Guide to the Human Genome
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Name: LOC100288304 Sequence: fasta or formatted (63aa) NCBI GI: 239742454
Description:

PREDICTED: hypothetical protein XP_002342519

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3          4           1
 C cysteine            0.0          0           0
 D aspartate           3.2          2           1
 E glutamate           6.3          4           2
 F phenylalanine       6.3          4           1
 G glycine             0.0          0           0
 H histidine           3.2          2           1
 I isoleucine         17.5         11           3
 K lysine              4.8          3           1
 L leucine            15.9         10           1
 M methionine          3.2          2           1
 N asparagine          3.2          2           1
 P proline             1.6          1           1
 Q glutamine           3.2          2           1
 R arginine            3.2          2           2
 S serine              4.8          3           1
 T threonine          11.1          7           2
 V valine              4.8          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342519 
LOC100293197          1.000   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290105          1.000   PREDICTED: hypothetical protein XP_002346674 
COX2                  0.684   cytochrome c oxidase subunit II 
COX2                  0.674   cytochrome c oxidase subunit II 
LOC100292744          0.674   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100289404          0.674   PREDICTED: hypothetical protein XP_002342601 
LOC100291934          0.568   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100291321          0.568   PREDICTED: hypothetical protein XP_002347169 
LOC100287996          0.568   PREDICTED: hypothetical protein XP_002343062 
LOC100292806          0.516   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100289854          0.516   PREDICTED: hypothetical protein XP_002346519 
LOC100288334          0.516   PREDICTED: hypothetical protein XP_002342327 
LOC100293518          0.516   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100291549          0.516   PREDICTED: hypothetical protein XP_002347252 
LOC100289139          0.516   PREDICTED: hypothetical protein XP_002343117 
LOC100292899          0.442   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100292526          0.442   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100290942          0.442   PREDICTED: hypothetical protein XP_002346731 
LOC100287564          0.442   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100289160          0.442   PREDICTED: hypothetical protein XP_002342599 
LOC100287564          0.442   PREDICTED: hypothetical protein XP_002342515 
LOC100291986          0.432   PREDICTED: hypothetical protein XP_002345402 
LOC100290244          0.432   PREDICTED: hypothetical protein XP_002346644 
LOC100287317          0.432   PREDICTED: hypothetical protein XP_002342139 
LOC100291574          0.389   PREDICTED: hypothetical protein XP_002345618 
LOC730037             0.389   PREDICTED: hypothetical protein 
LOC100287418          0.389   PREDICTED: hypothetical protein XP_002342289 
LOC100293872          0.295   PREDICTED: hypothetical protein 
SLC39A9               0.011   solute carrier family 39 (zinc transporter), member ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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