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Search of human proteins with 239756338
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756338 PREDICTED: hypothetical protein XP_002344884 [Homo
sapiens]
(339 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756338 PREDICTED: hypothetical protein XP_002344884 [Homo ... 686 0.0
gi|239745187 PREDICTED: hypothetical protein XP_002343385 [Homo ... 686 0.0
gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo ... 34 0.16
gi|239748288 PREDICTED: hypothetical protein [Homo sapiens] 34 0.16
gi|239742188 PREDICTED: hypothetical protein XP_002342448 [Homo ... 34 0.16
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 32 0.81
gi|239756135 PREDICTED: similar to AGAP002076-PA [Homo sapiens] 31 1.8
gi|239750666 PREDICTED: hypothetical protein XP_002347503 [Homo ... 31 1.8
gi|239744976 PREDICTED: hypothetical protein XP_002343322 [Homo ... 31 1.8
gi|149773449 zinc finger protein 862 [Homo sapiens] 30 2.4
gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens] 30 3.1
gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens] 29 5.3
gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens] 29 5.3
gi|6912676 SKI-interacting protein [Homo sapiens] 29 6.9
gi|239748426 PREDICTED: hypothetical protein, partial [Homo sapi... 28 9.0
gi|239742359 PREDICTED: hypothetical protein XP_002342501, parti... 28 9.0
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 28 9.0
>gi|239756338 PREDICTED: hypothetical protein XP_002344884 [Homo
sapiens]
Length = 339
Score = 686 bits (1771), Expect = 0.0
Identities = 339/339 (100%), Positives = 339/339 (100%)
Query: 1 MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM 60
MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM
Sbjct: 1 MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM 60
Query: 61 CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA 120
CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA
Sbjct: 61 CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA 120
Query: 121 AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD 180
AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD
Sbjct: 121 AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD 180
Query: 181 SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP 240
SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP
Sbjct: 181 SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP 240
Query: 241 IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL 300
IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL
Sbjct: 241 IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL 300
Query: 301 ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST 339
ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST
Sbjct: 301 ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST 339
>gi|239745187 PREDICTED: hypothetical protein XP_002343385 [Homo
sapiens]
Length = 339
Score = 686 bits (1771), Expect = 0.0
Identities = 339/339 (100%), Positives = 339/339 (100%)
Query: 1 MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM 60
MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM
Sbjct: 1 MEVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAPRQDDSHAGGVCDARVM 60
Query: 61 CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA 120
CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA
Sbjct: 61 CGKGVVLGPLQEKPPSDGVEHGHAADVAPVVLNEALELLHRLVETAALELLSAQVPAALA 120
Query: 121 AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD 180
AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD
Sbjct: 121 AWESSSLSWNPDSRNMDSTTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTD 180
Query: 181 SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP 240
SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP
Sbjct: 181 SIAPSSLSHLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASP 240
Query: 241 IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL 300
IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL
Sbjct: 241 IIPSSLTFHEDHQDVQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLGPAQLTAAL 300
Query: 301 ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST 339
ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST
Sbjct: 301 ISSCSRSSHSWMLNPLSFRAPRRFSTSACRSSSKLNSST 339
>gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo
sapiens]
Length = 186
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 250 EDHQD-----VQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLG 292
ED +D V ++ E A+ +VS G+H+HV+ LE GLGKLG
Sbjct: 95 EDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLG 142
>gi|239748288 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 250 EDHQD-----VQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLG 292
ED +D V ++ E A+ +VS G+H+HV+ LE GLGKLG
Sbjct: 38 EDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLG 85
>gi|239742188 PREDICTED: hypothetical protein XP_002342448 [Homo
sapiens]
Length = 129
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 250 EDHQD-----VQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLG 292
ED +D V ++ E A+ +VS G+H+HV+ LE GLGKLG
Sbjct: 38 EDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLG 85
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 32.0 bits (71), Expect = 0.81
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 191 FALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASPIIPSSLTFHE 250
F+ A +P L + P Q L+L + A P+++ PC +SP++PS H
Sbjct: 1708 FSSAPVPPNALSSSPAPNIQTGRPLVLSSRATPVQLPSP-----PCTSSPVVPS----HP 1758
Query: 251 DHQDVQELSEGQVAIAILVSQREHGL 276
Q V+EL+ + + + S ++ L
Sbjct: 1759 PVQQVKELNPDEASPQVNTSADQNTL 1784
>gi|239756135 PREDICTED: similar to AGAP002076-PA [Homo sapiens]
Length = 522
Score = 30.8 bits (68), Expect = 1.8
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 56 DARVMCGKGVVLGPLQEKPPSDGVEHGHAADVAP-VVLNEALELLHRLVETAALELLSAQ 114
DAR+ LG L + G + H A V P V+L ALELL ++ A +E+L+AQ
Sbjct: 258 DARLRGRAQGALGAL-----ASGAQPPHGALVGPNVLLVLALELLRQVAHHAVVEVLTAQ 312
Query: 115 VPAA 118
V A
Sbjct: 313 VGVA 316
>gi|239750666 PREDICTED: hypothetical protein XP_002347503 [Homo
sapiens]
Length = 522
Score = 30.8 bits (68), Expect = 1.8
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 56 DARVMCGKGVVLGPLQEKPPSDGVEHGHAADVAP-VVLNEALELLHRLVETAALELLSAQ 114
DAR+ LG L + G + H A V P V+L ALELL ++ A +E+L+AQ
Sbjct: 258 DARLRGRAQGALGAL-----ASGAQPPHGALVGPNVLLVLALELLRQVAHHAVVEVLTAQ 312
Query: 115 VPAA 118
V A
Sbjct: 313 VGVA 316
>gi|239744976 PREDICTED: hypothetical protein XP_002343322 [Homo
sapiens]
Length = 522
Score = 30.8 bits (68), Expect = 1.8
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 56 DARVMCGKGVVLGPLQEKPPSDGVEHGHAADVAP-VVLNEALELLHRLVETAALELLSAQ 114
DAR+ LG L + G + H A V P V+L ALELL ++ A +E+L+AQ
Sbjct: 258 DARLRGRAQGALGAL-----ASGAQPPHGALVGPNVLLVLALELLRQVAHHAVVEVLTAQ 312
Query: 115 VPAA 118
V A
Sbjct: 313 VGVA 316
>gi|149773449 zinc finger protein 862 [Homo sapiens]
Length = 1169
Score = 30.4 bits (67), Expect = 2.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 268 LVSQREHGLHKHVLGLEAQGLGKLGPAQLTAALISSCSRSSHSWMLNP 315
++ +R+ L++ V+ + + L LGPA LIS R + W+ +P
Sbjct: 349 MLDKRQKELYRDVMRMNYELLASLGPAAAKPDLISKLERRAAPWIKDP 396
>gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens]
Length = 931
Score = 30.0 bits (66), Expect = 3.1
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 151 LEISMKD-LGLGERNHPALTGACDPDTGHTDSIAPSSLSHLFALASLP--------WPIL 201
+E S+K+ + +G+ N+P + + D +D+++P + + S+P P+L
Sbjct: 91 VESSLKEAIIVGQVNYPKVADSSSFDEDSSDALSPEQPASHESQGSVPSPLEARVSEPLL 150
Query: 202 LAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASPIIPSSLT 247
A + Q +L +G ++ + + + P P P++P SLT
Sbjct: 151 SATSASPTQVVSQLPMGRDSREMLFLAEQ---PPLPPPPLLPPSLT 193
>gi|145580608 WD repeat domain 62 isoform 1 [Homo sapiens]
Length = 1523
Score = 29.3 bits (64), Expect = 5.3
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
Query: 138 STTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTDSIAPSSLSHLFALASLP 197
ST S +R LE K LG+ +N LT CDP TGH +A +
Sbjct: 49 STASEETVQNRVSLE---KVLGITAQNSSGLT--CDPGTGHVAYLAGCVV---------- 93
Query: 198 WPILLAVPENKPQH 211
++L ENK QH
Sbjct: 94 --VILDPKENKQQH 105
>gi|145580610 WD repeat domain 62 isoform 2 [Homo sapiens]
Length = 1518
Score = 29.3 bits (64), Expect = 5.3
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
Query: 138 STTSASWALDRQLLEISMKDLGLGERNHPALTGACDPDTGHTDSIAPSSLSHLFALASLP 197
ST S +R LE K LG+ +N LT CDP TGH +A +
Sbjct: 49 STASEETVQNRVSLE---KVLGITAQNSSGLT--CDPGTGHVAYLAGCVV---------- 93
Query: 198 WPILLAVPENKPQH 211
++L ENK QH
Sbjct: 94 --VILDPKENKQQH 105
>gi|6912676 SKI-interacting protein [Homo sapiens]
Length = 536
Score = 28.9 bits (63), Expect = 6.9
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 2 EVHGGVEGHVAVEEGFSQEGDEVAAHGEQDVGEHERDAGCCAP 44
E G++ HV E+G ++E DE+ H + +H+R+ AP
Sbjct: 333 ERRAGIKTHVEKEDGEARERDEI-RHDRRKERQHDRNLSRAAP 374
>gi|239748426 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 333
Score = 28.5 bits (62), Expect = 9.0
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 189 HLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASPIIPSSLTF 248
H++ + IL A PQ + LI G A+P ++VH HK PS+L
Sbjct: 181 HIYVCMCIYTYILKAYIWTSPQAKNHLIPGIPAVPPQLVHTLHK----------PSALDA 230
Query: 249 HEDHQD 254
D +D
Sbjct: 231 RVDFED 236
>gi|239742359 PREDICTED: hypothetical protein XP_002342501, partial
[Homo sapiens]
Length = 333
Score = 28.5 bits (62), Expect = 9.0
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 189 HLFALASLPWPILLAVPENKPQHPDELILGNEAIPIKVVHAEHKISPCPASPIIPSSLTF 248
H++ + IL A PQ + LI G A+P ++VH HK PS+L
Sbjct: 181 HIYVCMCIYTYILKAYIWTSPQAKNHLIPGIPAVPPQLVHTLHK----------PSALDA 230
Query: 249 HEDHQD 254
D +D
Sbjct: 231 RVDFED 236
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 28.5 bits (62), Expect = 9.0
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 204 VPENKPQHPDELILGNEAIPIKVVHAEHK--ISPCPASPIIPSSLTFHEDHQDVQELSEG 261
V + P +L++ + +P++ + + H+ IS CP ++ L ++ ++ ELS G
Sbjct: 676 VVSREESRPPKLVMESVTLPLETLVSPHEESISLCPEEQLVIERLQGEKEQKENSELSTG 735
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,280,813
Number of Sequences: 37866
Number of extensions: 688698
Number of successful extensions: 1426
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1419
Number of HSP's gapped (non-prelim): 18
length of query: 339
length of database: 18,247,518
effective HSP length: 103
effective length of query: 236
effective length of database: 14,347,320
effective search space: 3385967520
effective search space used: 3385967520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.