Guide to the Human Genome
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Name: LOC100291310 Sequence: fasta or formatted (90aa) NCBI GI: 239750499
Description:

PREDICTED: hypothetical protein XP_002347422

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         10           2
 C cysteine            2.2          2           1
 D aspartate           2.2          2           1
 E glutamate           2.2          2           1
 F phenylalanine       2.2          2           1
 G glycine             7.8          7           1
 H histidine           5.6          5           1
 I isoleucine          1.1          1           1
 K lysine              4.4          4           1
 L leucine            17.8         16           2
 M methionine          1.1          1           1
 N asparagine          3.3          3           1
 P proline             4.4          4           1
 Q glutamine           2.2          2           1
 R arginine            4.4          4           1
 S serine             14.4         13           2
 T threonine           4.4          4           1
 V valine              4.4          4           1
 W tryptophan          1.1          1           1
 Y tyrosine            3.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347422 
LOC100287306          1.000   PREDICTED: hypothetical protein XP_002343273 
LOC100293442          0.841   PREDICTED: hypothetical protein 
SIM2                  0.019   single-minded homolog 2 short isoform 
CTTNBP2               0.006   cortactin binding protein 2 
ACO2                  0.000   aconitase 2, mitochondrial precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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