Search of human proteins with 239757451

Search of human proteins with 239757451

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757451 PREDICTED: similar to hCG1812873 [Homo sapiens]
         (116 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757451 PREDICTED: similar to hCG1812873 [Homo sapiens]          239   4e-64
gi|239751968 PREDICTED: hypothetical protein XP_002348050 [Homo ...   239   4e-64
gi|239746450 PREDICTED: hypothetical protein XP_002344213 [Homo ...   239   4e-64
gi|7019493 DNA-directed DNA polymerase mu [Homo sapiens]               28   1.6  
gi|239753565 PREDICTED: hypothetical protein [Homo sapiens]            28   2.0  
gi|239748093 PREDICTED: hypothetical protein XP_002346551 [Homo ...    28   2.0  
gi|239741989 PREDICTED: hypothetical protein XP_002342387 [Homo ...    28   2.0  
gi|239757861 PREDICTED: similar to armadillo repeat containing, ...    27   4.5  
gi|14780904 kelch-like 1 protein [Homo sapiens]                        27   4.5  
gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]             27   4.5  
gi|117168250 phospholipase C, epsilon 1 [Homo sapiens]                 26   5.9  
gi|239754965 PREDICTED: hypothetical protein [Homo sapiens]            26   7.7  
gi|239749521 PREDICTED: hypothetical protein XP_002347072 [Homo ...    26   7.7  
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ...    26   7.7  
gi|27735143 discoidin, CUB and LCCL domain containing 1 [Homo sa...    26   7.7  

>gi|239757451 PREDICTED: similar to hCG1812873 [Homo sapiens]
          Length = 116

 Score =  239 bits (609), Expect = 4e-64
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60
           MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW
Sbjct: 1   MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60

Query: 61  VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116
           VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG
Sbjct: 61  VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116


>gi|239751968 PREDICTED: hypothetical protein XP_002348050 [Homo
           sapiens]
          Length = 116

 Score =  239 bits (609), Expect = 4e-64
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60
           MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW
Sbjct: 1   MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60

Query: 61  VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116
           VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG
Sbjct: 61  VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116


>gi|239746450 PREDICTED: hypothetical protein XP_002344213 [Homo
           sapiens]
          Length = 116

 Score =  239 bits (609), Expect = 4e-64
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60
           MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW
Sbjct: 1   MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60

Query: 61  VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116
           VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG
Sbjct: 61  VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116


>gi|7019493 DNA-directed DNA polymerase mu [Homo sapiens]
          Length = 494

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 2   PGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCG---GPLSSGWI 46
           PG   PA+  I    +S+ A +PV  +C    L V G   GPLS  W+
Sbjct: 92  PGCTPPALLDISWLTESLGAGQPVPVEC-RHRLEVAGPRKGPLSPAWM 138


>gi|239753565 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 135

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 40  PLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQNPSSTW 82
           P    W+G R     RG   W++LGP + LG    ++    +W
Sbjct: 85  PRRGPWLGWRSD--HRGGRSWLLLGPLRGLGTAAGSERAKRSW 125


>gi|239748093 PREDICTED: hypothetical protein XP_002346551 [Homo
           sapiens]
          Length = 135

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 40  PLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQNPSSTW 82
           P    W+G R     RG   W++LGP + LG    ++    +W
Sbjct: 85  PRRGPWLGWRSD--HRGGRSWLLLGPLRGLGTAAGSERAKRSW 125


>gi|239741989 PREDICTED: hypothetical protein XP_002342387 [Homo
           sapiens]
          Length = 135

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 40  PLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQNPSSTW 82
           P    W+G R     RG   W++LGP + LG    ++    +W
Sbjct: 85  PRRGPWLGWRSD--HRGGRSWLLLGPLRGLGTAAGSERAKRSW 125


>gi|239757861 PREDICTED: similar to armadillo repeat containing,
            X-linked 4 [Homo sapiens]
          Length = 2382

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 7/71 (9%)

Query: 37   CGGPLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKP 96
            C       W G R      G G W   G   + GL    Q    TWA     G A +   
Sbjct: 1250 CDETSVKSWAGARAE-NVVGIGTWARAGEQASGGLWAGGQTSEGTWAGDKASGGAWT--- 1305

Query: 97   SQGGAQDQQQG 107
               GA++Q  G
Sbjct: 1306 ---GAENQASG 1313


>gi|14780904 kelch-like 1 protein [Homo sapiens]
          Length = 748

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 35  PVCGGPLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQNPSST-WAALSFHGSALS 93
           P  GGP   G       L+  G G +   GPS++  L  Q ++  ST W   S   S+ S
Sbjct: 27  PSTGGPAGGG------CLQQDGSGSFEHWGPSQSRLLKSQERSGVSTFWKKPSSSSSSSS 80

Query: 94  EKPSQGGAQDQQQGMLL 110
              S   + +   G LL
Sbjct: 81  SPSSSSSSFNPLNGTLL 97


>gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]
          Length = 880

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 61  VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGG 100
           V  GP    G +   Q+   T A+LS  G+ + + P QGG
Sbjct: 685 VTPGPGSLKGKLGARQSGPRTKASLSAKGTHMRKVPPQGG 724


>gi|117168250 phospholipase C, epsilon 1 [Homo sapiens]
          Length = 2302

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 71   LMDQNQNPSSTWAALSFHG 89
            L   N++PSS W++ S+HG
Sbjct: 1176 LSSSNKSPSSAWSSSSWHG 1194


>gi|239754965 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 213

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 1  MPGEA--TPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGP 40
          +PGEA   P+++  Q    ++ AD PVS   P Q L   GGP
Sbjct: 37 LPGEAGQDPSLKPSQGGT-ALLADPPVSDFRPPQLLTCLGGP 77


>gi|239749521 PREDICTED: hypothetical protein XP_002347072 [Homo
          sapiens]
          Length = 184

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 1  MPGEA--TPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGP 40
          +PGEA   P+++  Q    ++ AD PVS   P Q L   GGP
Sbjct: 37 LPGEAGQDPSLKPSQGGT-ALLADPPVSDFRPPQLLTCLGGP 77


>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
          sapiens]
          Length = 329

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 1  MPGEA--TPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGP 40
          +PGEA   P+++  Q    ++ AD PVS   P Q L   GGP
Sbjct: 37 LPGEAGQDPSLKPSQGGT-ALLADPPVSDFRPPQLLTCLGGP 77


>gi|27735143 discoidin, CUB and LCCL domain containing 1 [Homo
           sapiens]
          Length = 539

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 39  GPLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQ-NPSSTWAALSFHGSALSEKPS 97
           G L++G +    SL  + R L+   G S++L      Q   SS+W +++  G  +   P 
Sbjct: 230 GILANGVLSRDGSLSDK-RFLFTSNGCSRSLSFEPDGQIRASSSWQSVNESGDQVHWSPG 288

Query: 98  QGGAQDQ 104
           Q   QDQ
Sbjct: 289 QARLQDQ 295


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.131    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,071,613
Number of Sequences: 37866
Number of extensions: 219164
Number of successful extensions: 386
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 15
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.