Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239756827
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756827 PREDICTED: hypothetical protein [Homo sapiens]
(332 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756827 PREDICTED: hypothetical protein [Homo sapiens] 662 0.0
gi|239751324 PREDICTED: hypothetical protein XP_002347807 [Homo ... 253 2e-67
gi|239745823 PREDICTED: hypothetical protein XP_002343600 [Homo ... 253 2e-67
gi|157951704 Fanconi anemia core complex 100 kDa subunit isoform... 40 0.004
gi|157951702 Fanconi anemia core complex 100 kDa subunit isoform... 40 0.004
gi|227430303 CD109 antigen isoform 3 precursor [Homo sapiens] 30 3.0
gi|227430301 CD109 antigen isoform 2 precursor [Homo sapiens] 30 3.0
gi|115529484 CD109 antigen isoform 1 precursor [Homo sapiens] 30 3.0
gi|6005862 mitochondrial ribosomal protein L3 [Homo sapiens] 30 3.9
gi|66529203 hypothetical protein LOC57714 [Homo sapiens] 30 3.9
gi|239745655 PREDICTED: family with sequence similarity 157, mem... 29 5.1
gi|40807471 transcription termination factor, RNA polymerase II ... 29 5.1
gi|148596977 zinc finger protein 31 [Homo sapiens] 29 6.7
gi|91992155 hydrogen voltage-gated channel 1 [Homo sapiens] 28 8.7
gi|91992153 hydrogen voltage-gated channel 1 [Homo sapiens] 28 8.7
>gi|239756827 PREDICTED: hypothetical protein [Homo sapiens]
Length = 332
Score = 662 bits (1707), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60
MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP
Sbjct: 1 MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60
Query: 61 LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120
LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP
Sbjct: 61 LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120
Query: 121 TLHQEATAIGAGALERKPGLPTLIWASRFLRMRMCAHHLFLLLDDVGQLRVGDAGIQLTL 180
TLHQEATAIGAGALERKPGLPTLIWASRFLRMRMCAHHLFLLLDDVGQLRVGDAGIQLTL
Sbjct: 121 TLHQEATAIGAGALERKPGLPTLIWASRFLRMRMCAHHLFLLLDDVGQLRVGDAGIQLTL 180
Query: 181 HQRRSLVVLDVAQRGWTELPQPPGKGPVWDEATGHLLFEVADGVLVGVGEEVENVVLDVI 240
HQRRSLVVLDVAQRGWTELPQPPGKGPVWDEATGHLLFEVADGVLVGVGEEVENVVLDVI
Sbjct: 181 HQRRSLVVLDVAQRGWTELPQPPGKGPVWDEATGHLLFEVADGVLVGVGEEVENVVLDVI 240
Query: 241 LLQVVHQRRATGCCMPHILLLRTGPNSGVGRGLGLGPGSRAHLDLLIRGDSTEDNLREAL 300
LLQVVHQRRATGCCMPHILLLRTGPNSGVGRGLGLGPGSRAHLDLLIRGDSTEDNLREAL
Sbjct: 241 LLQVVHQRRATGCCMPHILLLRTGPNSGVGRGLGLGPGSRAHLDLLIRGDSTEDNLREAL 300
Query: 301 GGKHAEADATDDPPILDQGQSLVLPKREGGMS 332
GGKHAEADATDDPPILDQGQSLVLPKREGGMS
Sbjct: 301 GGKHAEADATDDPPILDQGQSLVLPKREGGMS 332
>gi|239751324 PREDICTED: hypothetical protein XP_002347807 [Homo
sapiens]
Length = 183
Score = 253 bits (645), Expect = 2e-67
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60
MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP
Sbjct: 1 MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60
Query: 61 LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120
LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP
Sbjct: 61 LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120
Query: 121 TLHQEATAI 129
TLHQEATAI
Sbjct: 121 TLHQEATAI 129
>gi|239745823 PREDICTED: hypothetical protein XP_002343600 [Homo
sapiens]
Length = 183
Score = 253 bits (645), Expect = 2e-67
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60
MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP
Sbjct: 1 MGLLVNEASLLELEVEELLQGAGTAAVLAVRGVVLATVGDDPLQVGHKELPGHVVAASQP 60
Query: 61 LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120
LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP
Sbjct: 61 LSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGTGVRLERRAGLGTALLRPRQPETTTHP 120
Query: 121 TLHQEATAI 129
TLHQEATAI
Sbjct: 121 TLHQEATAI 129
>gi|157951704 Fanconi anemia core complex 100 kDa subunit isoform a
[Homo sapiens]
Length = 730
Score = 39.7 bits (91), Expect = 0.004
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 264 GPNSGVGRGLGLGPGSRAHLDLLIRGDSTED-NLREALGGKHAEADATDDPPILDQGQSL 322
GP + L LGPG LDL + T +LRE +GG A +D+ D P LD+ S
Sbjct: 422 GPGARREVTLPLGPGENGGLDLPVTVSCTLFYSLREVVGGALAPSDSED--PFLDECPSD 479
Query: 323 VLPKREG 329
VLP++EG
Sbjct: 480 VLPEQEG 486
>gi|157951702 Fanconi anemia core complex 100 kDa subunit isoform b
[Homo sapiens]
Length = 881
Score = 39.7 bits (91), Expect = 0.004
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 264 GPNSGVGRGLGLGPGSRAHLDLLIRGDSTED-NLREALGGKHAEADATDDPPILDQGQSL 322
GP + L LGPG LDL + T +LRE +GG A +D+ D P LD+ S
Sbjct: 573 GPGARREVTLPLGPGENGGLDLPVTVSCTLFYSLREVVGGALAPSDSED--PFLDECPSD 630
Query: 323 VLPKREG 329
VLP++EG
Sbjct: 631 VLPEQEG 637
>gi|227430303 CD109 antigen isoform 3 precursor [Homo sapiens]
Length = 1368
Score = 30.0 bits (66), Expect = 3.0
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 175 GIQLTLHQRRSLVVLDVAQRGWTE 198
G QLTL +RR+ VV+ V QR +TE
Sbjct: 300 GNQLTLEERRNNVVITVTQRNYTE 323
>gi|227430301 CD109 antigen isoform 2 precursor [Homo sapiens]
Length = 1428
Score = 30.0 bits (66), Expect = 3.0
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 175 GIQLTLHQRRSLVVLDVAQRGWTE 198
G QLTL +RR+ VV+ V QR +TE
Sbjct: 377 GNQLTLEERRNNVVITVTQRNYTE 400
>gi|115529484 CD109 antigen isoform 1 precursor [Homo sapiens]
Length = 1445
Score = 30.0 bits (66), Expect = 3.0
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 175 GIQLTLHQRRSLVVLDVAQRGWTE 198
G QLTL +RR+ VV+ V QR +TE
Sbjct: 377 GNQLTLEERRNNVVITVTQRNYTE 400
>gi|6005862 mitochondrial ribosomal protein L3 [Homo sapiens]
Length = 348
Score = 29.6 bits (65), Expect = 3.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 268 GVGRGLGLGPGSRAHLDLLIRG 289
G G G LGPG+R H+ L +RG
Sbjct: 19 GDGLGAALGPGNRTHIWLFVRG 40
>gi|66529203 hypothetical protein LOC57714 [Homo sapiens]
Length = 1063
Score = 29.6 bits (65), Expect = 3.9
Identities = 29/98 (29%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Query: 38 VGDDPLQVGHKELPGHVVAASQPLSHGLQVLTNGEADDLVVVRGLRLLHRLHEGPGT--G 95
VGD PLQ G + S Q T GE D + G R L + GP T G
Sbjct: 169 VGDSPLQAQALGEAGVATGSEAQSSPQFQDHTEGEDQDASIPSGGRGLSQEGTGPPTSAG 228
Query: 96 VRLERRAGLGTALLRPRQPETTTHPTLHQEATAIGAGA 133
R LL P ++ P + T AGA
Sbjct: 229 EGHSRTEDAAQELLLPESKGGSSEPGTELQTTEQQAGA 266
>gi|239745655 PREDICTED: family with sequence similarity 157, member
C [Homo sapiens]
Length = 387
Score = 29.3 bits (64), Expect = 5.1
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 83 RLLHRLH--EGPGTGVRLERRAGLGTALLRPRQPETTTHPTLHQEATAIGAGALERKPGL 140
RLLH LH P + + RR G A RPR PE P + L+R+PG
Sbjct: 158 RLLHDLHLLAFPTKCIWIHRR---GEATARPRAPEHPAPPATAVRGRDAASQNLKRRPGS 214
Query: 141 PT 142
T
Sbjct: 215 GT 216
>gi|40807471 transcription termination factor, RNA polymerase II
[Homo sapiens]
Length = 1162
Score = 29.3 bits (64), Expect = 5.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 138 PGLPTLIWASRFLRMRMCAHHLFLLLDDVGQLRVGDAGIQLTLHQRRSLVVL 189
P T+ S+ LR+R C HL LL + + + G+ L+L ++ S + L
Sbjct: 909 PRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTL 960
>gi|148596977 zinc finger protein 31 [Homo sapiens]
Length = 1043
Score = 28.9 bits (63), Expect = 6.7
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 297 REALG-GKHAEADATDDPPILDQGQSLVL 324
+EALG GKHAE + DPP D G S+ L
Sbjct: 227 QEALGPGKHAEKELCKDPPGDDCGNSVCL 255
>gi|91992155 hydrogen voltage-gated channel 1 [Homo sapiens]
Length = 273
Score = 28.5 bits (62), Expect = 8.7
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 215 HLLFEVADGVLVGVGEEVENVVLDVILLQVVHQRRATGCCMPHILLLRTGPNSGVGRGLG 274
H FE+ D V+V V + +LD++LL HQ A G ++LLR + + G+
Sbjct: 167 HHKFEILDAVVV-----VVSFILDIVLLFQEHQFEALGL----LILLRLWRVARIINGII 217
Query: 275 LGPGSRAHLDLL 286
+ +R+ LL
Sbjct: 218 ISVKTRSERQLL 229
>gi|91992153 hydrogen voltage-gated channel 1 [Homo sapiens]
Length = 273
Score = 28.5 bits (62), Expect = 8.7
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 215 HLLFEVADGVLVGVGEEVENVVLDVILLQVVHQRRATGCCMPHILLLRTGPNSGVGRGLG 274
H FE+ D V+V V + +LD++LL HQ A G ++LLR + + G+
Sbjct: 167 HHKFEILDAVVV-----VVSFILDIVLLFQEHQFEALGL----LILLRLWRVARIINGII 217
Query: 275 LGPGSRAHLDLL 286
+ +R+ LL
Sbjct: 218 ISVKTRSERQLL 229
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.140 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,272,244
Number of Sequences: 37866
Number of extensions: 687401
Number of successful extensions: 1754
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1745
Number of HSP's gapped (non-prelim): 16
length of query: 332
length of database: 18,247,518
effective HSP length: 103
effective length of query: 229
effective length of database: 14,347,320
effective search space: 3285536280
effective search space used: 3285536280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.