Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292744 Sequence: fasta or formatted (64aa) NCBI GI: 239754134
Description:

PREDICTED: similar to Cytochrome c oxidase subunit 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4          6           2
 C cysteine            1.6          1           1
 D aspartate           4.7          3           1
 E glutamate           6.2          4           2
 F phenylalanine       6.2          4           1
 G glycine             1.6          1           1
 H histidine           4.7          3           1
 I isoleucine         15.6         10           3
 K lysine              1.6          1           1
 L leucine            15.6         10           1
 M methionine          1.6          1           1
 N asparagine          1.6          1           1
 P proline             1.6          1           1
 Q glutamine           4.7          3           1
 R arginine            0.0          0           0
 S serine              4.7          3           1
 T threonine          10.9          7           2
 V valine              6.2          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Cytochrome c oxidase subunit ... 
LOC100289404          1.000   PREDICTED: hypothetical protein XP_002342601 
COX2                  0.950   cytochrome c oxidase subunit II 
COX2                  0.920   cytochrome c oxidase subunit II 
LOC100291934          0.660   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100291321          0.660   PREDICTED: hypothetical protein XP_002347169 
LOC100287996          0.660   PREDICTED: hypothetical protein XP_002343062 
LOC100293197          0.640   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290105          0.640   PREDICTED: hypothetical protein XP_002346674 
LOC100288304          0.640   PREDICTED: hypothetical protein XP_002342519 
LOC100293518          0.640   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100291549          0.640   PREDICTED: hypothetical protein XP_002347252 
LOC100289139          0.640   PREDICTED: hypothetical protein XP_002343117 
LOC100292806          0.610   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100289854          0.610   PREDICTED: hypothetical protein XP_002346519 
LOC100288334          0.610   PREDICTED: hypothetical protein XP_002342327 
LOC100292899          0.590   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100290942          0.590   PREDICTED: hypothetical protein XP_002346731 
LOC100289160          0.590   PREDICTED: hypothetical protein XP_002342599 
LOC100292526          0.580   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100287564          0.580   PREDICTED: similar to Cytochrome c oxidase subunit ...
LOC100287564          0.580   PREDICTED: hypothetical protein XP_002342515 
LOC100291986          0.390   PREDICTED: hypothetical protein XP_002345402 
LOC100290244          0.390   PREDICTED: hypothetical protein XP_002346644 
LOC100287317          0.390   PREDICTED: hypothetical protein XP_002342139 
LOC100291574          0.340   PREDICTED: hypothetical protein XP_002345618 
LOC730037             0.340   PREDICTED: hypothetical protein 
LOC100287418          0.340   PREDICTED: hypothetical protein XP_002342289 
LOC100293872          0.280   PREDICTED: hypothetical protein 
ADCY1                 0.010   adenylate cyclase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press