAEKFRPCEIPFESLTTQKQSYRGLMGEPAKSLKPLARPPG 263
A P V AE + P + Q Q+ G + L R
Sbjct: 238 TRRK-----AGPAW--IVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIR 290
Query: 264 LDMPFCNTTEFRDKYQAWP--MPRMFSKAPITYVPPEDRMDLLTTVQAHYTCPKGAPAQS 321
++ ++ +R++++AW P KA Y PP+D+M T+ A + P +
Sbjct: 291 EEVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTA 350
Query: 322 CRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKPVPQLDLPTEPLDCLTTTRAHYVPH 381
+ D ++ S+ +EP K P+++ P+ T A + P
Sbjct: 351 DNKVI----------------DRRRIRSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPT 394
Query: 382 LPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRCLASYPE 426
K + + + S T KEM LA E
Sbjct: 395 RKAKDKQAVSGQAAKKKSAEGPSTTKPDDKEQSKEMNNKLAEAKE 439
Score = 33.5 bits (75), Expect = 0.43
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 238 TTQKQSYRGL-MGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPR 285
+ +Q YR + P S +P + D PF T+++ ++AWP+PR
Sbjct: 119 SVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPR 167
>gi|48375173 microtubule-associated protein 6 isoform 1 [Homo
sapiens]
Length = 813
Score = 39.3 bits (90), Expect = 0.008
Identities = 69/345 (20%), Positives = 116/345 (33%), Gaps = 51/345 (14%)
Query: 106 KKDYNPYPVCRVDP-IKPRDSKYPCSDKMECLPTYKADYLPWNQPRREPLRLEHKYQPAS 164
++DY + V R +P +PR P E Y+ D+ W PRR +H + P
Sbjct: 122 RQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPRRG----DHPWIPKP 177
Query: 165 VRFD--------------NRTTHQDDYPIKGLVKTISCKP-------LAMPKLCNIPLED 203
V+ R Q+ +P++ + + LA K D
Sbjct: 178 VQISAASQASAPILGAPKRRPQSQERWPVQAAAEAREQEAAPGGAGGLAAGKASGADERD 237
Query: 204 VTNYKMSYVAHPVEKRFVHEAEKFRPCEIPFESLTTQKQSYRGLMGEPAKSLKPLARPPG 263
A P V AE + P + Q Q+ G + L R
Sbjct: 238 TRRK-----AGPAW--IVRRAEGLGHEQTPLPAAQAQVQATGPEAGRGRAAADALNRQIR 290
Query: 264 LDMPFCNTTEFRDKYQAWP--MPRMFSKAPITYVPPEDRMDLLTTVQAHYTCPKGAPAQS 321
++ ++ +R++++AW P KA Y PP+D+M T+ A + P +
Sbjct: 291 EEVASAVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTTA 350
Query: 322 CRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKPVPQLDLPTEPLDCLTTTRAHYVPH 381
+ D ++ S+ +EP K P+++ P+ T A + P
Sbjct: 351 DNKVI----------------DRRRIRSLYSEPFKEPPKVEKPSVQSSKPKKTSASHKPT 394
Query: 382 LPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRCLASYPE 426
K + + + S T KEM LA E
Sbjct: 395 RKAKDKQAVSGQAAKKKSAEGPSTTKPDDKEQSKEMNNKLAEAKE 439
Score = 33.5 bits (75), Expect = 0.43
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 238 TTQKQSYRGL-MGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPR 285
+ +Q YR + P S +P + D PF T+++ ++AWP+PR
Sbjct: 119 SVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFERETQYQKDFRAWPLPR 167
>gi|47271475 SPOC domain containing 1 [Homo sapiens]
Length = 1216
Score = 30.4 bits (67), Expect = 3.7
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 332 GRFEGSSTTKDDYKQWSSMRTE---PVKPVPQLDLPTEPLDCLTTTRAHYVPHLPINTKS 388
G FE + + D+ Q + +T P P + PTEP D + + H VP P
Sbjct: 804 GSFEAAKSCGDNIFQKALSQTPMPAPEMPKTRELSPTEPQDRVPPSGLH-VPAAPTKALP 862
Query: 389 CKPHWSG 395
C P W G
Sbjct: 863 CLPPWEG 869
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 30.0 bits (66), Expect = 4.8
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 17/182 (9%)
Query: 247 LMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPPEDRMDLLTT 306
++ +P + + P L P T K A P+ + I P + TT
Sbjct: 193 VLAKPTPKAETTTKGPALTTPK-EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTT 251
Query: 307 VQAHYTCPKG-APAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKPVPQLDLPT 365
++ T PK AP + PA K E + TT K+ + T+ P+ PT
Sbjct: 252 TKSAPTTPKEPAPTTTKEPAPTTPK----EPAPTTT---KEPAPTTTKSAPTTPKEPAPT 304
Query: 366 EPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRCLASYP 425
P TT P P T +P + P+ P + T TPKE P
Sbjct: 305 TPKKPAPTT-----PKEPAPTTPKEPTPTTPKEPAPTTKEPAPT---TPKEPAPTAPKKP 356
Query: 426 EP 427
P
Sbjct: 357 AP 358
Score = 30.0 bits (66), Expect = 4.8
Identities = 46/200 (23%), Positives = 61/200 (30%), Gaps = 15/200 (7%)
Query: 238 TTQKQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPP 297
TT K+ EPA + P P TT+ P P AP T P
Sbjct: 359 TTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTT---P 415
Query: 298 EDRMDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKP 357
++ T A T + AP +PA K E + TT + ++ + P P
Sbjct: 416 KEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPK----EPAPTTPKEPAPTTTKKPAPTTP 471
Query: 358 ------VPQLDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTIS 411
P+ PT P TT P P P P P E T
Sbjct: 472 KEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAP--TTPEEPTPTTPEE 529
Query: 412 FTPKEMGRCLASYPEPPGYT 431
P + P+ P T
Sbjct: 530 PAPTTPKAAAPNTPKEPAPT 549
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 30.0 bits (66), Expect = 4.8
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 17/182 (9%)
Query: 247 LMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPPEDRMDLLTT 306
++ +P + + P L P T K A P+ + I P + TT
Sbjct: 234 VLAKPTPKAETTTKGPALTTPK-EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTT 292
Query: 307 VQAHYTCPKG-APAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKPVPQLDLPT 365
++ T PK AP + PA K E + TT K+ + T+ P+ PT
Sbjct: 293 TKSAPTTPKEPAPTTTKEPAPTTPK----EPAPTTT---KEPAPTTTKSAPTTPKEPAPT 345
Query: 366 EPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRCLASYP 425
P TT P P T +P + P+ P + T TPKE P
Sbjct: 346 TPKKPAPTT-----PKEPAPTTPKEPTPTTPKEPAPTTKEPAPT---TPKEPAPTAPKKP 397
Query: 426 EP 427
P
Sbjct: 398 AP 399
Score = 30.0 bits (66), Expect = 4.8
Identities = 46/200 (23%), Positives = 61/200 (30%), Gaps = 15/200 (7%)
Query: 238 TTQKQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPP 297
TT K+ EPA + P P TT+ P P AP T P
Sbjct: 400 TTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTT---P 456
Query: 298 EDRMDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKP 357
++ T A T + AP +PA K E + TT + ++ + P P
Sbjct: 457 KEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPK----EPAPTTPKEPAPTTTKKPAPTTP 512
Query: 358 ------VPQLDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTIS 411
P+ PT P TT P P P P P E T
Sbjct: 513 KEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAP--TTPEEPTPTTPEE 570
Query: 412 FTPKEMGRCLASYPEPPGYT 431
P + P+ P T
Sbjct: 571 PAPTTPKAAAPNTPKEPAPT 590
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 30.0 bits (66), Expect = 4.8
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 17/182 (9%)
Query: 247 LMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPPEDRMDLLTT 306
++ +P + + P L P T K A P+ + I P + TT
Sbjct: 286 VLAKPTPKAETTTKGPALTTPK-EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTT 344
Query: 307 VQAHYTCPKG-APAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKPVPQLDLPT 365
++ T PK AP + PA K E + TT K+ + T+ P+ PT
Sbjct: 345 TKSAPTTPKEPAPTTTKEPAPTTPK----EPAPTTT---KEPAPTTTKSAPTTPKEPAPT 397
Query: 366 EPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRCLASYP 425
P TT P P T +P + P+ P + T TPKE P
Sbjct: 398 TPKKPAPTT-----PKEPAPTTPKEPTPTTPKEPAPTTKEPAPT---TPKEPAPTAPKKP 449
Query: 426 EP 427
P
Sbjct: 450 AP 451
Score = 30.0 bits (66), Expect = 4.8
Identities = 46/200 (23%), Positives = 61/200 (30%), Gaps = 15/200 (7%)
Query: 238 TTQKQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPP 297
TT K+ EPA + P P TT+ P P AP T P
Sbjct: 452 TTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTT---P 508
Query: 298 EDRMDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKP 357
++ T A T + AP +PA K E + TT + ++ + P P
Sbjct: 509 KEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPK----EPAPTTPKEPAPTTTKKPAPTTP 564
Query: 358 ------VPQLDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTIS 411
P+ PT P TT P P P P P E T
Sbjct: 565 KEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAP--TTPEEPTPTTPEE 622
Query: 412 FTPKEMGRCLASYPEPPGYT 431
P + P+ P T
Sbjct: 623 PAPTTPKAAAPNTPKEPAPT 642
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 30.0 bits (66), Expect = 4.8
Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 17/182 (9%)
Query: 247 LMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPPEDRMDLLTT 306
++ +P + + P L P T K A P+ + I P + TT
Sbjct: 327 VLAKPTPKAETTTKGPALTTPK-EPTPTTPKEPASTTPKEPTPTTIKSAPTTPKEPAPTT 385
Query: 307 VQAHYTCPKG-APAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKPVPQLDLPT 365
++ T PK AP + PA K E + TT K+ + T+ P+ PT
Sbjct: 386 TKSAPTTPKEPAPTTTKEPAPTTPK----EPAPTTT---KEPAPTTTKSAPTTPKEPAPT 438
Query: 366 EPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRCLASYP 425
P TT P P T +P + P+ P + T TPKE P
Sbjct: 439 TPKKPAPTT-----PKEPAPTTPKEPTPTTPKEPAPTTKEPAPT---TPKEPAPTAPKKP 490
Query: 426 EP 427
P
Sbjct: 491 AP 492
Score = 30.0 bits (66), Expect = 4.8
Identities = 46/200 (23%), Positives = 61/200 (30%), Gaps = 15/200 (7%)
Query: 238 TTQKQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQAWPMPRMFSKAPITYVPP 297
TT K+ EPA + P P TT+ P P AP T P
Sbjct: 493 TTPKEPAPTTPKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTT---P 549
Query: 298 EDRMDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSMRTEPVKP 357
++ T A T + AP +PA K E + TT + ++ + P P
Sbjct: 550 KEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPK----EPAPTTPKEPAPTTTKKPAPTTP 605
Query: 358 ------VPQLDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTIS 411
P+ PT P TT P P P P P E T
Sbjct: 606 KEPAPTTPKETAPTTPKKLTPTTPEKLAPTTPEKPAPTTPEELAP--TTPEEPTPTTPEE 663
Query: 412 FTPKEMGRCLASYPEPPGYT 431
P + P+ P T
Sbjct: 664 PAPTTPKAAAPNTPKEPAPT 683
>gi|122114658 hypothetical protein LOC23053 [Homo sapiens]
Length = 1842
Score = 29.6 bits (65), Expect = 6.2
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 376 AHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRCLASYPEP 427
AH +PH+P P + P+G P Y S TP + S+P P
Sbjct: 1534 AHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYPYSVTPPSLAATAVSFPVP 1585
>gi|239753437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 29.3 bits (64), Expect = 8.1
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 137 PTYKADYLPWNQPRREPLRLEHKYQPASVRFDNRTTHQDDYPIKGLVKTISC 188
P + PW EP + K+ A F +R TH D +P+ ++ SC
Sbjct: 105 PLAHQGHAPW-----EPQNGQKKFPRARKHFPHRNTHVDTHPLSAGMQLASC 151
>gi|239748002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 29.3 bits (64), Expect = 8.1
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 137 PTYKADYLPWNQPRREPLRLEHKYQPASVRFDNRTTHQDDYPIKGLVKTISC 188
P + PW EP + K+ A F +R TH D +P+ ++ SC
Sbjct: 105 PLAHQGHAPW-----EPQNGQKKFPRARKHFPHRNTHVDTHPLSAGMQLASC 151
>gi|239741900 PREDICTED: hypothetical protein XP_002342343 [Homo
sapiens]
Length = 157
Score = 29.3 bits (64), Expect = 8.1
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 137 PTYKADYLPWNQPRREPLRLEHKYQPASVRFDNRTTHQDDYPIKGLVKTISC 188
P + PW EP + K+ A F +R TH D +P+ ++ SC
Sbjct: 105 PLAHQGHAPW-----EPQNGQKKFPRARKHFPHRNTHVDTHPLSAGMQLASC 151
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,426,714
Number of Sequences: 37866
Number of extensions: 1193279
Number of successful extensions: 2720
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2636
Number of HSP's gapped (non-prelim): 48
length of query: 474
length of database: 18,247,518
effective HSP length: 106
effective length of query: 368
effective length of database: 14,233,722
effective search space: 5238009696
effective search space used: 5238009696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.