Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239753690
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo
sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo ... 387 e-108
gi|239748288 PREDICTED: hypothetical protein [Homo sapiens] 232 1e-61
gi|239742188 PREDICTED: hypothetical protein XP_002342448 [Homo ... 232 1e-61
gi|239756338 PREDICTED: hypothetical protein XP_002344884 [Homo ... 34 0.064
gi|239745187 PREDICTED: hypothetical protein XP_002343385 [Homo ... 34 0.064
gi|205277468 leucine rich repeat containing 15 isoform a [Homo s... 31 0.54
gi|18677767 leucine rich repeat containing 15 isoform b [Homo sa... 31 0.54
gi|18079216 CASK interacting protein 1 [Homo sapiens] 31 0.70
gi|44662832 S-phase 2 protein isoform 2 [Homo sapiens] 29 2.7
gi|44662828 S-phase 2 protein isoform 4 [Homo sapiens] 29 2.7
gi|44662830 S-phase 2 protein isoform 1 [Homo sapiens] 29 2.7
gi|44662826 S-phase 2 protein isoform 3 [Homo sapiens] 29 2.7
gi|25121980 dispatched B [Homo sapiens] 28 3.5
>gi|239753690 PREDICTED: hypothetical protein XP_002345753 [Homo
sapiens]
Length = 186
Score = 387 bits (995), Expect = e-108
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MTLLEYVQSYAEKHCKKETMCSNPKNVLENNKVIYWECPETGKAEEDATMNPCCPIFHSV 60
MTLLEYVQSYAEKHCKKETMCSNPKNVLENNKVIYWECPETGKAEEDATMNPCCPIFHSV
Sbjct: 1 MTLLEYVQSYAEKHCKKETMCSNPKNVLENNKVIYWECPETGKAEEDATMNPCCPIFHSV 60
Query: 61 ALIESCLGTASLAGPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVVS 120
ALIESCLGTASLAGPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVVS
Sbjct: 61 ALIESCLGTASLAGPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVVS 120
Query: 121 PALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLVG 180
PALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLVG
Sbjct: 121 PALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLVG 180
Query: 181 VEEVTP 186
VEEVTP
Sbjct: 181 VEEVTP 186
>gi|239748288 PREDICTED: hypothetical protein [Homo sapiens]
Length = 129
Score = 232 bits (592), Expect = 1e-61
Identities = 117/127 (92%), Positives = 119/127 (93%), Gaps = 1/127 (0%)
Query: 61 ALIESCLGTASLAG-PLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVV 119
+LI S +AG PLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVV
Sbjct: 3 SLISSLGWEEPMAGRPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVV 62
Query: 120 SPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLV 179
SPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLV
Sbjct: 63 SPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLV 122
Query: 180 GVEEVTP 186
GVEEVTP
Sbjct: 123 GVEEVTP 129
>gi|239742188 PREDICTED: hypothetical protein XP_002342448 [Homo
sapiens]
Length = 129
Score = 232 bits (592), Expect = 1e-61
Identities = 117/127 (92%), Positives = 119/127 (93%), Gaps = 1/127 (0%)
Query: 61 ALIESCLGTASLAG-PLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVV 119
+LI S +AG PLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVV
Sbjct: 3 SLISSLGWEEPMAGRPLGVEILHIQLHSYLSPVPVEDPEDGRVRLVGQIRENFEAVLHVV 62
Query: 120 SPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLV 179
SPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLV
Sbjct: 63 SPALDGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALHHLHGVPAGLHDGLHLV 122
Query: 180 GVEEVTP 186
GVEEVTP
Sbjct: 123 GVEEVTP 129
>gi|239756338 PREDICTED: hypothetical protein XP_002344884 [Homo
sapiens]
Length = 339
Score = 34.3 bits (77), Expect = 0.064
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 95 EDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLG 142
ED +D V ++ E A+ +VS G+H+HV+ LE GLGKLG
Sbjct: 250 EDHQD-----VQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLG 292
>gi|239745187 PREDICTED: hypothetical protein XP_002343385 [Homo
sapiens]
Length = 339
Score = 34.3 bits (77), Expect = 0.064
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 95 EDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLG 142
ED +D V ++ E A+ +VS G+H+HV+ LE GLGKLG
Sbjct: 250 EDHQD-----VQELSEGQVAIAILVSQREHGLHKHVLGLEAQGLGKLG 292
>gi|205277468 leucine rich repeat containing 15 isoform a [Homo
sapiens]
Length = 587
Score = 31.2 bits (69), Expect = 0.54
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 124 DGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALH--HLHGVPAGLHDGL 176
DG H+V L LGK L HI P L +L L L+ L +P G DGL
Sbjct: 172 DGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGL 226
>gi|18677767 leucine rich repeat containing 15 isoform b [Homo
sapiens]
Length = 581
Score = 31.2 bits (69), Expect = 0.54
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 124 DGVHRHVVVLELPGLGKLGLEHIKPPESIVLHDLGYLALH--HLHGVPAGLHDGL 176
DG H+V L LGK L HI P L +L L L+ L +P G DGL
Sbjct: 166 DGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGL 220
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 30.8 bits (68), Expect = 0.70
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 91 PVPVEDPEDGRVRLVGQIRENFEAVLHVVSPALDGVHRHVVVLELPGLGKLGLEHIKPPE 150
PVP +PEDG + + Q R + V + + V +LEL +G G +PPE
Sbjct: 966 PVPDAEPEDGLLGVRAQCRRASDLAGSVDTGSAGSVKSIAAMLELSSIGGGGRAARRPPE 1025
>gi|44662832 S-phase 2 protein isoform 2 [Homo sapiens]
Length = 279
Score = 28.9 bits (63), Expect = 2.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 52 PC---CPIFHSVALIESCLGTASLAGPLGV-EILHIQLHSYLSPVPV 94
PC C + H+V+ +SC G +S G + V +LH +LH P PV
Sbjct: 134 PCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELH---GPGPV 177
>gi|44662828 S-phase 2 protein isoform 4 [Homo sapiens]
Length = 316
Score = 28.9 bits (63), Expect = 2.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 52 PC---CPIFHSVALIESCLGTASLAGPLGV-EILHIQLHSYLSPVPV 94
PC C + H+V+ +SC G +S G + V +LH +LH P PV
Sbjct: 134 PCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELH---GPGPV 177
>gi|44662830 S-phase 2 protein isoform 1 [Homo sapiens]
Length = 316
Score = 28.9 bits (63), Expect = 2.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 52 PC---CPIFHSVALIESCLGTASLAGPLGV-EILHIQLHSYLSPVPV 94
PC C + H+V+ +SC G +S G + V +LH +LH P PV
Sbjct: 134 PCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELH---GPGPV 177
>gi|44662826 S-phase 2 protein isoform 3 [Homo sapiens]
Length = 316
Score = 28.9 bits (63), Expect = 2.7
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 52 PC---CPIFHSVALIESCLGTASLAGPLGV-EILHIQLHSYLSPVPV 94
PC C + H+V+ +SC G +S G + V +LH +LH P PV
Sbjct: 134 PCTTLCQVLHAVSHQDSCPGDSSSVGKVSVLGLLHEELH---GPGPV 177
>gi|25121980 dispatched B [Homo sapiens]
Length = 1401
Score = 28.5 bits (62), Expect = 3.5
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 8 QSYAEKHCKKETMCSNPKNVLENNKVIYWECPETGKAEEDATM---NPCCPIFHSVALIE 64
Q A C N VL N C +T +A+ T+ C +HS AL+
Sbjct: 327 QRTAANQCCPSWSLGNYLAVLSNRS----SCLDTTQADAARTLALLRTCALYYHSGALVP 382
Query: 65 SCLGTASLAGP 75
SCLG P
Sbjct: 383 SCLGPGQNKSP 393
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,379,137
Number of Sequences: 37866
Number of extensions: 408905
Number of successful extensions: 851
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 13
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.