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Search of human proteins with 239756657
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756657 PREDICTED: hypothetical protein XP_002344969 [Homo
sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756657 PREDICTED: hypothetical protein XP_002344969 [Homo ... 271 1e-73
gi|239751140 PREDICTED: hypothetical protein XP_002347723 [Homo ... 271 1e-73
gi|239745633 PREDICTED: hypothetical protein XP_002344148 [Homo ... 271 1e-73
gi|4506403 G protein-coupled receptor, family C, group 5, member... 30 0.63
gi|48255947 plasma membrane calcium ATPase 1 isoform 1a [Homo sa... 29 1.1
gi|48255945 plasma membrane calcium ATPase 1 isoform 1b [Homo sa... 29 1.1
gi|190684671 mitogen-activated protein kinase binding protein 1 ... 29 1.1
gi|190684677 mitogen-activated protein kinase binding protein 1 ... 29 1.1
gi|155723000 mixed lineage kinase 4 [Homo sapiens] 29 1.4
gi|48255955 plasma membrane calcium ATPase 3 isoform 3b [Homo sa... 27 4.1
gi|48255953 plasma membrane calcium ATPase 3 isoform 3a [Homo sa... 27 4.1
gi|122937480 Ras association (RalGDS/AF-6) domain family (N-term... 27 7.0
gi|144226234 metastasis suppressor 1 [Homo sapiens] 27 7.0
gi|13899309 ribosomal protein S6 kinase-like 1 [Homo sapiens] 26 9.2
gi|187608784 transmembrane channel-like 6 [Homo sapiens] 26 9.2
gi|187608791 transmembrane channel-like 6 [Homo sapiens] 26 9.2
>gi|239756657 PREDICTED: hypothetical protein XP_002344969 [Homo
sapiens]
Length = 138
Score = 271 bits (693), Expect = 1e-73
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MSSSMTASSASASPRLMVEWMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPL 60
MSSSMTASSASASPRLMVEWMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPL
Sbjct: 1 MSSSMTASSASASPRLMVEWMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPL 60
Query: 61 SSERRNSPFFLLLRISESLWATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVL 120
SSERRNSPFFLLLRISESLWATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVL
Sbjct: 61 SSERRNSPFFLLLRISESLWATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVL 120
Query: 121 RGERMTAAMPYGTLCRTP 138
RGERMTAAMPYGTLCRTP
Sbjct: 121 RGERMTAAMPYGTLCRTP 138
>gi|239751140 PREDICTED: hypothetical protein XP_002347723 [Homo
sapiens]
Length = 138
Score = 271 bits (693), Expect = 1e-73
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MSSSMTASSASASPRLMVEWMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPL 60
MSSSMTASSASASPRLMVEWMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPL
Sbjct: 1 MSSSMTASSASASPRLMVEWMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPL 60
Query: 61 SSERRNSPFFLLLRISESLWATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVL 120
SSERRNSPFFLLLRISESLWATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVL
Sbjct: 61 SSERRNSPFFLLLRISESLWATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVL 120
Query: 121 RGERMTAAMPYGTLCRTP 138
RGERMTAAMPYGTLCRTP
Sbjct: 121 RGERMTAAMPYGTLCRTP 138
>gi|239745633 PREDICTED: hypothetical protein XP_002344148 [Homo
sapiens]
Length = 138
Score = 271 bits (693), Expect = 1e-73
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MSSSMTASSASASPRLMVEWMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPL 60
MSSSMTASSASASPRLMVEWMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPL
Sbjct: 1 MSSSMTASSASASPRLMVEWMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPL 60
Query: 61 SSERRNSPFFLLLRISESLWATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVL 120
SSERRNSPFFLLLRISESLWATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVL
Sbjct: 61 SSERRNSPFFLLLRISESLWATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVL 120
Query: 121 RGERMTAAMPYGTLCRTP 138
RGERMTAAMPYGTLCRTP
Sbjct: 121 RGERMTAAMPYGTLCRTP 138
>gi|4506403 G protein-coupled receptor, family C, group 5, member A
[Homo sapiens]
Length = 357
Score = 30.0 bits (66), Expect = 0.63
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 21 MSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPLSSERRNSPFFLLL 73
+SL V L + + SL +++ + ++ + +++ FS LS+ RRN F LLL
Sbjct: 129 LSLLVILGLAVGFSLVQDVIAIEYIVLTMNRTNVNVFSELSAPRRNEDFVLLL 181
>gi|48255947 plasma membrane calcium ATPase 1 isoform 1a [Homo
sapiens]
Length = 1176
Score = 29.3 bits (64), Expect = 1.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 86 PPRDTAGLPATAGEASGCSAVPLVCSLRRELMDV 119
PP GLP G + C+ + L+ L+R+ DV
Sbjct: 530 PPEKEGGLPRHVGNKTECALLGLLLDLKRDYQDV 563
>gi|48255945 plasma membrane calcium ATPase 1 isoform 1b [Homo
sapiens]
Length = 1220
Score = 29.3 bits (64), Expect = 1.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 86 PPRDTAGLPATAGEASGCSAVPLVCSLRRELMDV 119
PP GLP G + C+ + L+ L+R+ DV
Sbjct: 530 PPEKEGGLPRHVGNKTECALLGLLLDLKRDYQDV 563
>gi|190684671 mitogen-activated protein kinase binding protein 1
isoform a [Homo sapiens]
Length = 1508
Score = 29.3 bits (64), Expect = 1.1
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 7 ASSASASPRLMVEWMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPLSSERRN 66
A +A+ PR W+ VEL+V LR+ L LA L D S + + S R
Sbjct: 838 APAANPGPRRRGRWVQPGVELSVRSMLDLRQ----LETLAPSLQDPSQDSLAIIPSGPRK 893
Query: 67 SPFFLLLRISESLWATSTKPPRDTAGLPAT 96
L SL + + KPPR A P +
Sbjct: 894 HGQEAL---ETSLTSQNEKPPRPQASQPCS 920
>gi|190684677 mitogen-activated protein kinase binding protein 1
isoform b [Homo sapiens]
Length = 1514
Score = 29.3 bits (64), Expect = 1.1
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 7 ASSASASPRLMVEWMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPLSSERRN 66
A +A+ PR W+ VEL+V LR+ L LA L D S + + S R
Sbjct: 844 APAANPGPRRRGRWVQPGVELSVRSMLDLRQ----LETLAPSLQDPSQDSLAIIPSGPRK 899
Query: 67 SPFFLLLRISESLWATSTKPPRDTAGLPAT 96
L SL + + KPPR A P +
Sbjct: 900 HGQEAL---ETSLTSQNEKPPRPQASQPCS 926
>gi|155723000 mixed lineage kinase 4 [Homo sapiens]
Length = 1036
Score = 28.9 bits (63), Expect = 1.4
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 45 LARLLLDSDLRSF-------SPLSSERRNSPFFLLLRISESLWATSTKPPRDTAGLPATA 97
LA + L DLR PL E + + R S+S S PP LP+T
Sbjct: 730 LASVALGLDLRELHKAQAAEEPLPKEEKKKREGIFQRASKS--RRSASPP---TSLPSTC 784
Query: 98 GEASGCSAVPLVCSL 112
GEAS ++PL +L
Sbjct: 785 GEASSPPSLPLSSAL 799
>gi|48255955 plasma membrane calcium ATPase 3 isoform 3b [Homo
sapiens]
Length = 1220
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 78 SLWATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDV 119
S + T PP LP G + C+ + V L+R+ V
Sbjct: 520 SAYTTKILPPEKEGALPRQVGNKTECALLGFVLDLKRDFQPV 561
>gi|48255953 plasma membrane calcium ATPase 3 isoform 3a [Homo
sapiens]
Length = 1173
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 78 SLWATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDV 119
S + T PP LP G + C+ + V L+R+ V
Sbjct: 520 SAYTTKILPPEKEGALPRQVGNKTECALLGFVLDLKRDFQPV 561
>gi|122937480 Ras association (RalGDS/AF-6) domain family
(N-terminal) member 10 [Homo sapiens]
Length = 615
Score = 26.6 bits (57), Expect = 7.0
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 2 SSSMTASSASASPR----LMVEWMSLAVELTVLMPASLRKELCLLRWLAR 47
+SS TASS S+SPR VE M V L + ++R+++ L L R
Sbjct: 310 TSSSTASSCSSSPRTHESASVERMETLVHLVLSQDHTIRQQVQRLHELDR 359
>gi|144226234 metastasis suppressor 1 [Homo sapiens]
Length = 755
Score = 26.6 bits (57), Expect = 7.0
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 51 DSDLRSFSPLSSERRNSPFFLLLRISESLWAT-STKPPRDTAGLPATAGEASGCSAVPLV 109
++D + F S+ RNS IS+S K P TAGLP T G A P V
Sbjct: 536 EADQQEFDKSSTIPRNSD------ISQSYRRMFQAKRPASTAGLPTTLGPA---MVTPGV 586
Query: 110 CSLRR 114
++RR
Sbjct: 587 ATIRR 591
>gi|13899309 ribosomal protein S6 kinase-like 1 [Homo sapiens]
Length = 541
Score = 26.2 bits (56), Expect = 9.2
Identities = 16/52 (30%), Positives = 20/52 (38%)
Query: 81 ATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVLRGERMTAAMPYG 132
A ST+P R+ G P SG S +P L G+ A P G
Sbjct: 262 APSTRPQREAEGEPTARTSTSGSSDLPKAPGGHLHLQARRAGQNSDAGPPRG 313
>gi|187608784 transmembrane channel-like 6 [Homo sapiens]
Length = 805
Score = 26.2 bits (56), Expect = 9.2
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 6/112 (5%)
Query: 20 WMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPLSSERRNSPFFLLLRISESL 79
W SL + L P +L +E + LL +L+S + + L L SL
Sbjct: 125 WPSLRLYDLELDPTALEEEE------KQSLLVKELQSLAVAQRDHMLRGMPLSLAEKRSL 178
Query: 80 WATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVLRGERMTAAMPY 131
S P G P + G S C + C L + + + A MP+
Sbjct: 179 REKSRTPRGKWRGQPGSGGVCSCCGRLRYACVLALHSLGLALLSALQALMPW 230
>gi|187608791 transmembrane channel-like 6 [Homo sapiens]
Length = 805
Score = 26.2 bits (56), Expect = 9.2
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 6/112 (5%)
Query: 20 WMSLAVELTVLMPASLRKELCLLRWLARLLLDSDLRSFSPLSSERRNSPFFLLLRISESL 79
W SL + L P +L +E + LL +L+S + + L L SL
Sbjct: 125 WPSLRLYDLELDPTALEEEE------KQSLLVKELQSLAVAQRDHMLRGMPLSLAEKRSL 178
Query: 80 WATSTKPPRDTAGLPATAGEASGCSAVPLVCSLRRELMDVLRGERMTAAMPY 131
S P G P + G S C + C L + + + A MP+
Sbjct: 179 REKSRTPRGKWRGQPGSGGVCSCCGRLRYACVLALHSLGLALLSALQALMPW 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,201,048
Number of Sequences: 37866
Number of extensions: 206413
Number of successful extensions: 550
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 16
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.