Guide to the Human Genome
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Name: C1orf85 Sequence: fasta or formatted (406aa) NCBI GI: 24307871
Description:

kidney predominant protein NCU-G1

Referenced in:

Kidney

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         34           2
 C cysteine            1.5          6           1
 D aspartate           3.7         15           2
 E glutamate           2.7         11           1
 F phenylalanine       4.7         19           2
 G glycine             8.6         35           3
 H histidine           2.7         11           2
 I isoleucine          2.2          9           1
 K lysine              1.5          6           2
 L leucine            14.8         60           3
 M methionine          2.0          8           1
 N asparagine          3.7         15           2
 P proline             9.1         37           2
 Q glutamine           4.7         19           1
 R arginine            3.7         15           1
 S serine             10.1         41           2
 T threonine           5.2         21           1
 V valine              5.7         23           2
 W tryptophan          2.7         11           1
 Y tyrosine            2.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   kidney predominant protein NCU-G1 
PIP5K1C               0.015   phosphatidylinositol-4-phosphate 5-kinase, type I, g...
FCGR2C                0.009   Fc fragment of IgG, low affinity IIc, receptor [Hom...
FCGR2B                0.009   Fc fragment of IgG, low affinity IIb, receptor isofo...
FCGR2B                0.009   Fc fragment of IgG, low affinity IIb, receptor isofo...
MAP3K7                0.007   mitogen-activated protein kinase kinase kinase 7 iso...
MAP3K7                0.007   mitogen-activated protein kinase kinase kinase 7 iso...
MAP3K7                0.007   mitogen-activated protein kinase kinase kinase 7 iso...
MAP3K7                0.007   mitogen-activated protein kinase kinase kinase 7 isof...
EP400                 0.007   E1A binding protein p400 
FCGR2B                0.006   Fc fragment of IgG, low affinity IIb, receptor isofo...
FCGR2B                0.006   Fc fragment of IgG, low affinity IIb, receptor isofo...
PLAG1                 0.006   pleiomorphic adenoma gene 1 isoform b 
PLAG1                 0.006   pleiomorphic adenoma gene 1 isoform a 
PLAG1                 0.006   pleiomorphic adenoma gene 1 isoform a 
GLI1                  0.005   GLI family zinc finger 1 isoform 2 
GLI1                  0.005   GLI family zinc finger 1 isoform 1 
LOC100291726          0.005   PREDICTED: similar to family with sequence similari...
LHX1                  0.005   LIM homeobox protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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