Search of human proteins with 239753310

Search of human proteins with 239753310

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo
sapiens]
         (415 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo ...   845   0.0  
gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo ...   828   0.0  
gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]           354   9e-98
gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit ...    74   2e-13
gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit ...    74   2e-13
gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo ...    74   2e-13
gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ...    70   4e-12
gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit ...    70   4e-12
gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo ...    70   4e-12
gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ...    70   4e-12
gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo ...    70   4e-12
gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo ...    70   4e-12
gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ...    70   4e-12
gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo ...    70   4e-12
gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo ...    70   4e-12
gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit ...    69   6e-12
gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo ...    69   6e-12
gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo ...    69   6e-12
gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit ...    64   2e-10
gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo ...    64   2e-10
gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo ...    64   2e-10
gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]            62   7e-10
gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit ...    62   1e-09
gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo ...    62   1e-09
gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo ...    62   1e-09
gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]            60   4e-09
gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit ...    59   6e-09
gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo ...    59   6e-09
gi|196123582 cytochrome c oxidase subunit II [Homo sapiens neand...    59   8e-09
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         48   2e-05

>gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo
           sapiens]
          Length = 415

 Score =  845 bits (2183), Expect = 0.0
 Identities = 415/415 (100%), Positives = 415/415 (100%)

Query: 1   MGAQGLLRASCVQARGTSTRFHRGTRRTQETLHTHDSLIAVLDSGSLLSASGRRRRKLGS 60
           MGAQGLLRASCVQARGTSTRFHRGTRRTQETLHTHDSLIAVLDSGSLLSASGRRRRKLGS
Sbjct: 1   MGAQGLLRASCVQARGTSTRFHRGTRRTQETLHTHDSLIAVLDSGSLLSASGRRRRKLGS 60

Query: 61  GWNAASGGSPGLEAAGSPLPAGAQPCGRPRSGGIGDPVLRTPGPLSAQGRTPAVQDAPRC 120
           GWNAASGGSPGLEAAGSPLPAGAQPCGRPRSGGIGDPVLRTPGPLSAQGRTPAVQDAPRC
Sbjct: 61  GWNAASGGSPGLEAAGSPLPAGAQPCGRPRSGGIGDPVLRTPGPLSAQGRTPAVQDAPRC 120

Query: 121 LGAPRSEHPGRSAPLQRSSSYTLFAPQLPGTVLAPCSSKRLSLMPGNLGCGTGGWAASSI 180
           LGAPRSEHPGRSAPLQRSSSYTLFAPQLPGTVLAPCSSKRLSLMPGNLGCGTGGWAASSI
Sbjct: 121 LGAPRSEHPGRSAPLQRSSSYTLFAPQLPGTVLAPCSSKRLSLMPGNLGCGTGGWAASSI 180

Query: 181 VSHNYLFPVGSSLISSSNPETQLHSSSHLPAAGPSGPQGPLGYPGPPGVKDSKPMICIAL 240
           VSHNYLFPVGSSLISSSNPETQLHSSSHLPAAGPSGPQGPLGYPGPPGVKDSKPMICIAL
Sbjct: 181 VSHNYLFPVGSSLISSSNPETQLHSSSHLPAAGPSGPQGPLGYPGPPGVKDSKPMICIAL 240

Query: 241 ALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHSWASWVFL 300
           ALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHSWASWVFL
Sbjct: 241 ALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHSWASWVFL 300

Query: 301 VCLATPDARNSGDSWDFLAFLESVGRTEPEEAGDREKGPQSAPGGIGNLGPPGEMVTGKG 360
           VCLATPDARNSGDSWDFLAFLESVGRTEPEEAGDREKGPQSAPGGIGNLGPPGEMVTGKG
Sbjct: 301 VCLATPDARNSGDSWDFLAFLESVGRTEPEEAGDREKGPQSAPGGIGNLGPPGEMVTGKG 360

Query: 361 VNGQVFQLRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           VNGQVFQLRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV
Sbjct: 361 VNGQVFQLRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415


>gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo
           sapiens]
          Length = 433

 Score =  828 bits (2140), Expect = 0.0
 Identities = 413/433 (95%), Positives = 413/433 (95%), Gaps = 18/433 (4%)

Query: 1   MGAQGLLRASCVQARGTSTRFHRGTRRTQETLHTHDSLIAVLDSGSLLSASGRRRRKLGS 60
           MGAQGLLRASCVQARGTSTRFHRGTRRTQETLHTHDSLIAVLDSGSLLSASGRRRRKLGS
Sbjct: 1   MGAQGLLRASCVQARGTSTRFHRGTRRTQETLHTHDSLIAVLDSGSLLSASGRRRRKLGS 60

Query: 61  GWNAASGGSPGLEAAGSPLPAGAQPCGRPRSGGIGDPVLRTPGPLSAQGRTPAVQDAPRC 120
           GWNAASGGSPGLEAAGSPLPAGAQPCGRPRSGGIGDPVLRTPGPLSAQGRTPAVQDAPRC
Sbjct: 61  GWNAASGGSPGLEAAGSPLPAGAQPCGRPRSGGIGDPVLRTPGPLSAQGRTPAVQDAPRC 120

Query: 121 LGAPRSEHPGRSAPLQRSSSYTLFAPQLPGTVLAPCSSKRLSLMPGNLGCGTGGWAASSI 180
           LGAPRSEHPGRSAPLQRSSSYTLFAPQLPGTVLAPCSSKRLSLMPGNLGCGTGGWAASSI
Sbjct: 121 LGAPRSEHPGRSAPLQRSSSYTLFAPQLPGTVLAPCSSKRLSLMPGNLGCGTGGWAASSI 180

Query: 181 VSHNYLFPVGSSLISSSNPETQLHSSSHLPAAGPSGPQGPLGYPGPPGVKDSKPMICIAL 240
           VSHNYLFPVGSSLISSSNPETQLHSSSHLPAAGPSGPQGPLGYPGPPGVKDSKPMICIAL
Sbjct: 181 VSHNYLFPVGSSLISSSNPETQLHSSSHLPAAGPSGPQGPLGYPGPPGVKDSKPMICIAL 240

Query: 241 ALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHSWASWVFL 300
           ALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHSWASWVFL
Sbjct: 241 ALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGPDLIPRPPRLPLPLSHSWASWVFL 300

Query: 301 VCLATPDARNSGDSWDFLAFLESVGRTEPEEAGDRE------------------KGPQSA 342
           VCLATPDARNSGDSWDFLAFLESVGRTEPEEAGDRE                  KGPQSA
Sbjct: 301 VCLATPDARNSGDSWDFLAFLESVGRTEPEEAGDREKGPQGQPGPRGATGKSGAKGPQSA 360

Query: 343 PGGIGNLGPPGEMVTGKGVNGQVFQLRDEITFHDHTLVIVFLISSLVLYVISLILTIKLT 402
           PG IGNLGPPGEMVTGKGVNGQVFQLRDEITFHDH LVIVFLISSLVLYVISLILTIKLT
Sbjct: 361 PGRIGNLGPPGEMVTGKGVNGQVFQLRDEITFHDHILVIVFLISSLVLYVISLILTIKLT 420

Query: 403 NNSTIDAQEIETV 415
           NNSTIDAQEIETV
Sbjct: 421 NNSTIDAQEIETV 433


>gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score =  354 bits (908), Expect = 9e-98
 Identities = 183/221 (82%), Positives = 183/221 (82%), Gaps = 36/221 (16%)

Query: 213 GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL 272
           GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL
Sbjct: 43  GPSGPQGPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQPHSASLVPL 102

Query: 273 SPLGPDLIPRPPRLPLPLSHSWASWVFLVCLATPDARNSGDSWDFLAFLESVGRTEPEEA 332
           SPLGPDLIPRPPRLPLPLSHSW                  DSWDFLAFLESVGRTEP EA
Sbjct: 103 SPLGPDLIPRPPRLPLPLSHSW------------------DSWDFLAFLESVGRTEPGEA 144

Query: 333 GDRE------------------KGPQSAPGGIGNLGPPGEMVTGKGVNGQVFQLRDEITF 374
           GDRE                  KGPQSAPGGIGNLGPPGEMVTGKGVNGQVFQLRDEITF
Sbjct: 145 GDREKGPQGQPGPRGATGKSGAKGPQSAPGGIGNLGPPGEMVTGKGVNGQVFQLRDEITF 204

Query: 375 HDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           HDH LVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV
Sbjct: 205 HDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245


>gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit 2
           [Homo sapiens]
          Length = 64

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 37/57 (64%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 360 GVNGQVFQLRDEI-TFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           G+    F + +E+ TFHDHTL+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV
Sbjct: 8   GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64


>gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit 2
           [Homo sapiens]
          Length = 64

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 37/57 (64%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 360 GVNGQVFQLRDEI-TFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           G+    F + +E+ TFHDHTL+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV
Sbjct: 8   GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64


>gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo
           sapiens]
          Length = 64

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 37/57 (64%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 360 GVNGQVFQLRDEI-TFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           G+    F + +E+ TFHDHTL+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV
Sbjct: 8   GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64


>gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit II
           [Homo sapiens]
          Length = 64

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 33/48 (68%), Positives = 41/48 (85%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + + FHDHTL+I+FLISSLVLY+ISLILT KL + ST DAQE+ETV
Sbjct: 17  IEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64


>gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit 2
           [Homo sapiens]
          Length = 64

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + +TFHDH L+I+FLISSLVL +ISLILT KLT+  TIDAQEIETV
Sbjct: 17  IEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64


>gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo
           sapiens]
          Length = 53

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 369 RDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           R  +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST  AQEIETV
Sbjct: 7   RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo
           sapiens]
          Length = 64

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 33/48 (68%), Positives = 41/48 (85%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + + FHDHTL+I+FLISSLVLY+ISLILT KL + ST DAQE+ETV
Sbjct: 17  IEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64


>gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo
           sapiens]
          Length = 64

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + +TFHDH L+I+FLISSLVL +ISLILT KLT+  TIDAQEIETV
Sbjct: 17  IEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64


>gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo
           sapiens]
          Length = 53

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 369 RDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           R  +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST  AQEIETV
Sbjct: 7   RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo
           sapiens]
          Length = 64

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 33/48 (68%), Positives = 41/48 (85%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + + FHDHTL+I+FLISSLVLY+ISLILT KL + ST DAQE+ETV
Sbjct: 17  IEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64


>gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo
           sapiens]
          Length = 64

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + +TFHDH L+I+FLISSLVL +ISLILT KLT+  TIDAQEIETV
Sbjct: 17  IEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64


>gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo
           sapiens]
          Length = 53

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 369 RDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           R  +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST  AQEIETV
Sbjct: 7   RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2
           [Homo sapiens]
          Length = 64

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV
Sbjct: 17  IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64


>gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo
           sapiens]
          Length = 64

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV
Sbjct: 17  IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64


>gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo
           sapiens]
          Length = 64

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV
Sbjct: 17  IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64


>gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit II
           [Homo sapiens]
          Length = 64

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 32/48 (66%), Positives = 38/48 (79%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + +TFHDH L+I+FLISSLVLY ISLIL   LT+ S I AQEIETV
Sbjct: 17  IEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64


>gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo
           sapiens]
          Length = 64

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 32/48 (66%), Positives = 38/48 (79%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + +TFHDH L+I+FLISSLVLY ISLIL   LT+ S I AQEIETV
Sbjct: 17  IEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64


>gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo
           sapiens]
          Length = 64

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 32/48 (66%), Positives = 38/48 (79%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + +TFHDH L+I+FLISSLVLY ISLIL   LT+ S I AQEIETV
Sbjct: 17  IEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64


>gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 70

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 31/44 (70%), Positives = 37/44 (84%), Gaps = 3/44 (6%)

Query: 374 FHDHTLVIVFLISSLVLYVISLILTI---KLTNNSTIDAQEIET 414
           FH HTL+I+FLISSLV Y+ISLILTI   KLT+ ST+D QE+ET
Sbjct: 26  FHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69


>gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit II
           [Homo sapiens]
          Length = 63

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 30/48 (62%), Positives = 36/48 (75%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + I FHDH L+I+FLIS LVLYV+ L LT KL N S  DAQE+ETV
Sbjct: 9   IEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo
           sapiens]
          Length = 63

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 30/48 (62%), Positives = 36/48 (75%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + I FHDH L+I+FLIS LVLYV+ L LT KL N S  DAQE+ETV
Sbjct: 9   IEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo
           sapiens]
          Length = 63

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 30/48 (62%), Positives = 36/48 (75%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + I FHDH L+I+FLIS LVLYV+ L LT KL N S  DAQE+ETV
Sbjct: 9   IEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]
          Length = 227

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 29/48 (60%), Positives = 36/48 (75%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + ITFHDH L+I+FLI  LVLY + L LT KLTN +  DAQE+ETV
Sbjct: 17  MEELITFHDHALMIIFLICFLVLYALFLTLTTKLTNTNISDAQEMETV 64


>gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit 2
           [Homo sapiens]
          Length = 64

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 29/48 (60%), Positives = 34/48 (70%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + I FHDH L+I+FLI  LVLY + L LT KLTN S  D QEIETV
Sbjct: 17  IEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQEIETV 64


>gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo
           sapiens]
          Length = 64

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 29/48 (60%), Positives = 34/48 (70%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + I FHDH L+I+FLI  LVLY + L LT KLTN S  D QEIETV
Sbjct: 17  IEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQEIETV 64


>gi|196123582 cytochrome c oxidase subunit II [Homo sapiens
           neanderthalensis]
          Length = 227

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 29/48 (60%), Positives = 35/48 (72%)

Query: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
           + + I FHDH L+I+FLI  LVLY + L LT KLTN S  DAQE+ETV
Sbjct: 17  MEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 86/312 (27%), Positives = 115/312 (36%), Gaps = 67/312 (21%)

Query: 67  GGSPGLEAAGSPLPAGAQPCGR--PRSGGIGDPVLRTPGPLSAQGRTPAVQDAPRCLGAP 124
           G SP +    SP P  A+P  R  P +   G P    P P S     P +   P  L  P
Sbjct: 129 GASPQMFHTVSPGPPSARPPCRVPPTTPLNGGPGSLPPEPPSVSQAFPTLA-GPGGLFPP 187

Query: 125 RSEHP----GRSAP--LQRSSSYTLFAPQLPGTVL-APC----SSKRLSLMPGNLGCGTG 173
           R   P    G S+P  L R ++ +   P  P   L AP     ++ R SL+P +LG    
Sbjct: 188 RLADPVPSGGSSSPRFLPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPSDLGSPPA 247

Query: 174 GWAASSIVSHNYLF-----------PVGSSLISSSNPETQLHSSS---HLPAA-GPSGPQ 218
             A+SS  S   LF           P  ++L +   P +Q   SS   HLP   GP G  
Sbjct: 248 PHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHPGPASQPPVSSATMHLPLVLGPLGGA 307

Query: 219 GPLGYPGPPGVKDSKPMICIALALDHHTLYTPQAPSPATATGIRQ-------PHSASLVP 271
             +  PG P      P +  +L         P  P P+T  G R         HS+SL P
Sbjct: 308 PTVEGPGAP------PFLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRP 361

Query: 272 LS-------------------------PLGPDLIPRPPRLPLPLSHSWASWVFLVCLATP 306
                                      P  P  +P+P  LP P      S + L+ L TP
Sbjct: 362 SQRRPRRPPTVFRLLEGRGPQTPRRSRPRAPAPVPQPFSLPEPSQPILPSVLSLLGLPTP 421

Query: 307 DARNSGDSWDFL 318
              +S  S++ L
Sbjct: 422 GPSHSDGSFNLL 433



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 82/298 (27%), Positives = 100/298 (33%), Gaps = 67/298 (22%)

Query: 72  LEAAGSPLPAGAQPCGRPRSGGIGDPVLRTPGPLSA----QGRTPAVQDAPRCLGAPRSE 127
           L   G P P  +   G     G  D  L  P  LS+    Q R P     P       S 
Sbjct: 413 LSLLGLPTPGPSHSDGSFNLLG-SDAHLPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSS 471

Query: 128 HPGRSAPLQRSSSYTLFAPQLPGTVLAPCSSKRLSLMPGNLGCGTGGWAASSIVSHNYLF 187
            PG  AP   S      AP +P  VL   S          LG G G       ++    F
Sbjct: 472 VPGAPAPPAASK-----APVVPSPVLQSPSE--------GLGMGAGPACPLPPLAGGEAF 518

Query: 188 PVGSSLISSSNPETQLHSSSHLPAAGPSGPQGPLGYPGPPGVKDSKPMICIAL------- 240
           P  S       PE  L     L  AG  G  G L  P   G     P++  +L       
Sbjct: 519 PFPS-------PEQGLA----LSGAGFPGMLGALPLPLSLGQPPPSPLLNHSLFGVLTGG 567

Query: 241 ---ALDHHTLYTPQAPSPATATGIRQPHSASLVPLSPLGP---DLIPRPPRLPLPLSHSW 294
                    L  P  P P  A G  +P   SL+  S L P   DL+P P     P S+  
Sbjct: 568 GGQPPPEPLLPPPGGPGPPLAPG--EPEGPSLLVASLLPPPPSDLLPPP---SAPPSNLL 622

Query: 295 ASWVFLVCLATPDARNSGDSWDFLAFLESVGRTEPEEAGDREKGPQSAP-GGIGNLGP 351
           AS++ L+ L       +GD           G    E AG    GP   P  G+G+L P
Sbjct: 623 ASFLPLLALGP----TAGD-----------GEGSAEGAG----GPSGEPFSGLGDLSP 661


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,360,254
Number of Sequences: 37866
Number of extensions: 1392193
Number of successful extensions: 18595
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 460
Number of HSP's that attempted gapping in prelim test: 7550
Number of HSP's gapped (non-prelim): 8482
length of query: 415
length of database: 18,247,518
effective HSP length: 105
effective length of query: 310
effective length of database: 14,271,588
effective search space: 4424192280
effective search space used: 4424192280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.