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Search of human proteins with 239756382
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756382 PREDICTED: similar to KIAA1920 protein [Homo
sapiens]
(483 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756382 PREDICTED: similar to KIAA1920 protein [Homo sapiens] 997 0.0
gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens] 780 0.0
gi|122056683 FRAS1 related extracellular matrix 1 [Homo sapiens] 44 3e-04
gi|108773804 Fraser syndrome 1 [Homo sapiens] 43 7e-04
gi|79749430 FRAS1-related extracellular matrix protein 2 precurs... 41 0.003
gi|169167211 PREDICTED: FRAS1 related extracellular matrix 3 [Ho... 38 0.018
gi|169166904 PREDICTED: FRAS1 related extracellular matrix 3 [Ho... 38 0.018
gi|169166334 PREDICTED: FRAS1 related extracellular matrix 3 [Ho... 38 0.018
gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Hom... 32 1.7
gi|223941846 zinc finger protein 652 [Homo sapiens] 31 2.9
gi|7662384 zinc finger protein 652 [Homo sapiens] 31 2.9
gi|83367077 mucin 16 [Homo sapiens] 30 6.4
>gi|239756382 PREDICTED: similar to KIAA1920 protein [Homo sapiens]
Length = 483
Score = 997 bits (2578), Expect = 0.0
Identities = 483/483 (100%), Positives = 483/483 (100%)
Query: 1 MSWVPRHEKCSPFLDVVNCKACFIHDGPEDTSDQLVLEVSVMAWVPMPSCLWRGQTDLLP 60
MSWVPRHEKCSPFLDVVNCKACFIHDGPEDTSDQLVLEVSVMAWVPMPSCLWRGQTDLLP
Sbjct: 1 MSWVPRHEKCSPFLDVVNCKACFIHDGPEDTSDQLVLEVSVMAWVPMPSCLWRGQTDLLP 60
Query: 61 IQVNPVNDPPHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSGLPV 120
IQVNPVNDPPHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSGLPV
Sbjct: 61 IQVNPVNDPPHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSGLPV 120
Query: 121 EHRDQPGEPVTEFSCWELEAGSLVYVHCGGPTQDLTFRVSNGLQASPPAMLKVVAVQLAI 180
EHRDQPGEPVTEFSCWELEAGSLVYVHCGGPTQDLTFRVSNGLQASPPAMLKVVAVQLAI
Sbjct: 121 EHRDQPGEPVTEFSCWELEAGSLVYVHCGGPTQDLTFRVSNGLQASPPAMLKVVAVQLAI 180
Query: 181 QIHRSTGLHLAQGSAMPILPTNLLVETSAVGQDVTVLLRVTGGLPFRELQKQGAGGVEDA 240
QIHRSTGLHLAQGSAMPILPTNLLVETSAVGQDVTVLLRVTGGLPFRELQKQGAGGVEDA
Sbjct: 181 QIHRSTGLHLAQGSAMPILPTNLLVETSAVGQDVTVLLRVTGGLPFRELQKQGAGGVEDA 240
Query: 241 EWWVTQAFHQQDVDQGHVRYLSTDPQHYTEDTVENLDLQVQVSWEILSNLSFLVTIQRAT 300
EWWVTQAFHQQDVDQGHVRYLSTDPQHYTEDTVENLDLQVQVSWEILSNLSFLVTIQRAT
Sbjct: 241 EWWVTQAFHQQDVDQGHVRYLSTDPQHYTEDTVENLDLQVQVSWEILSNLSFLVTIQRAT 300
Query: 301 VWMLQLEPLHTQNTQQEALTTAHLEATLEEAGPSPPTFHCEVVQAPRKGNFQLQGTMMSD 360
VWMLQLEPLHTQNTQQEALTTAHLEATLEEAGPSPPTFHCEVVQAPRKGNFQLQGTMMSD
Sbjct: 301 VWMLQLEPLHTQNTQQEALTTAHLEATLEEAGPSPPTFHCEVVQAPRKGNFQLQGTMMSD 360
Query: 361 GQGFTQDDVQAAEVTYGAMARASVAVEDTFCFHVTAPPYFSPLCTFSIHIGGDPDMPVLV 420
GQGFTQDDVQAAEVTYGAMARASVAVEDTFCFHVTAPPYFSPLCTFSIHIGGDPDMPVLV
Sbjct: 361 GQGFTQDDVQAAEVTYGAMARASVAVEDTFCFHVTAPPYFSPLCTFSIHIGGDPDMPVLV 420
Query: 421 VPEGGECVLSADQLFIKSLNSARYLYEVMEQPRHGRLTWRGTQDKITMVTSFTNGDLMHG 480
VPEGGECVLSADQLFIKSLNSARYLYEVMEQPRHGRLTWRGTQDKITMVTSFTNGDLMHG
Sbjct: 421 VPEGGECVLSADQLFIKSLNSARYLYEVMEQPRHGRLTWRGTQDKITMVTSFTNGDLMHG 480
Query: 481 QLV 483
QLV
Sbjct: 481 QLV 483
>gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]
Length = 2322
Score = 780 bits (2014), Expect = 0.0
Identities = 398/480 (82%), Positives = 415/480 (86%), Gaps = 5/480 (1%)
Query: 9 KCSPFLDVVNCKACFIHDGPEDTSDQLVLEVSVMAWVPMPSCLWRGQTDLLPIQVNPVND 68
K LDVVN KA FIHDG EDTSDQLVLEVSV A VPMPSCL RGQT LLPIQVNPVND
Sbjct: 492 KMFTLLDVVNRKARFIHDGSEDTSDQLVLEVSVTARVPMPSCLRRGQTYLLPIQVNPVND 551
Query: 69 PPHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSGLPVEHRDQPGE 128
PPHIIFPHGSLMVILEHT KPLGPEV QAYD DS CEGL FQ+LGT SGLPVE RDQPGE
Sbjct: 552 PPHIIFPHGSLMVILEHTQKPLGPEVFQAYDPDSACEGLTFQVLGTSSGLPVERRDQPGE 611
Query: 129 PVTEFSCWELEAGSLVYVHCGGPTQDLTFRVSNGLQASPPAMLKVVAVQLAIQIHRSTGL 188
P TEFSC ELEAGSLVYVH GGP QDLTFRVS+GLQASPPA LKVVA++ AIQIHRSTGL
Sbjct: 612 PATEFSCRELEAGSLVYVHRGGPAQDLTFRVSDGLQASPPATLKVVAIRPAIQIHRSTGL 671
Query: 189 HLAQGSAMPILPTNLLVETSAVGQDVTVLLRVTGGLPFRELQKQGAGGVEDAEWWVTQAF 248
LAQGSAMPILP NL VET+AVGQDV+VL RVTG L F ELQKQGAGGVE AEWW TQAF
Sbjct: 672 RLAQGSAMPILPANLSVETNAVGQDVSVLFRVTGALQFGELQKQGAGGVEGAEWWATQAF 731
Query: 249 HQQDVDQGHVRYLSTDPQHYTEDTVENLDLQVQVSWEILSNLSFLVTIQRATVWMLQLEP 308
HQ+DV+QG VRYLSTDPQH+ DTVENL L+VQV EILSNLSF VTIQRATVWML+LEP
Sbjct: 732 HQRDVEQGRVRYLSTDPQHHAYDTVENLALEVQVGQEILSNLSFPVTIQRATVWMLRLEP 791
Query: 309 LHTQNTQQEALTTAHLEATLEEAGPSPPTFHCEVVQAPRKGNFQLQGTMMSDGQGFTQDD 368
LHTQNTQQE LTTAHLEATLEEAGPSPPTFH EVVQAPRKGN QLQGT +SDGQGFTQDD
Sbjct: 792 LHTQNTQQETLTTAHLEATLEEAGPSPPTFHYEVVQAPRKGNLQLQGTRLSDGQGFTQDD 851
Query: 369 VQAAEVTYGAMARASVAVEDTFCFHVTAPPYFSPLCTFSIHIGGDPDMPV-----LVVPE 423
+QA VTYGA ARAS AVEDTF F VTAPPYFSPL TF IHIGGDPD PV LVVPE
Sbjct: 852 IQAGRVTYGATARASEAVEDTFRFRVTAPPYFSPLYTFPIHIGGDPDAPVLTNVLLVVPE 911
Query: 424 GGECVLSADQLFIKSLNSARYLYEVMEQPRHGRLTWRGTQDKITMVTSFTNGDLMHGQLV 483
GGE VLSAD LF+KSLNSA YLYEVME+PRHGRL WRGTQDK TMVTSFTN DL+ G+LV
Sbjct: 912 GGEGVLSADHLFVKSLNSASYLYEVMERPRHGRLAWRGTQDKTTMVTSFTNEDLLRGRLV 971
Score = 90.1 bits (222), Expect = 4e-18
Identities = 123/490 (25%), Positives = 196/490 (40%), Gaps = 47/490 (9%)
Query: 23 FIHDGPEDTSDQLVLEVSVMAWVPMPSCLWRGQTDLLPIQVNPVNDPPHIIFPHGSLMVI 82
++HDG E +D VL + + + V PVND P I+ + L +
Sbjct: 1432 YVHDGSETLTDSFVLMANASEMDR------QSHPVAFTVTVLPVNDQPPILTTNTGLQM- 1484
Query: 83 LEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSGLPVEHRDQPGEPVTEFSCWELEAGS 142
E P+ E L++ D DS E L + + PS V R PG V F+ +L+ G
Sbjct: 1485 WEGATAPIPAEALRSTDGDSGSEDLVYTI-EQPSNGRVVLRGAPGTEVRSFTQAQLDGGL 1543
Query: 143 LVYVHCGGPTQDLTFRVSNGLQASPPAMLKVVA-VQLAIQIHRSTGLHLAQGSAMPILPT 201
+++ H G FR+S+G SP +V A Q+ + + S L + GS P+
Sbjct: 1544 VLFSHRGTLDGGFRFRLSDGEHTSPGHFFRVTAQKQVLLSLKGSQTLTVCPGSVQPLSSQ 1603
Query: 202 NLLVETSAVGQDVTVLLRVTGGLPFRELQKQGAGGVEDAEWWVTQAFHQQDVDQGHVRY- 260
L +SA +L RV G L +D+ F Q +V G++ Y
Sbjct: 1604 TLRASSSAGTDPQLLLYRVVRGPQLGRL----FHAQQDSTGEALVNFTQAEVYAGNILYE 1659
Query: 261 --LSTDPQHYTEDTVENLDLQVQVSWEILSNLSFLVTIQRAT------VWMLQLEPLHTQ 312
+ +P DT+E L L + ++ + L+ V+ + A +W + + L
Sbjct: 1660 HEMPPEPFWEAHDTLE-LQLSSPPARDVAATLAVAVSFEAACPQRPSHLW--KNKGLWVP 1716
Query: 313 NTQQEALTTAHLEAT-LEEAGPSPPTFH----CEVVQAPRKGNFQLQGTMMSDGQ-GFTQ 366
Q+ +T A L+A+ L + PSP +V Q P +G + + GQ F Q
Sbjct: 1717 EGQRARITVAALDASNLLASVPSPQRSEHDVLFQVTQFPSRGQLLVSEEPLHAGQPHFLQ 1776
Query: 367 DDVQAAEVTYGAMARASVAVEDTFCFHVTAP-------PYFSPLCTFSIH-IGGDPDMPV 418
+ A ++ Y + F H+ P P S ++ + P P
Sbjct: 1777 SQLAAGQLVYAHGGGGTQQDGFHFRAHLQGPAGASVAGPQTSEAFAITVRDVNERPPQPQ 1836
Query: 419 LVVP----EGGECVLSADQLFIKSLNSA--RYLYEVMEQPRHGRLTWRGTQDKITMVTSF 472
VP G +S QL + +SA YEV P +G L+ G + VT F
Sbjct: 1837 ASVPLRLTRGSRAPISRAQLSVVDPDSAPGEIEYEVQRAPHNGFLSLVG--GGLGPVTRF 1894
Query: 473 TNGDLMHGQL 482
T D+ G+L
Sbjct: 1895 TQADVDSGRL 1904
Score = 64.7 bits (156), Expect = 2e-10
Identities = 108/465 (23%), Positives = 178/465 (38%), Gaps = 44/465 (9%)
Query: 15 DVVNCKACFIHDGPEDTSDQLVLEVSVMAWVPMPSCLWRGQTDLLPIQVNPVNDPPHIIF 74
D++ + + HD E T D + V+ W + + + PVND
Sbjct: 964 DLLRGRLVYQHDDSETTEDDIPF-VATRQGESSGDMAWEEVRGVFRVAIQPVND------ 1016
Query: 75 PHGSLMVILEHTHKPLGPEVLQAYD---LDSTCEGLA-FQLLGTPSGL---PVEHRDQPG 127
H + I H G L D G A QL+ T L + D+P
Sbjct: 1017 -HAPVQTISRIFHVARGGRRLLTTDDVAFSDADSGFADAQLVLTRKDLLFGSIVAVDEPT 1075
Query: 128 EPVTEFSCWELEAGSLVYVHCGGPTQDLTFRVSNGLQASPPAMLKVVAVQLAIQIHRSTG 187
P+ F+ +L +++VH G + +VS+G Q A+L+V A + +++ +
Sbjct: 1076 RPIYRFTQEDLRKRRVLFVHSGADRGWIQLQVSDG-QHQATALLEVQASEPYLRVANGSS 1134
Query: 188 LHLAQGSAMPILPTNLLVETSA-VGQDVTVLLRVTGGLPFRELQKQGAGGVEDAEWWVTQ 246
L + QG I L ++T+ + V VT G + +L + G
Sbjct: 1135 LVVPQGGQGTIDTAVLHLDTNLDIRSGDEVHYHVTAGPRWGQLVRAGQPAT--------- 1185
Query: 247 AFHQQDVDQGHVRYL---STDPQHYTEDTVE----NLDLQVQVSWEILSNLSFLVTIQRA 299
AF QQD+ G V Y S P+ +VE + D +QV+ + L+ L ++
Sbjct: 1186 AFSQQDLLDGAVLYSHNGSLSPRDTMAFSVEAGPVHTDATLQVTIALEGPLAPLKLVRHK 1245
Query: 300 TVWMLQLEPLHTQNTQQEALTTAHLEATLEEAGPSPPTFHCEVVQAPRKGNFQLQGTMMS 359
+++ Q E + Q EA A A + + SPP+ V+ + +G + +
Sbjct: 1246 KIYVFQGEAAEIRRDQLEAAQEAVPPADIVFSVKSPPSAGYLVMVS--RGALADEPPSLD 1303
Query: 360 DGQGFTQDDVQAAEVTYGAMARASVAVEDTFCFHVTA---PPYFSPLCTFSIHIGGDP-D 415
Q F+Q+ V V Y + A D F V + P L + P +
Sbjct: 1304 PVQSFSQEAVDTGRVLY--LHSRPEAWSDAFSLDVASGLGAPLEGVLVELEVLPAAIPLE 1361
Query: 416 MPVLVVPEGGECVLSADQLFIKSLNSARYL---YEVMEQPRHGRL 457
VPEGG L+ L + L +V+E P+HG L
Sbjct: 1362 AQNFSVPEGGSLTLAPPLLRVSGPYFPTLLGLSLQVLEPPQHGAL 1406
Score = 38.1 bits (87), Expect = 0.018
Identities = 92/402 (22%), Positives = 142/402 (35%), Gaps = 55/402 (13%)
Query: 109 FQLLGTPSGLPVEHRDQP---GEPVTEFSCWELEAGSLVYVHCGGPTQDLTFRVSNGLQA 165
FQ+ PS + ++P G+P F +L AG LVY H GG TQ F LQ
Sbjct: 1749 FQVTQFPSRGQLLVSEEPLHAGQP--HFLQSQLAAGQLVYAHGGGGTQQDGFHFRAHLQG 1806
Query: 166 SPPAMLKVVAVQLAI--------------QIHRSTGLHLAQGSAMPILPTNL-LVETSAV 210
PA V Q + Q S L L +GS PI L +V+ +
Sbjct: 1807 --PAGASVAGPQTSEAFAITVRDVNERPPQPQASVPLRLTRGSRAPISRAQLSVVDPDSA 1864
Query: 211 GQDVTVLLRVTGGLPFRELQKQGAGGVEDAEWWVTQAFHQQDVDQGHVRYLSTDPQHYTE 270
++ ++ F L G G V F Q DVD G + +++
Sbjct: 1865 PGEIEYEVQRAPHNGFLSLVGGGLGPVT--------RFTQADVDSGRLAFVANG-----S 1911
Query: 271 DTVENLDLQVQVSWEILSNLSFLVTIQRATVWMLQLEPLHT-QNTQQEALTTAHLEATLE 329
L + +S V I + + + PL Q + +L+ L +
Sbjct: 1912 SVAGIFQLSMSDGASPPLPMSLAVDILPSAIEVQLRAPLEVPQALGRSSLSQQQLRVVSD 1971
Query: 330 EAGPSPPTFHCEVVQAPRKGNFQLQGTMMSDGQGFTQDDVQAAEVTYGAMARASVAVEDT 389
P ++Q P+ G+ + G S F+Q + EV + +S D
Sbjct: 1972 REEPEAAY---RLIQGPQYGHLLVGGRPTS---AFSQFQIDQGEVVFAFTNFSSS--HDH 2023
Query: 390 F-----CFHVTAPPYFSPLCTFSIHIGGDPDMPVLVVPEGGECVLSADQLFIKSLNSARY 444
F V A + +H+ P VL A +L ++ + R+
Sbjct: 2024 FRVLALARGVNASAVVNVTVRALLHVWAGGPWPQGATLRLDPTVLDAGELANRTGSVPRF 2083
Query: 445 LYEVMEQPRHGRLT----WRGTQDKITMVTSFTNGDLMHGQL 482
++E PRHGR+ R +V FT DL G+L
Sbjct: 2084 --RLLEGPRHGRVVRVPRARTEPGGSQLVEQFTQQDLEDGRL 2123
Score = 33.5 bits (75), Expect = 0.44
Identities = 77/375 (20%), Positives = 139/375 (37%), Gaps = 39/375 (10%)
Query: 128 EPVTEFSCWELEAGSLVYVHCGGPTQDLTFR--VSNGLQASPPAMLKVVAVQLAIQIHRS 185
+PV FS ++ G ++Y+H F V++GL A +L + V A +
Sbjct: 1303 DPVQSFSQEAVDTGRVLYLHSRPEAWSDAFSLDVASGLGAPLEGVLVELEVLPAAIPLEA 1362
Query: 186 TGLHLAQGSAMPILPTNLLVETSAVGQDVTVLLRVTGGLPFRELQKQGAGGVEDAEWWVT 245
+ +G ++ + P L V G LL ++ L E + GA ED T
Sbjct: 1363 QNFSVPEGGSLTLAPPLLRVS----GPYFPTLLGLS--LQVLEPPQHGALQKEDGPQART 1416
Query: 246 -QAFHQQDVDQGHVRYLSTDPQHYTEDTVENLDLQVQVSWEILSNLSFLVTIQRATVWML 304
AF + V++ +RY+ + T+ V + + + S V + +
Sbjct: 1417 LSAFSWRMVEEQLIRYVHDGSETLTDSFV------LMANASEMDRQSHPVAFTVTVLPVN 1470
Query: 305 QLEPLHTQNTQQE----ALTTAHLEATLEEAGPSPPTFHCEVVQAPRKGNFQLQGTMMSD 360
P+ T NT + A EA G S ++ P G L+G ++
Sbjct: 1471 DQPPILTTNTGLQMWEGATAPIPAEALRSTDGDSGSEDLVYTIEQPSNGRVVLRGAPGTE 1530
Query: 361 GQGFTQDDVQAAEVTYGAMARASVAVEDTFCFHVTAPPYFSPLCTFSIHIGGDPDMPVLV 420
+ FTQ + V + ++ F F ++ + SP F + VL+
Sbjct: 1531 VRSFTQAQLDGGLVLFSHRG----TLDGGFRFRLSDGEHTSPGHFFRV----TAQKQVLL 1582
Query: 421 VPEGGE----CVLSADQLFIKSLNSAR--------YLYEVMEQPRHGRLTWRGTQDKITM 468
+G + C S L ++L ++ LY V+ P+ GRL
Sbjct: 1583 SLKGSQTLTVCPGSVQPLSSQTLRASSSAGTDPQLLLYRVVRGPQLGRLFHAQQDSTGEA 1642
Query: 469 VTSFTNGDLMHGQLV 483
+ +FT ++ G ++
Sbjct: 1643 LVNFTQAEVYAGNIL 1657
>gi|122056683 FRAS1 related extracellular matrix 1 [Homo sapiens]
Length = 2179
Score = 43.9 bits (102), Expect = 3e-04
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 95 LQAYDLDSTCEGLAFQLLGTPSGLPVEHRDQPGEPVTEFSCWELEAGSLVYVHCGGPT-- 152
L A D E L + + P +E+ PG P+T FS ++ ++ YVH T
Sbjct: 1417 LLAVDGTDKPEELLYVITSPPRYGQIEYVHYPGVPITNFSQMDVVGQTVCYVHKSKVTVS 1476
Query: 153 -QDLTFRVSNGLQASPPAM---LKVVAVQLAIQIHRSTGLHLAQGSAMPILPTNL-LVET 207
F +SNGL+ L+ V L + + R+ GL LAQG+ + P L L +
Sbjct: 1477 SDRFRFIISNGLRTEHGVFEITLETVDRALPV-VTRNKGLRLAQGAVGLLSPDLLQLTDP 1535
Query: 208 SAVGQDVTVLLRVTGGLP-FRELQKQGAGGVEDAEWWVTQAFHQQDVDQGHVRY 260
+++T LL LP +L G G ++ F QQDVD +V Y
Sbjct: 1536 DTPAENLTFLL---VQLPQHGQLYLWGTGLLQ-------HNFTQQDVDSKNVAY 1579
Score = 40.0 bits (92), Expect = 0.005
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 20/161 (12%)
Query: 308 PLHTQNTQQEALTTAHLEATLEEAGPSPPTFHCEVVQAPRKGNFQLQGTMMSDGQGFTQD 367
PL Q ++T H+ + +A + + P G +L G ++ G F+
Sbjct: 784 PLKVTEGGQSIISTEHI--LISDADTKLDNIDLSLRELPLHGRVELNGFPLNSGGTFSWG 841
Query: 368 DVQAAEVTYGAMARASVAVEDTFCFHVTAPPYFSPLCTFSIHIGGDPD-----------M 416
D+ +V Y + ++D VT + F +H+ P M
Sbjct: 842 DLHTLKVRY--QHDGTEVLQDDLLLEVTDG---TNSAEFVLHVEVFPVNDEPPVLKADLM 896
Query: 417 PVLVVPEGGECVLSADQLFIKSLNS--ARYLYEVMEQPRHG 455
PV+ EGGE V++++ +F ++S + ++ + +P+HG
Sbjct: 897 PVMNCSEGGEVVITSEYIFATDVDSDNLKLMFVIAREPQHG 937
Score = 37.4 bits (85), Expect = 0.031
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 24/162 (14%)
Query: 15 DVVNCKACFIHDGPEDTSDQLVLEVSVMAWVPMPSCLWRGQTDLLPIQVNPVNDPPHIIF 74
D+ K + HDG E D L+LEV+ +L ++V PVND P ++
Sbjct: 842 DLHTLKVRYQHDGTEVLQDDLLLEVTDGT---------NSAEFVLHVEVFPVNDEPPVL- 891
Query: 75 PHGSLMVIL---EHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSGLPVEHRDQPGEPVT 131
LM ++ E + E + A D+DS L F + P V + G V
Sbjct: 892 -KADLMPVMNCSEGGEVVITSEYIFATDVDSDNLKLMFVIAREPQHGVVR---RAGVTVD 947
Query: 132 EFSCWELEAGSLVYVHCGG-----PTQD-LTFRVSNGLQASP 167
+FS ++ + ++ Y H GG P D +T VS+G +A P
Sbjct: 948 QFSQRDVISEAVTYKHTGGEIGLMPCFDTITLVVSDG-EAGP 988
Score = 36.6 bits (83), Expect = 0.052
Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 25/203 (12%)
Query: 90 LGPEVLQAYDLDSTCEGLAFQLLGTPSGLPVEHRDQPGEPVTEFSCWELEAGSLVYVHCG 149
L P++LQ D D+ E L F L+ P + + G F+ ++++ ++ Y H G
Sbjct: 1525 LSPDLLQLTDPDTPAENLTFLLVQLPQHGQL-YLWGTGLLQHNFTQQDVDSKNVAYRHSG 1583
Query: 150 GPTQDLTFR-----------VSNGLQASPPAMLKVVAVQLAIQIHRSTGLH-------LA 191
G +Q F + NG P + + QL R T LH L
Sbjct: 1584 GDSQTDCFTFMATDGTNQGFIVNGRVWEEPVLFTIQVDQLDKTAPRITLLHSPSQVGLLK 1643
Query: 192 QGSAMPILPTNLLVETSAVGQDVTVLLRVTGGLPFRELQKQGAGGVEDAEWWVTQAFHQQ 251
G + + +L + +D ++ ++ G L+ G ++ + F Q+
Sbjct: 1644 NGCYGIYITSRVLKASDPDTEDDQIIFKILQGPKHGHLENTTTGE------FIHEKFSQK 1697
Query: 252 DVDQGHVRYLSTDPQHYTEDTVE 274
D++ + Y+ DTVE
Sbjct: 1698 DLNSKTILYIINPSLEVNSDTVE 1720
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 42.7 bits (99), Expect = 7e-04
Identities = 89/416 (21%), Positives = 159/416 (38%), Gaps = 39/416 (9%)
Query: 95 LQAYDLDSTCEGLAFQLLGTPSGLPVEHRDQPGEPV---------TEFSCWELEAGSLVY 145
L DLD+ L F L P V R EP+ + F+ ++ AG + Y
Sbjct: 1980 LSLQDLDTPDNELIFVLTKKPDHGHVLWRQTASEPLENGRVLVQGSTFTYQDILAGLVGY 2039
Query: 146 VHC--GGPTQDLTFRVSNGLQASPPAMLKVVAVQLAIQIHRST--GLHLAQGSAMPILPT 201
V G + F +++GL M + + H + GL L+ GS I
Sbjct: 2040 VPSVPGMVVDEFQFSLTDGLHVDTGRMKIYTELPASDTPHLAINQGLQLSAGSVARITEQ 2099
Query: 202 NLLVETSAVGQDVTVLLRVTGGLPFRELQKQGAGGVEDAEW-WVTQAFHQQDVDQGHVRY 260
+L V T D V+ + LQ G +E ++F Q D+ QG Y
Sbjct: 2100 HLKV-TDIDSDDHQVMYIMKEDPGAGRLQMMKHGNLEQISIKGPIRSFTQADISQGQPEY 2158
Query: 261 LSTDPQHYTEDTVENLDLQVQV---SWEILSNLSFLVTI--QRATVWMLQLEPLHTQNTQ 315
H T + + + V L + SF ++I ++ + + L
Sbjct: 2159 -----SHGTGEPGGSFAFKFDVVDGEGNRLIDKSFSISILEDKSPPVITTNKGLVLDENS 2213
Query: 316 QEALTTAHLEATLEEAGPSPPTFHCEVVQAPRKGNFQLQGTMMSDGQGFTQDDVQAAEVT 375
+ +TT L AT +++GP+ + + + P+ G+ + + FTQ D+ + V
Sbjct: 2214 VKKITTLQLSATDQDSGPTELIYR--ITRQPQLGHLEHAASPGIQISSFTQADLTSRNVQ 2271
Query: 376 YGAMARASVAVEDTFCFHVTAPPYFSPLC-TFSIHIGG-DPDMPVLV-----VPEGGECV 428
Y +S A + + F T S + TF I + D +PV+ V EG
Sbjct: 2272 Y---VHSSEAEKHSDAFSFTLSDGVSEVTQTFHITLHPVDDSLPVVQNLGMRVQEGMRKT 2328
Query: 429 LSADQLFIKSLNSAR--YLYEVMEQPRHGRLTWRGTQDKITMVTSFTNGDLMHGQL 482
++ +L ++ + +++ PRHG + + ++FT D+ ++
Sbjct: 2329 ITEFELKAVDADTEAESVTFTIVQPPRHGTIERTSNGQHFHLTSTFTMKDIYQNRV 2384
Score = 35.8 bits (81), Expect = 0.089
Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 21/201 (10%)
Query: 69 PPHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSGLPVEHRDQPGE 128
PP I G +V+ E++ K + L A D DS L +++ P +EH PG
Sbjct: 2198 PPVITTNKG--LVLDENSVKKITTLQLSATDQDSGPTELIYRITRQPQLGHLEHAASPGI 2255
Query: 129 PVTEFSCWELEAGSLVYVHCGGP---TQDLTFRVSNGL-QASPPAMLKVVAVQLAIQIHR 184
++ F+ +L + ++ YVH + +F +S+G+ + + + + V ++ + +
Sbjct: 2256 QISSFTQADLTSRNVQYVHSSEAEKHSDAFSFTLSDGVSEVTQTFHITLHPVDDSLPVVQ 2315
Query: 185 STGLHLAQGSAMPILPTNL-LVETSAVGQDVTVLLRVTGGLPFRELQKQGAGGVE----D 239
+ G+ + +G I L V+ + VT F +Q G +E
Sbjct: 2316 NLGMRVQEGMRKTITEFELKAVDADTEAESVT----------FTIVQPPRHGTIERTSNG 2365
Query: 240 AEWWVTQAFHQQDVDQGHVRY 260
+ +T F +D+ Q V Y
Sbjct: 2366 QHFHLTSTFTMKDIYQNRVSY 2386
Score = 35.4 bits (80), Expect = 0.12
Identities = 76/399 (19%), Positives = 145/399 (36%), Gaps = 62/399 (15%)
Query: 23 FIHDGPEDTSDQLVLEVSVMAWVPMPSCLWRGQTDLLPIQVNPVNDP-------PHIIFP 75
+ HDG + TSD VL+ + L ++ P ND + P
Sbjct: 1290 YAHDGSDSTSDVAVLQANDGHSF---------HNILFQVKTVPQNDRGLQLVANSMVWVP 1340
Query: 76 HGSLMVILEHTHKPLGP-----EVLQAYDLDSTCEGLAFQLLGTPSGLPVEHRD-----Q 125
G ++ I + P E++ D G L+ P+ P + +
Sbjct: 1341 EGGMLQITNRILQAEAPGASAEEIIYKITQDYPQFGEVVLLVNMPADSPADEGQHLPDGR 1400
Query: 126 PGEPVTEFSCWELEAGSLVYVHCGGPTQDLTFRVSNGLQASPPAMLKVVAVQLAI----- 180
P + F+ ++ G + Y H G P Q +FR ++ L+ +AI
Sbjct: 1401 TATPTSTFTQQDINEGIVWYRHSGAPAQSDSFRFEVSSASNAQTRLESHMFNIAILPQTP 1460
Query: 181 ---QIHRSTGLHL-AQGSAMPILPTNLLVETSAVGQDVTVLLRVTGGLPFRELQKQGAGG 236
++ LH+ A+ + ++ + L ++ ++ +T LP QG
Sbjct: 1461 EAPKVSLEASLHMTAREDGLTVIQPHSLSFINSEKPSGKIVYNIT--LPLH--PNQGIIE 1516
Query: 237 VEDAEWWVTQAFHQQDVDQGHVRYLSTDPQHYTEDTV--------ENLDLQVQV------ 282
D + F Q+D++QG V Y + ++ + E++ V
Sbjct: 1517 HRDHPHSPIRYFTQEDINQGKVMYRPPPAAPHLQELMAFSFAGLPESVKFHFTVSDGEHT 1576
Query: 283 SWEILSNLSFLVTIQRATVWMLQLEPLHTQNTQQEALTTAHLEATLEEAGPSPPTFHCEV 342
S E++ + L + Q+ V+ + L T+ L+ + +A +P E+
Sbjct: 1577 SPEMVLTIHLLPSDQQLPVFQVTAPRL---AVSPGGSTSVGLQVVVRDAETAPKELFFEL 1633
Query: 343 VQAPRKGNFQLQGTM-----MSDGQGFTQDDVQAAEVTY 376
+ P+ G L+ T M+ G FT +DV+ + Y
Sbjct: 1634 RRPPQHG-VLLKHTAEFRRPMATGDTFTYEDVEKNALQY 1671
Score = 30.4 bits (67), Expect = 3.7
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 72 IIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSG----LPVEHRDQPG 127
+I P GS+ KPL +L D + E L F ++ TP+ L ++
Sbjct: 1110 LILPIGSI--------KPLDFSLLNVQDQEGRVEDLLFHVVSTPTNGQLVLSRNGKEVQL 1161
Query: 128 EPVTEFSCWELEAGSLVYVHCGGPTQD--LTFRVSNGLQASPPAMLKVVAVQL-AIQIHR 184
+ FS ++ + +VH + L ++S+ S P ++ + A A + R
Sbjct: 1162 DKAGRFSWKDVNEKKVRFVHSKEKLRKGYLFLKISDQQFFSEPQLINIQAFSTQAPYVLR 1221
Query: 185 STGLHLAQGSAMPILPTNLLVETSAVGQDVTV 216
+ LH+++G I L + QDV +
Sbjct: 1222 NEVLHISRGERATITTQMLDIRDDDNPQDVVI 1253
>gi|79749430 FRAS1-related extracellular matrix protein 2 precursor
[Homo sapiens]
Length = 3169
Score = 40.8 bits (94), Expect = 0.003
Identities = 99/429 (23%), Positives = 161/429 (37%), Gaps = 90/429 (20%)
Query: 58 LLPIQVNPVNDPPHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLG---T 114
L PI + PV+D P ++ + L + E P+ P L A D+DS L F L T
Sbjct: 548 LFPITLVPVDDQPPVLNANTGL-TLAEGETVPILPLSLSATDMDSDDSLLLFVLESPFLT 606
Query: 115 PSGLPVEHRDQPGEP------------------VTEFSCWELEAGSLVYVHCG----GPT 152
L + P E VTE+ ++ G L Y H G GP
Sbjct: 607 TGHLLLRQTHPPHEKQELLRGLWRKEGAFYERTVTEWQQQDITEGRLFYRHSGPHSPGPV 666
Query: 153 QD-LTFRVSNGLQASPPAMLKVVAVQLAIQIHRSTGLHLAQGSAMPILPTNLLVETSAVG 211
D TFRV + + L+ + I+IH L GS P+ ++V+ S +
Sbjct: 667 TDQFTFRVQDNHDPPNQSGLQ----RFVIRIHPVDRLPPELGSGCPL---RMVVQESQLT 719
Query: 212 QDVTVLLRVTGGLPFRELQKQGAGGVEDAEWWVTQAFHQQDVDQGHVR------YLSTDP 265
LR T +L +D E T D D+ H+ L+ +P
Sbjct: 720 PLRKKWLRYT------DLD------TDDRELRYTVTQSPTDTDENHLPAPLGTLVLTDNP 767
Query: 266 Q----HYTEDTVENLDLQVQVSWEIL------SNLSFLVTIQRATV----WMLQLEPLHT 311
H+T+ + + + + + L + F V + V + L L P+
Sbjct: 768 SVVVTHFTQAQINHHKIAYRPPGQELGVATRVAQFQFQVEDRAGNVAPGTFTLYLHPV-- 825
Query: 312 QNTQQEALTTAHLEATLEEAGP---SPPTFHCEVV------------QAPRKGNFQLQGT 356
N E L T T++E G S H V QAP+ G+ ++ G
Sbjct: 826 DNQPPEILNTGF---TIQEKGHHILSETELHVNDVDTDVAHISFTLTQAPKHGHMRVSGQ 882
Query: 357 MMSDGQGFTQDDVQAAEVTYGAMARASVAVEDTFCFHVTAPPYFSPLCTFSIHIGG-DPD 415
++ G F +D++ V+Y S+ D+ V+ + P+ T +++ D +
Sbjct: 883 ILHVGGLFHLEDIKQGRVSYAHNGDKSLT--DSCSLEVSDRHHVVPI-TLRVNVRPVDDE 939
Query: 416 MPVLVVPEG 424
+P+L P G
Sbjct: 940 VPILSHPTG 948
Score = 38.9 bits (89), Expect = 0.011
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 30/174 (17%)
Query: 133 FSCWELEAGSLVYVHC---GGPTQDLTFRVSNG-----LQASPPAMLKVVAVQLAIQIHR 184
F+ EL AG +VY H G + +L R+ +G +Q P L V Q + ++
Sbjct: 507 FTVAELAAGQVVYQHDDRDGSLSDNLVLRMVDGGGRHQVQFLFPITLVPVDDQPPV-LNA 565
Query: 185 STGLHLAQGSAMPILPTNLLVETSAVGQDVTVLLRV-------TGGLPFREL----QKQ- 232
+TGL LA+G +PILP +L + + D ++LL V TG L R+ +KQ
Sbjct: 566 NTGLTLAEGETVPILPLSL--SATDMDSDDSLLLFVLESPFLTTGHLLLRQTHPPHEKQE 623
Query: 233 ---GAGGVEDA--EWWVTQAFHQQDVDQGHVRYLSTDPQHYTEDTVENLDLQVQ 281
G E A E VT+ + QQD+ +G + Y + P H + +VQ
Sbjct: 624 LLRGLWRKEGAFYERTVTE-WQQQDITEGRLFYRHSGP-HSPGPVTDQFTFRVQ 675
Score = 37.4 bits (85), Expect = 0.031
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 90 LGPEVLQAYDLDSTCEGLAFQLLGTPSGLPVEHRDQPGEPVTEFSCWELEAGSLVYVH 147
L ++L DL+S E L F + P +E DQPG +T F+ +L + Y+H
Sbjct: 1439 LTTDLLSTSDLNSPDENLVFTITRAPMRGHLECTDQPGVSITSFTQLQLAGNKIYYIH 1496
Score = 34.7 bits (78), Expect = 0.20
Identities = 60/273 (21%), Positives = 108/273 (39%), Gaps = 39/273 (14%)
Query: 15 DVVNCKACFIHDGPEDTSDQLVLEVSVMAWVPMPSCLWRGQTDLLPIQVNPVNDP-PHII 73
D+ + + H+G + +D LEVS V + L + V PV+D P +
Sbjct: 894 DIKQGRVSYAHNGDKSLTDSCSLEVSDRHHVVPIT---------LRVNVRPVDDEVPILS 944
Query: 74 FPHGSL---MVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSGLPVEHRDQPGEPV 130
P G+L + +LE+ + V++ + ++ L F L P + P E
Sbjct: 945 HPTGTLESYLDVLENGATEITANVIKGTNEETDDLMLTFLLEDPPLYGEILVNGIPAEQF 1004
Query: 131 TEFSCWELEAGSLVYVHCGG-----PTQDLTFRVS------------NGLQASPPAMLKV 173
T+ E GS+VY H G P D +F +S N +Q + +
Sbjct: 1005 TQRDILE---GSVVYTHTSGEIGLLPKAD-SFNLSLSDMSQEWRIGGNTIQGVTIWVTIL 1060
Query: 174 VAVQLAIQIHRSTGLHLAQGSAMPILPTNLLVE-TSAVGQDV--TVLLRVTGGLPFRELQ 230
A +I L + +G I ++ E ++ D+ T++++ T G + E
Sbjct: 1061 PVDSQAPEIFVGEQLIVMEGDKSVITSVHISAEDVDSLNDDILCTIVIQPTSG--YVENI 1118
Query: 231 KQGAGGVEDAEWWVTQAFHQQDVDQGHVRYLST 263
G + AF+ +D+ QGH+ Y+ +
Sbjct: 1119 SPAPGSEKSRAGIAISAFNLKDLRQGHINYVQS 1151
Score = 30.8 bits (68), Expect = 2.9
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 361 GQGFTQDDVQAAEVTYGAMARASVAVEDTFCFHVTAPPYFSPLCT--FSIHIGG-DPDMP 417
G FTQD+V + Y + + + D F VT +PL F + IG D P
Sbjct: 1367 GMNFTQDEVDRNLIQYVHLGQEGI--RDLIKFDVTDG--INPLIDRYFYVSIGSIDIVFP 1422
Query: 418 VLV-----VPEGGECVLSADQLFIKSLNS--ARYLYEVMEQPRHGRLTWRGTQDKITMVT 470
++ + EGG+ L+ D L LNS ++ + P G L T +T
Sbjct: 1423 DVISKGVSLKEGGKVTLTTDLLSTSDLNSPDENLVFTITRAPMRGHL--ECTDQPGVSIT 1480
Query: 471 SFT 473
SFT
Sbjct: 1481 SFT 1483
>gi|169167211 PREDICTED: FRAS1 related extracellular matrix 3 [Homo
sapiens]
Length = 2139
Score = 38.1 bits (87), Expect = 0.018
Identities = 79/350 (22%), Positives = 132/350 (37%), Gaps = 32/350 (9%)
Query: 59 LPIQVNPVNDP-PHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQL-LGTPS 116
+PI V V+D PH+ +G L V H+ + + +L+A DLDS + L+F L G
Sbjct: 1295 VPIVVTLVDDETPHLTVNNG-LKVEKGHS-EIITNRILKATDLDSDDKSLSFVLHSGPQQ 1352
Query: 117 GLPVEHRDQPGEPVT------EFSCWELEAGSLVYVHCG--GPTQDLTFRVSNGLQASPP 168
GL R GE F+ E+ G + Y+H G G + F V++G+
Sbjct: 1353 GLLQRLRKPRGEVRNNLTLGMNFTQDEINRGLICYIHTGQEGIVDIIKFDVTDGVNTLTD 1412
Query: 169 AMLKVVAVQLAIQIHR--STGLHLAQGSAMPILPTNLLVETSAVGQDVTVLLRVTGGLPF 226
V L S + L +G+ + + TN L+ S + +T
Sbjct: 1413 HYFYVTIGNLDSVFPEVISKRITLIEGARVTL--TNNLLTNSDINSSDEHHFSITRAPSL 1470
Query: 227 RELQKQGAGGVEDAEWWVTQAFHQQDVDQGHVRYLSTDPQHYTEDTVENLDLQV-QVSWE 285
L+ G A +F Q + + Y+ T E +++ + QV +
Sbjct: 1471 GHLESSDYAGEPIA------SFTQLQLASNKISYVHTSND---EKKMDSFEFQVIGELYP 1521
Query: 286 ILSNLSFLVTIQRATVWMLQLEPLHTQNTQQEALTTAHLEATLEEAGPSPPTFHCEVVQA 345
+ +T +L + L Q + +T LE T+E++ + Q
Sbjct: 1522 VFRTFRIFITDVDNKKPILTIHRLTLQKEDSQLITL--LELTVEDSDTPDDLILFTITQV 1579
Query: 346 PRKGNFQLQGTMMSDGQGFTQDDVQAAEVTYGAMARASVAVEDTFCFHVT 395
P G G+ FT+ D+ ++Y S ED+F VT
Sbjct: 1580 PMHGKILYNGS--RPVTTFTKQDLNKNLISY--KHDGSETTEDSFSLTVT 1625
Score = 35.4 bits (80), Expect = 0.12
Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 23/179 (12%)
Query: 15 DVVNCKACFIHDGPE------DTSDQLVLEVSVMAWVPMPSCLWRGQTDLLPIQVNPVND 68
D++N + + H E + L+L WV S + + Q + + V+ V
Sbjct: 1011 DLINGRVAYAHTAGEVGFQKQHDAFSLILSKDSYQWVVGNSIIEKVQVQVTVLPVDNVG- 1069
Query: 69 PPHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSG--------LPV 120
P ++ G ++ E L + L D+D+ + L + P+ P
Sbjct: 1070 -PKVLV--GESFIVYEGEKNSLTLQHLHVEDVDTHQDELLCTVTSQPASGYLEKIASAPG 1126
Query: 121 EHRDQPGEPVTEFSCWELEAGSLVYV---HCGGPTQD--LTFRVSNGLQASPPAMLKVV 174
Q G P++ FS +++ + YV H G Q+ TF S+G+ SP ++
Sbjct: 1127 SKMSQSGSPISAFSLRDIQVRHINYVQSIHKGVEPQEDQFTFYCSDGINFSPNVFFPII 1185
>gi|169166904 PREDICTED: FRAS1 related extracellular matrix 3 [Homo
sapiens]
Length = 2139
Score = 38.1 bits (87), Expect = 0.018
Identities = 79/350 (22%), Positives = 132/350 (37%), Gaps = 32/350 (9%)
Query: 59 LPIQVNPVNDP-PHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQL-LGTPS 116
+PI V V+D PH+ +G L V H+ + + +L+A DLDS + L+F L G
Sbjct: 1295 VPIVVTLVDDETPHLTVNNG-LKVEKGHS-EIITNRILKATDLDSDDKSLSFVLHSGPQQ 1352
Query: 117 GLPVEHRDQPGEPVT------EFSCWELEAGSLVYVHCG--GPTQDLTFRVSNGLQASPP 168
GL R GE F+ E+ G + Y+H G G + F V++G+
Sbjct: 1353 GLLQRLRKPRGEVRNNLTLGMNFTQDEINRGLICYIHTGQEGIVDIIKFDVTDGVNTLTD 1412
Query: 169 AMLKVVAVQLAIQIHR--STGLHLAQGSAMPILPTNLLVETSAVGQDVTVLLRVTGGLPF 226
V L S + L +G+ + + TN L+ S + +T
Sbjct: 1413 HYFYVTIGNLDSVFPEVISKRITLIEGARVTL--TNNLLTNSDINSSDEHHFSITRAPSL 1470
Query: 227 RELQKQGAGGVEDAEWWVTQAFHQQDVDQGHVRYLSTDPQHYTEDTVENLDLQV-QVSWE 285
L+ G A +F Q + + Y+ T E +++ + QV +
Sbjct: 1471 GHLESSDYAGEPIA------SFTQLQLASNKISYVHTSND---EKKMDSFEFQVIGELYP 1521
Query: 286 ILSNLSFLVTIQRATVWMLQLEPLHTQNTQQEALTTAHLEATLEEAGPSPPTFHCEVVQA 345
+ +T +L + L Q + +T LE T+E++ + Q
Sbjct: 1522 VFRTFRIFITDVDNKKPILTIHRLTLQKEDSQLITL--LELTVEDSDTPDDLILFTITQV 1579
Query: 346 PRKGNFQLQGTMMSDGQGFTQDDVQAAEVTYGAMARASVAVEDTFCFHVT 395
P G G+ FT+ D+ ++Y S ED+F VT
Sbjct: 1580 PMHGKILYNGS--RPVTTFTKQDLNKNLISY--KHDGSETTEDSFSLTVT 1625
Score = 35.4 bits (80), Expect = 0.12
Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 23/179 (12%)
Query: 15 DVVNCKACFIHDGPE------DTSDQLVLEVSVMAWVPMPSCLWRGQTDLLPIQVNPVND 68
D++N + + H E + L+L WV S + + Q + + V+ V
Sbjct: 1011 DLINGRVAYAHTAGEVGFQKQHDAFSLILSKDSYQWVVGNSIIEKVQVQVTVLPVDNVG- 1069
Query: 69 PPHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSG--------LPV 120
P ++ G ++ E L + L D+D+ + L + P+ P
Sbjct: 1070 -PKVLV--GESFIVYEGEKNSLTLQHLHVEDVDTHQDELLCTVTSQPASGYLEKIASAPG 1126
Query: 121 EHRDQPGEPVTEFSCWELEAGSLVYV---HCGGPTQD--LTFRVSNGLQASPPAMLKVV 174
Q G P++ FS +++ + YV H G Q+ TF S+G+ SP ++
Sbjct: 1127 SKMSQSGSPISAFSLRDIQVRHINYVQSIHKGVEPQEDQFTFYCSDGINFSPNVFFPII 1185
>gi|169166334 PREDICTED: FRAS1 related extracellular matrix 3 [Homo
sapiens]
Length = 2139
Score = 38.1 bits (87), Expect = 0.018
Identities = 79/350 (22%), Positives = 132/350 (37%), Gaps = 32/350 (9%)
Query: 59 LPIQVNPVNDP-PHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQL-LGTPS 116
+PI V V+D PH+ +G L V H+ + + +L+A DLDS + L+F L G
Sbjct: 1295 VPIVVTLVDDETPHLTVNNG-LKVEKGHS-EIITNRILKATDLDSDDKSLSFVLHSGPQQ 1352
Query: 117 GLPVEHRDQPGEPVT------EFSCWELEAGSLVYVHCG--GPTQDLTFRVSNGLQASPP 168
GL R GE F+ E+ G + Y+H G G + F V++G+
Sbjct: 1353 GLLQRLRKPRGEVRNNLTLGMNFTQDEINRGLICYIHTGQEGIVDIIKFDVTDGVNTLTD 1412
Query: 169 AMLKVVAVQLAIQIHR--STGLHLAQGSAMPILPTNLLVETSAVGQDVTVLLRVTGGLPF 226
V L S + L +G+ + + TN L+ S + +T
Sbjct: 1413 HYFYVTIGNLDSVFPEVISKRITLIEGARVTL--TNNLLTNSDINSSDEHHFSITRAPSL 1470
Query: 227 RELQKQGAGGVEDAEWWVTQAFHQQDVDQGHVRYLSTDPQHYTEDTVENLDLQV-QVSWE 285
L+ G A +F Q + + Y+ T E +++ + QV +
Sbjct: 1471 GHLESSDYAGEPIA------SFTQLQLASNKISYVHTSND---EKKMDSFEFQVIGELYP 1521
Query: 286 ILSNLSFLVTIQRATVWMLQLEPLHTQNTQQEALTTAHLEATLEEAGPSPPTFHCEVVQA 345
+ +T +L + L Q + +T LE T+E++ + Q
Sbjct: 1522 VFRTFRIFITDVDNKKPILTIHRLTLQKEDSQLITL--LELTVEDSDTPDDLILFTITQV 1579
Query: 346 PRKGNFQLQGTMMSDGQGFTQDDVQAAEVTYGAMARASVAVEDTFCFHVT 395
P G G+ FT+ D+ ++Y S ED+F VT
Sbjct: 1580 PMHGKILYNGS--RPVTTFTKQDLNKNLISY--KHDGSETTEDSFSLTVT 1625
Score = 35.0 bits (79), Expect = 0.15
Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 23/179 (12%)
Query: 15 DVVNCKACFIHDGPE------DTSDQLVLEVSVMAWVPMPSCLWRGQTDLLPIQVNPVND 68
D++N + + H E + L+L WV S + + Q + + V+ V
Sbjct: 1011 DLINGRVAYAHTAGEVGFQKQHDAFSLILSKDSYQWVVGNSIIEKVQVQVTVLPVDNVGP 1070
Query: 69 PPHIIFPHGSLMVILEHTHKPLGPEVLQAYDLDSTCEGLAFQLLGTPSG--------LPV 120
+ G ++ E L + L D+D+ + L + P+ P
Sbjct: 1071 KVFV----GESFIVYEGEKNSLTLQHLHVEDVDTHQDELLCTVTSQPASGYLEKIASAPG 1126
Query: 121 EHRDQPGEPVTEFSCWELEAGSLVYV---HCGGPTQD--LTFRVSNGLQASPPAMLKVV 174
Q G P++ FS +++ + YV H G Q+ TF S+G+ SP ++
Sbjct: 1127 SKMSQSGSPISAFSLRDIQVRHINYVQSIHKGVEPQEDQFTFYCSDGINFSPNVFFPII 1185
>gi|14042978 BRCA1 interacting protein C-terminal helicase 1 [Homo
sapiens]
Length = 1249
Score = 31.6 bits (70), Expect = 1.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 6 RHEKCSPFLDVVNCKACFIHDGPEDTSDQLVLE 38
R+EKC LD N K+C+ + G SDQ L+
Sbjct: 294 RNEKCMELLDGKNGKSCYFYHGVHKISDQHTLQ 326
>gi|223941846 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 30.8 bits (68), Expect = 2.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 22 CFIHDGPEDTSDQLVLEVSVMAWVPMPSCLWRGQTDLLPIQVNPVNDPPHIIFPHG-SLM 80
CF P + + + ++ P+PS + T PI +NPV+ P PH S +
Sbjct: 491 CFRVTSPVNVPPAVQIPLTTSPATPVPSVVNTATTPTPPINMNPVSTLPPRPIPHPFSHL 550
Query: 81 VILEHTHKP 89
I H H P
Sbjct: 551 HIHPHPHHP 559
>gi|7662384 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 30.8 bits (68), Expect = 2.9
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 22 CFIHDGPEDTSDQLVLEVSVMAWVPMPSCLWRGQTDLLPIQVNPVNDPPHIIFPHG-SLM 80
CF P + + + ++ P+PS + T PI +NPV+ P PH S +
Sbjct: 491 CFRVTSPVNVPPAVQIPLTTSPATPVPSVVNTATTPTPPINMNPVSTLPPRPIPHPFSHL 550
Query: 81 VILEHTHKP 89
I H H P
Sbjct: 551 HIHPHPHHP 559
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 29.6 bits (65), Expect = 6.4
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 218 LRVTGGLPFRELQKQGAGGVED-----------AEWWVTQAFHQQDVDQGHVRYLSTDPQ 266
LR TG R+ A G D A W +++ QQ + H +++ T P
Sbjct: 483 LRTTGSTSGRQSSSTAAHGSSDILRATTSSTSKASSWTSESTAQQFSEPQHTQWVETSPS 542
Query: 267 HYTEDTVENLDLQVQVSWEILSNLSFLVTIQRATVWMLQLE 307
TE + + ++ + S +S T++ ++ + LE
Sbjct: 543 MKTERPPASTSVAAPITTSVPSVVSGFTTLKTSSTKGIWLE 583
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,825,543
Number of Sequences: 37866
Number of extensions: 990841
Number of successful extensions: 2006
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1955
Number of HSP's gapped (non-prelim): 44
length of query: 483
length of database: 18,247,518
effective HSP length: 106
effective length of query: 377
effective length of database: 14,233,722
effective search space: 5366113194
effective search space used: 5366113194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.