Guide to the Human Genome
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Name: LOC100291264 Sequence: fasta or formatted (138aa) NCBI GI: 239751140
Description:

PREDICTED: hypothetical protein XP_002347723

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         14           2
 C cysteine            2.9          4           1
 D aspartate           2.9          4           1
 E glutamate           5.8          8           1
 F phenylalanine       2.2          3           2
 G glycine             3.6          5           1
 H histidine           0.0          0           0
 I isoleucine          0.7          1           1
 K lysine              1.4          2           1
 L leucine            17.4         24           3
 M methionine          5.8          8           1
 N asparagine          0.7          1           1
 P proline             7.2         10           2
 Q glutamine           0.0          0           0
 R arginine           10.1         14           2
 S serine             15.2         21           3
 T threonine           6.5          9           1
 V valine              4.3          6           1
 W tryptophan          2.2          3           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347723 
LOC100291618          1.000   PREDICTED: hypothetical protein XP_002344969 
LOC100288585          1.000   PREDICTED: hypothetical protein XP_002344148 
GPRC5A                0.020   G protein-coupled receptor, family C, group 5, member...
ATP2B1                0.016   plasma membrane calcium ATPase 1 isoform 1a 
ATP2B1                0.016   plasma membrane calcium ATPase 1 isoform 1b 
MAPKBP1               0.016   mitogen-activated protein kinase binding protein 1 ...
MAPKBP1               0.016   mitogen-activated protein kinase binding protein 1 ...
KIAA1804              0.016   mixed lineage kinase 4 
ATP2B3                0.008   plasma membrane calcium ATPase 3 isoform 3b 
ATP2B3                0.008   plasma membrane calcium ATPase 3 isoform 3a 
RASSF10               0.008   Ras association (RalGDS/AF-6) domain family (N-term...
MTSS1                 0.008   metastasis suppressor 1 
RPS6KL1               0.004   ribosomal protein S6 kinase-like 1 
TMC6                  0.004   transmembrane channel-like 6 
TMC6                  0.004   transmembrane channel-like 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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