BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239753782 PREDICTED: hypothetical protein XP_002345774 [Homo sapiens] (118 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239753782 PREDICTED: hypothetical protein XP_002345774 [Homo ... 246 4e-66 gi|239748342 PREDICTED: hypothetical protein XP_002346640 [Homo ... 246 4e-66 gi|169636439 cholesteryl ester transfer protein, plasma precurso... 31 0.24 gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 30 0.31 gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 30 0.31 gi|169166962 PREDICTED: similar to COMM domain containing 5 [Hom... 30 0.53 gi|169166771 PREDICTED: similar to COMM domain containing 5 [Hom... 30 0.53 gi|169166418 PREDICTED: similar to COMM domain containing 5 [Hom... 30 0.53 gi|9506615 protein arginine methyltransferase 7 [Homo sapiens] 28 2.0 gi|7662058 tectonin beta-propeller repeat containing 2 [Homo sap... 28 2.0 gi|40804761 nanos homolog 1 [Homo sapiens] 27 2.6 gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens] 27 2.6 gi|56676337 transmembrane protein 28 [Homo sapiens] 27 3.5 gi|6912330 deafness locus associated putative guanine nucleotide... 27 4.5 gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens] 26 5.9 gi|24307871 kidney predominant protein NCU-G1 [Homo sapiens] 26 7.7 gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 26 7.7 gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 26 7.7 gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 26 7.7 >gi|239753782 PREDICTED: hypothetical protein XP_002345774 [Homo sapiens] Length = 118 Score = 246 bits (627), Expect = 4e-66 Identities = 118/118 (100%), Positives = 118/118 (100%) Query: 1 MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ 60 MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ Sbjct: 1 MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ 60 Query: 61 CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP 118 CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP Sbjct: 61 CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP 118 >gi|239748342 PREDICTED: hypothetical protein XP_002346640 [Homo sapiens] Length = 118 Score = 246 bits (627), Expect = 4e-66 Identities = 118/118 (100%), Positives = 118/118 (100%) Query: 1 MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ 60 MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ Sbjct: 1 MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ 60 Query: 61 CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP 118 CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP Sbjct: 61 CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP 118 >gi|169636439 cholesteryl ester transfer protein, plasma precursor [Homo sapiens] Length = 493 Score = 30.8 bits (68), Expect = 0.24 Identities = 14/28 (50%), Positives = 18/28 (64%) Query: 1 MAATTLRTAALAGNLEGCSRGGTGQAGI 28 M A T+ T AL GN CS+G + +AGI Sbjct: 1 MLAATVLTLALLGNAHACSKGTSHEAGI 28 >gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo sapiens] Length = 594 Score = 30.4 bits (67), Expect = 0.31 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 42 AAATHEGVELWSQQGLRPQCGEAAAQL-RPLWGCQALLWGPLEAGFC 87 A THE L + R + G+AAAQ+ R WG +A L G G C Sbjct: 370 AVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKC 416 >gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo sapiens] Length = 594 Score = 30.4 bits (67), Expect = 0.31 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 42 AAATHEGVELWSQQGLRPQCGEAAAQL-RPLWGCQALLWGPLEAGFC 87 A THE L + R + G+AAAQ+ R WG +A L G G C Sbjct: 370 AVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKC 416 >gi|169166962 PREDICTED: similar to COMM domain containing 5 [Homo sapiens] Length = 273 Score = 29.6 bits (65), Expect = 0.53 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Query: 67 QLRPLWGCQALLWGPLEAGFCLWSP 91 Q +P +GC + WG L G C+W P Sbjct: 15 QKKPAFGC--IGWGSLAPGICIWDP 37 >gi|169166771 PREDICTED: similar to COMM domain containing 5 [Homo sapiens] Length = 273 Score = 29.6 bits (65), Expect = 0.53 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Query: 67 QLRPLWGCQALLWGPLEAGFCLWSP 91 Q +P +GC + WG L G C+W P Sbjct: 15 QKKPAFGC--IGWGSLAPGICIWDP 37 >gi|169166418 PREDICTED: similar to COMM domain containing 5 [Homo sapiens] Length = 273 Score = 29.6 bits (65), Expect = 0.53 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Query: 67 QLRPLWGCQALLWGPLEAGFCLWSP 91 Q +P +GC + WG L G C+W P Sbjct: 15 QKKPAFGC--IGWGSLAPGICIWDP 37 >gi|9506615 protein arginine methyltransferase 7 [Homo sapiens] Length = 692 Score = 27.7 bits (60), Expect = 2.0 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Query: 44 ATHEGVELW-SQQGLRPQCGEAAAQLRPLWGCQA-LLW 79 A H+ +W S Q P+ E Q+RP+ CQA LLW Sbjct: 337 AHHDDYCVWYSLQRTSPEKNERVRQMRPVCDCQAHLLW 374 >gi|7662058 tectonin beta-propeller repeat containing 2 [Homo sapiens] Length = 1411 Score = 27.7 bits (60), Expect = 2.0 Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 15/95 (15%) Query: 31 SRMRCAVLTSSAAATHEGVELWSQQGLRPQCGEAA---------------AQLRPLWGCQ 75 S + A + +SAA T EG LW Q + C +A A++R CQ Sbjct: 1119 SATKWAFVLASAAPTKEGSFLWLCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQ 1178 Query: 76 ALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQL 110 LW G S G+ T + SQL Sbjct: 1179 DALWALDSLGQVFIRTLSKSCPTGMHWTRLDLSQL 1213 >gi|40804761 nanos homolog 1 [Homo sapiens] Length = 292 Score = 27.3 bits (59), Expect = 2.6 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%) Query: 1 MAATTLRTAALAGNLE-GCSRGGTGQAGIPGSRMRCAVLTSSAAATHEG 48 + TL T A+ G GC+RGG G G P S +SS + H G Sbjct: 47 LGLATLITKAVDGEPRFGCARGGNGGGGSPPSSS-----SSSCCSPHTG 90 >gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens] Length = 446 Score = 27.3 bits (59), Expect = 2.6 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 9/70 (12%) Query: 29 PGSRMRCAVLTSSAAATHEGVELWSQQGLRPQCGEAAAQLRPLWGCQALLWG---PLEAG 85 P RC V A +H V +WS + L +CG A P+W + L P + Sbjct: 230 PAHTCRCGV----PACSH--VPMWSARLLTCRCGVPACSHVPMWSARLLTCRCGVPACSH 283 Query: 86 FCLWSPQILS 95 +WS ++L+ Sbjct: 284 VPMWSARLLT 293 >gi|56676337 transmembrane protein 28 [Homo sapiens] Length = 472 Score = 26.9 bits (58), Expect = 3.5 Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 51 LWSQQGLRPQCGEAAAQLRPLWG 73 LW G RP+ E ++ +RP WG Sbjct: 61 LWLCAGARPRARELSSAMRPPWG 83 >gi|6912330 deafness locus associated putative guanine nucleotide exchange factor [Homo sapiens] Length = 458 Score = 26.6 bits (57), Expect = 4.5 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 13 GNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQCGEAAAQLRPLW 72 G + C GQ G+P RC V A H+ + GLR A+ + W Sbjct: 120 GQVLSCGSNSFGQLGVPHGPRRCVV--PQAIELHKEKVVCIAAGLRHAVAATASGIVFQW 177 Query: 73 G 73 G Sbjct: 178 G 178 >gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens] Length = 3996 Score = 26.2 bits (56), Expect = 5.9 Identities = 12/36 (33%), Positives = 15/36 (41%) Query: 35 CAVLTSSAAATHEGVELWSQQGLRPQCGEAAAQLRP 70 C V+T AAA W+Q GL G + P Sbjct: 1581 CEVITEEAAAALRKATKWAQSGLIVSIGPPVESINP 1616 >gi|24307871 kidney predominant protein NCU-G1 [Homo sapiens] Length = 406 Score = 25.8 bits (55), Expect = 7.7 Identities = 9/15 (60%), Positives = 10/15 (66%) Query: 77 LLWGPLEAGFCLWSP 91 LLWG L +GF W P Sbjct: 270 LLWGSLPSGFAQWRP 284 >gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo sapiens] Length = 1135 Score = 25.8 bits (55), Expect = 7.7 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%) Query: 59 PQCGEAAAQLRPLWGCQ------ALLWGPLEAGFCLWSPQIL 94 P+C AA Q R W C+ L+W L+ GF W + L Sbjct: 251 PECYLAACQKRDNWFCEPCSNPHPLVWAKLK-GFPFWPAKAL 291 >gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo sapiens] Length = 1188 Score = 25.8 bits (55), Expect = 7.7 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%) Query: 59 PQCGEAAAQLRPLWGCQ------ALLWGPLEAGFCLWSPQIL 94 P+C AA Q R W C+ L+W L+ GF W + L Sbjct: 276 PECYLAACQKRDNWFCEPCSNPHPLVWAKLK-GFPFWPAKAL 316 >gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo sapiens] Length = 1160 Score = 25.8 bits (55), Expect = 7.7 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%) Query: 59 PQCGEAAAQLRPLWGCQ------ALLWGPLEAGFCLWSPQIL 94 P+C AA Q R W C+ L+W L+ GF W + L Sbjct: 276 PECYLAACQKRDNWFCEPCSNPHPLVWAKLK-GFPFWPAKAL 316 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.131 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,684,333 Number of Sequences: 37866 Number of extensions: 195186 Number of successful extensions: 704 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 696 Number of HSP's gapped (non-prelim): 20 length of query: 118 length of database: 18,247,518 effective HSP length: 88 effective length of query: 30 effective length of database: 14,915,310 effective search space: 447459300 effective search space used: 447459300 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.