Search of human proteins with 239758109

Search of human proteins with 239758109

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239758109 PREDICTED: hypothetical protein [Homo sapiens]
         (139 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239758109 PREDICTED: hypothetical protein [Homo sapiens]           292   7e-80
gi|239750232 PREDICTED: hypothetical protein XP_002347325 [Homo ...   289   4e-79
gi|239743801 PREDICTED: hypothetical protein XP_002342960 [Homo ...    80   7e-16
gi|117938272 jumpy isoform 1 [Homo sapiens]                            29   1.1  
gi|4758074 crystallin, beta B3 [Homo sapiens]                          28   3.1  
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    27   4.1  
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    27   4.1  
gi|27477122 intestinal cell kinase [Homo sapiens]                      27   4.1  
gi|7662388 intestinal cell kinase [Homo sapiens]                       27   4.1  
gi|239746532 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]        27   7.0  
gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo...    27   7.0  
gi|239752226 PREDICTED: hypothetical protein XP_002348164 [Homo ...    26   9.1  
gi|4505101 microtubule-associated protein 7 [Homo sapiens]             26   9.1  
gi|7662018 PHD finger protein 3 [Homo sapiens]                         26   9.1  
gi|160333411 early B-cell factor 4 [Homo sapiens]                      26   9.1  

>gi|239758109 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 139

 Score =  292 bits (747), Expect = 7e-80
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MRDSCFLKHGESPKWPVWKRKESEDTMLRFHASLEVSVSPQSSGNKQSTWSRFWGPETRE 60
           MRDSCFLKHGESPKWPVWKRKESEDTMLRFHASLEVSVSPQSSGNKQSTWSRFWGPETRE
Sbjct: 1   MRDSCFLKHGESPKWPVWKRKESEDTMLRFHASLEVSVSPQSSGNKQSTWSRFWGPETRE 60

Query: 61  QQDPLQRAKERGIRNLGSLGLSVTPVWVGVSALRSVSGSAWGYVICEPSPGFARGLGSAF 120
           QQDPLQRAKERGIRNLGSLGLSVTPVWVGVSALRSVSGSAWGYVICEPSPGFARGLGSAF
Sbjct: 61  QQDPLQRAKERGIRNLGSLGLSVTPVWVGVSALRSVSGSAWGYVICEPSPGFARGLGSAF 120

Query: 121 SCQALHGDAEEAGGTRVGE 139
           SCQALHGDAEEAGGTRVGE
Sbjct: 121 SCQALHGDAEEAGGTRVGE 139


>gi|239750232 PREDICTED: hypothetical protein XP_002347325 [Homo
           sapiens]
          Length = 139

 Score =  289 bits (740), Expect = 4e-79
 Identities = 137/139 (98%), Positives = 139/139 (100%)

Query: 1   MRDSCFLKHGESPKWPVWKRKESEDTMLRFHASLEVSVSPQSSGNKQSTWSRFWGPETRE 60
           MRDSCFL+HGESPKWPVWKRKESEDTMLRFHASLEVSVSPQSSGNKQSTWSRFWGPETRE
Sbjct: 1   MRDSCFLQHGESPKWPVWKRKESEDTMLRFHASLEVSVSPQSSGNKQSTWSRFWGPETRE 60

Query: 61  QQDPLQRAKERGIRNLGSLGLSVTPVWVGVSALRSVSGSAWGYVICEPSPGFARGLGSAF 120
           QQDPLQRAKERGIRNLGSLGLSVTPVWVGVSALRSV+GSAWGYVICEPSPGFARGLGSAF
Sbjct: 61  QQDPLQRAKERGIRNLGSLGLSVTPVWVGVSALRSVAGSAWGYVICEPSPGFARGLGSAF 120

Query: 121 SCQALHGDAEEAGGTRVGE 139
           SCQALHGDAEEAGGTRVGE
Sbjct: 121 SCQALHGDAEEAGGTRVGE 139


>gi|239743801 PREDICTED: hypothetical protein XP_002342960 [Homo
          sapiens]
          Length = 78

 Score = 79.7 bits (195), Expect = 7e-16
 Identities = 44/72 (61%), Positives = 53/72 (73%), Gaps = 2/72 (2%)

Query: 27 MLRFHASLEVSVSPQSSGNKQSTWSRFWGPETREQQDPLQRAKERGIRNLGSLGLSVTPV 86
          ML FHA LEVS +PQSS N Q      +G +  EQQ PLQRAK+RGI+N  S+GLSVTPV
Sbjct: 1  MLVFHAFLEVSGAPQSSRNSQH--GHAFGGQKLEQQAPLQRAKKRGIQNHASVGLSVTPV 58

Query: 87 WVGVSALRSVSG 98
          W+G+SA  SV+G
Sbjct: 59 WMGLSASSSVAG 70


>gi|117938272 jumpy isoform 1 [Homo sapiens]
          Length = 598

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 9   HGESPKWPVWKRKE-SEDTMLRFHASLEVSVSPQSSGNKQSTWSRFWGPETREQQDPLQR 67
           H  SP+  +W R + SED +       E   S  SS N    + R  G    E   P   
Sbjct: 482 HSSSPQSVLWNRPQPSEDRLPSQQGLAEARSSSSSSSNHSDNFFRM-GSSPLEVPKPRLA 540

Query: 68  A---KERGIRNLGSLGLSVTPVWVGVSALRSVSGSAWGYVICEPSPGFARGLG 117
           A   +E  ++ + S  L+     VG+ A+      A G ++ +    FARG+G
Sbjct: 541 ALSDRETRLQEVRSAFLAAYSSTVGLRAVAPSPSGAIGGLLEQ----FARGVG 589


>gi|4758074 crystallin, beta B3 [Homo sapiens]
          Length = 211

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 7   LKHGESPKWPVWKRKESEDTMLRF--------HASLEVSVSPQSSGNK 46
           L+ G+ P+W  W      D++L          H  L +  +P  SG K
Sbjct: 81  LEKGDYPRWDAWSNSRDSDSLLSLRPLNIDSPHHKLHLFENPAFSGRK 128


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 108 PSPGFARGLGSAFSCQALHGDAEEAGGTRVG 138
           P P    GLG  F+ Q   G  E+AGG ++G
Sbjct: 167 PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLG 197


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 108 PSPGFARGLGSAFSCQALHGDAEEAGGTRVG 138
           P P    GLG  F+ Q   G  E+AGG ++G
Sbjct: 98  PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLG 128


>gi|27477122 intestinal cell kinase [Homo sapiens]
          Length = 632

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 19  KRKESEDTMLRFHASLEVSVS-PQSSGNKQSTWSRFWGPET 58
           K+++S+DT+ RF + L++  S P  +GN   T + +   +T
Sbjct: 438 KKRQSDDTLCRFESVLDLKPSEPVGTGNSAPTQTSYQRRDT 478


>gi|7662388 intestinal cell kinase [Homo sapiens]
          Length = 632

 Score = 27.3 bits (59), Expect = 4.1
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 19  KRKESEDTMLRFHASLEVSVS-PQSSGNKQSTWSRFWGPET 58
           K+++S+DT+ RF + L++  S P  +GN   T + +   +T
Sbjct: 438 KKRQSDDTLCRFESVLDLKPSEPVGTGNSAPTQTSYQRRDT 478


>gi|239746532 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]
          Length = 345

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 14/41 (34%), Positives = 15/41 (36%)

Query: 98  GSAWGYVICEPSPGFARGLGSAFSCQALHGDAEEAGGTRVG 138
           G AWG        G AR  G       LH +A    G R G
Sbjct: 4   GRAWGMRRAAAGAGGARAAGPTGGASRLHPNAGRRSGARAG 44


>gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo
           sapiens]
          Length = 674

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 29  RFHASLEVSVSPQSSGNKQSTWSRFWGPETREQQDPLQRAKERG 72
           R   + + SVSP+SSG+   +W    G  + E+++   +   +G
Sbjct: 239 RSKGARKTSVSPRSSGSDPRSWEYRSGEASEEKEEKAHKETGKG 282


>gi|239752226 PREDICTED: hypothetical protein XP_002348164 [Homo
           sapiens]
          Length = 661

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 20  RKESEDTMLRFHASLEVSVSPQSSGNKQSTW-SRFWGPETREQQDPLQRAKERGIRNLGS 78
           R+   D  +   A +  ++   + G+    W S+ WGP T  Q+ PL  A E      G 
Sbjct: 425 RERPRDLTVDLRALVSAALLLGAVGSCLRGWESKHWGPPTSGQELPLPPACESSELLCGD 484

Query: 79  LGLSVTP 85
             LS  P
Sbjct: 485 KCLSTAP 491


>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
          Length = 749

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 19  KRKESEDTMLRFHASLEVSVSPQSSGNKQSTWSRFWGPETREQQDPLQR-AKERGIR 74
           +R+E E+   +    L   V+ + +  ++    R    + RE+++ LQR A+ER +R
Sbjct: 500 ERREQEELERQKREELAQRVAEERTTRREEESRRLEAEQAREKEEQLQRQAEERALR 556


>gi|7662018 PHD finger protein 3 [Homo sapiens]
          Length = 2039

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 2   RDSCFLKHGESPKWPVWKRKESEDTMLRFHASLEVSVS-PQSSGNKQSTWSRFWGPETRE 60
           R+S   +  E  KW +   ++    +L   +S E S   P+ S     T  +   P T E
Sbjct: 838 RNSSDCRDNEIKKWQLAPLRKMGQPVLPRRSSEEKSEKIPKESTTVTCTGEKASKPGTHE 897

Query: 61  QQDPLQRAKERGIRNL 76
           +Q+  ++  E+G+ N+
Sbjct: 898 KQEMKKKKVEKGVLNV 913


>gi|160333411 early B-cell factor 4 [Homo sapiens]
          Length = 598

 Score = 26.2 bits (56), Expect = 9.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 85  PVWVGVSALRSVSGSAWGYVICEPSPGFARGLGSA 119
           P  VG++A  S    A G     P PG+AR   SA
Sbjct: 421 PAVVGINAFSSPLAIAVGDATPGPEPGYARSCSSA 455


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,034,709
Number of Sequences: 37866
Number of extensions: 252456
Number of successful extensions: 518
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 17
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.