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Search of human proteins with 239753585
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753585 PREDICTED: hypothetical protein [Homo sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753585 PREDICTED: hypothetical protein [Homo sapiens] 287 2e-78
gi|169175458 PREDICTED: similar to hCG2040468 [Homo sapiens] 29 1.4
gi|239754305 PREDICTED: hypothetical protein XP_002345935 [Homo ... 28 1.8
gi|239748844 PREDICTED: hypothetical protein XP_002346836 [Homo ... 28 1.8
gi|239742871 PREDICTED: hypothetical protein XP_002342668 [Homo ... 28 1.8
gi|119964718 desmoglein 3 preproprotein [Homo sapiens] 27 4.1
gi|22027554 voltage-dependent calcium channel gamma-6 subunit is... 27 4.1
gi|22027557 voltage-dependent calcium channel gamma-6 subunit is... 27 4.1
gi|239754132 PREDICTED: hypothetical protein [Homo sapiens] 27 5.4
gi|239748617 PREDICTED: hypothetical protein XP_002346744 [Homo ... 27 5.4
gi|239746465 PREDICTED: hypothetical protein XP_002344255 [Homo ... 27 5.4
gi|239742644 PREDICTED: hypothetical protein XP_002342602 [Homo ... 27 5.4
gi|113412653 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|53829376 plakophilin 4 isoform b [Homo sapiens] 26 9.2
gi|53829374 plakophilin 4 isoform a [Homo sapiens] 26 9.2
gi|145309328 papilin [Homo sapiens] 26 9.2
>gi|239753585 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 287 bits (735), Expect = 2e-78
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MSLGGVRAKSRGVRVSSLGSYLRYPGTSEEARLSHQAWSVRVWPLCSGAAPGACAQGIPV 60
MSLGGVRAKSRGVRVSSLGSYLRYPGTSEEARLSHQAWSVRVWPLCSGAAPGACAQGIPV
Sbjct: 1 MSLGGVRAKSRGVRVSSLGSYLRYPGTSEEARLSHQAWSVRVWPLCSGAAPGACAQGIPV 60
Query: 61 LLLGALEFATARQGASCSRGAPEWEGLTSGFLPGALASRRFLRCGQGEGPRKRNCSEFCF 120
LLLGALEFATARQGASCSRGAPEWEGLTSGFLPGALASRRFLRCGQGEGPRKRNCSEFCF
Sbjct: 61 LLLGALEFATARQGASCSRGAPEWEGLTSGFLPGALASRRFLRCGQGEGPRKRNCSEFCF 120
Query: 121 FPTGTRQQESSVGHPRRK 138
FPTGTRQQESSVGHPRRK
Sbjct: 121 FPTGTRQQESSVGHPRRK 138
>gi|169175458 PREDICTED: similar to hCG2040468 [Homo sapiens]
Length = 376
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 16/68 (23%)
Query: 42 VWPLCSGAAPGACAQGIPVLLLGALEFATARQGASCSR---------------GAPEWEG 86
+WPL S G C+ G PVL+ G + + ++ GA W G
Sbjct: 257 IWPL-SEQVTGPCSSGAPVLVAGVAGWLKKKSRSAMEEAEVAKEEPGPGLRLVGASGWRG 315
Query: 87 LTSGFLPG 94
+ +LPG
Sbjct: 316 ASEVWLPG 323
>gi|239754305 PREDICTED: hypothetical protein XP_002345935 [Homo
sapiens]
Length = 156
Score = 28.5 bits (62), Expect = 1.8
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 48 GAAPGACAQGIPVLLLGALEFATARQG-ASCSRGAPEWEGLTSG---FLPGALASRRFLR 103
GAA GA A +P + GA+ A A G A+ + E G G LPG A R
Sbjct: 93 GAAAGAGAGAVPKAMPGAVAVAVAAGGVAAVAAAGAEGRGRVGGQLRALPGLAAGGRASG 152
Query: 104 CGQ 106
GQ
Sbjct: 153 VGQ 155
>gi|239748844 PREDICTED: hypothetical protein XP_002346836 [Homo
sapiens]
Length = 156
Score = 28.5 bits (62), Expect = 1.8
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 48 GAAPGACAQGIPVLLLGALEFATARQG-ASCSRGAPEWEGLTSG---FLPGALASRRFLR 103
GAA GA A +P + GA+ A A G A+ + E G G LPG A R
Sbjct: 93 GAAAGAGAGAVPKAMPGAVAVAVAAGGVAAVAAAGAEGRGRVGGQLRALPGLAAGGRASG 152
Query: 104 CGQ 106
GQ
Sbjct: 153 VGQ 155
>gi|239742871 PREDICTED: hypothetical protein XP_002342668 [Homo
sapiens]
Length = 156
Score = 28.5 bits (62), Expect = 1.8
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 48 GAAPGACAQGIPVLLLGALEFATARQG-ASCSRGAPEWEGLTSG---FLPGALASRRFLR 103
GAA GA A +P + GA+ A A G A+ + E G G LPG A R
Sbjct: 93 GAAAGAGAGAVPKAMPGAVAVAVAAGGVAAVAAAGAEGRGRVGGQLRALPGLAAGGRASG 152
Query: 104 CGQ 106
GQ
Sbjct: 153 VGQ 155
>gi|119964718 desmoglein 3 preproprotein [Homo sapiens]
Length = 999
Score = 27.3 bits (59), Expect = 4.1
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 24 YPGTSEEARLSHQAWSVRVWPLCSGAAPGACAQGIPVLLLGALEFATARQGASCSRGAPE 83
YP TS R + S R+ P AA G G+ +LLL L T C GA
Sbjct: 599 YPTTSPGTRYG-RPHSGRLGP----AAIGLLLLGLLLLLLAPLLLLT------CDCGAGS 647
Query: 84 WEGLTSGFLP 93
G+T GF+P
Sbjct: 648 TGGVTGGFIP 657
>gi|22027554 voltage-dependent calcium channel gamma-6 subunit
isoform a [Homo sapiens]
Length = 260
Score = 27.3 bits (59), Expect = 4.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 104 CGQGEGPRKRNCSEFCFFPTG 124
CG E P + NC+ F FF TG
Sbjct: 103 CGPAELPGEANCTYFKFFTTG 123
>gi|22027557 voltage-dependent calcium channel gamma-6 subunit
isoform b [Homo sapiens]
Length = 214
Score = 27.3 bits (59), Expect = 4.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 104 CGQGEGPRKRNCSEFCFFPTG 124
CG E P + NC+ F FF TG
Sbjct: 103 CGPAELPGEANCTYFKFFTTG 123
>gi|239754132 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 26.9 bits (58), Expect = 5.4
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 9 KSRGVRVSSLGSYLRYPGTSEEARLSHQAWSVRVWPLCSGAAPGACAQGIP---VLLLGA 65
+S G ++ L GT+ AR A S P S A PG+ + +P +LL
Sbjct: 112 RSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAE 171
Query: 66 LEFATARQGASCSRGAPEWEGLTSGFLPGALA 97
F + + +W GL G PGA A
Sbjct: 172 RSFTWGGRRGTEKNPPGKWTGLAPG--PGAAA 201
>gi|239748617 PREDICTED: hypothetical protein XP_002346744 [Homo
sapiens]
Length = 217
Score = 26.9 bits (58), Expect = 5.4
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 9 KSRGVRVSSLGSYLRYPGTSEEARLSHQAWSVRVWPLCSGAAPGACAQGIP---VLLLGA 65
+S G ++ L GT+ AR A S P S A PG+ + +P +LL
Sbjct: 112 RSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAE 171
Query: 66 LEFATARQGASCSRGAPEWEGLTSGFLPGALA 97
F + + +W GL G PGA A
Sbjct: 172 RSFTWGGRRGTEKNPPGKWTGLAPG--PGAAA 201
>gi|239746465 PREDICTED: hypothetical protein XP_002344255 [Homo
sapiens]
Length = 271
Score = 26.9 bits (58), Expect = 5.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 74 GASCSRGAPEWEGLTSGFLPGALASRRFLRCGQGEGPR 111
G + PE + LT LPGAL + L G+GPR
Sbjct: 217 GGAGGESPPEAQVLTVAGLPGALWNLLSLEMRAGDGPR 254
>gi|239742644 PREDICTED: hypothetical protein XP_002342602 [Homo
sapiens]
Length = 217
Score = 26.9 bits (58), Expect = 5.4
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 9 KSRGVRVSSLGSYLRYPGTSEEARLSHQAWSVRVWPLCSGAAPGACAQGIP---VLLLGA 65
+S G ++ L GT+ AR A S P S A PG+ + +P +LL
Sbjct: 112 RSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAE 171
Query: 66 LEFATARQGASCSRGAPEWEGLTSGFLPGALA 97
F + + +W GL G PGA A
Sbjct: 172 RSFTWGGRRGTEKNPPGKWTGLAPG--PGAAA 201
>gi|113412653 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 26.6 bits (57), Expect = 7.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 104 CGQGEGPRKRNCSEFCFFPTGTRQQESSVGHPRR 137
C QG R C++ G+ Q ESS G PRR
Sbjct: 62 CTQGTSTRAGPCTQGVPMQGGSVQDESSGGGPRR 95
>gi|53829376 plakophilin 4 isoform b [Homo sapiens]
Length = 1149
Score = 26.2 bits (56), Expect = 9.2
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 10 SRGVRVSSLGSYLRYPGTSEEARLSHQAWSVRVWPLCSGAAPGACAQGIPVLLLGALEFA 69
SRG +SLGS P ++ L+ A+S P A+P + P + +
Sbjct: 233 SRGSLRTSLGSGFGSPSVTDPRPLNPSAYSSTTLPAARAASPYSQRPASPT-AIRRIGSV 291
Query: 70 TARQGASCSRGAPEWE 85
T+RQ ++ + P+++
Sbjct: 292 TSRQTSNPNGPTPQYQ 307
>gi|53829374 plakophilin 4 isoform a [Homo sapiens]
Length = 1192
Score = 26.2 bits (56), Expect = 9.2
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 10 SRGVRVSSLGSYLRYPGTSEEARLSHQAWSVRVWPLCSGAAPGACAQGIPVLLLGALEFA 69
SRG +SLGS P ++ L+ A+S P A+P + P + +
Sbjct: 233 SRGSLRTSLGSGFGSPSVTDPRPLNPSAYSSTTLPAARAASPYSQRPASPT-AIRRIGSV 291
Query: 70 TARQGASCSRGAPEWE 85
T+RQ ++ + P+++
Sbjct: 292 TSRQTSNPNGPTPQYQ 307
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 26.2 bits (56), Expect = 9.2
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 16/50 (32%)
Query: 33 LSHQAWSVRVWPLCSGAAPGACAQGIPVLLLGALEFATARQGASCSRGAP 82
LS QAW V W LCS +C+ G T R+ C+ G P
Sbjct: 456 LSDQAWHVGTWGLCS----KSCSSG------------TRRRQVICAIGPP 489
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,234,381
Number of Sequences: 37866
Number of extensions: 291306
Number of successful extensions: 656
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 16
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.