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Search of human proteins with 239751968
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751968 PREDICTED: hypothetical protein XP_002348050 [Homo
sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757451 PREDICTED: similar to hCG1812873 [Homo sapiens] 239 4e-64
gi|239751968 PREDICTED: hypothetical protein XP_002348050 [Homo ... 239 4e-64
gi|239746450 PREDICTED: hypothetical protein XP_002344213 [Homo ... 239 4e-64
gi|7019493 DNA-directed DNA polymerase mu [Homo sapiens] 28 1.6
gi|239753565 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239748093 PREDICTED: hypothetical protein XP_002346551 [Homo ... 28 2.0
gi|239741989 PREDICTED: hypothetical protein XP_002342387 [Homo ... 28 2.0
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 27 4.5
gi|14780904 kelch-like 1 protein [Homo sapiens] 27 4.5
gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens] 27 4.5
gi|117168250 phospholipase C, epsilon 1 [Homo sapiens] 26 5.9
gi|239754965 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|239749521 PREDICTED: hypothetical protein XP_002347072 [Homo ... 26 7.7
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ... 26 7.7
gi|27735143 discoidin, CUB and LCCL domain containing 1 [Homo sa... 26 7.7
>gi|239757451 PREDICTED: similar to hCG1812873 [Homo sapiens]
Length = 116
Score = 239 bits (609), Expect = 4e-64
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60
MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW
Sbjct: 1 MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60
Query: 61 VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116
VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG
Sbjct: 61 VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116
>gi|239751968 PREDICTED: hypothetical protein XP_002348050 [Homo
sapiens]
Length = 116
Score = 239 bits (609), Expect = 4e-64
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60
MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW
Sbjct: 1 MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60
Query: 61 VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116
VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG
Sbjct: 61 VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116
>gi|239746450 PREDICTED: hypothetical protein XP_002344213 [Homo
sapiens]
Length = 116
Score = 239 bits (609), Expect = 4e-64
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60
MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW
Sbjct: 1 MPGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGPLSSGWIGLRVSLKSRGRGLW 60
Query: 61 VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116
VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG
Sbjct: 61 VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGGAQDQQQGMLLNPYLTG 116
>gi|7019493 DNA-directed DNA polymerase mu [Homo sapiens]
Length = 494
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 2 PGEATPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCG---GPLSSGWI 46
PG PA+ I +S+ A +PV +C L V G GPLS W+
Sbjct: 92 PGCTPPALLDISWLTESLGAGQPVPVEC-RHRLEVAGPRKGPLSPAWM 138
>gi|239753565 PREDICTED: hypothetical protein [Homo sapiens]
Length = 135
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 40 PLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQNPSSTW 82
P W+G R RG W++LGP + LG ++ +W
Sbjct: 85 PRRGPWLGWRSD--HRGGRSWLLLGPLRGLGTAAGSERAKRSW 125
>gi|239748093 PREDICTED: hypothetical protein XP_002346551 [Homo
sapiens]
Length = 135
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 40 PLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQNPSSTW 82
P W+G R RG W++LGP + LG ++ +W
Sbjct: 85 PRRGPWLGWRSD--HRGGRSWLLLGPLRGLGTAAGSERAKRSW 125
>gi|239741989 PREDICTED: hypothetical protein XP_002342387 [Homo
sapiens]
Length = 135
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 40 PLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQNPSSTW 82
P W+G R RG W++LGP + LG ++ +W
Sbjct: 85 PRRGPWLGWRSD--HRGGRSWLLLGPLRGLGTAAGSERAKRSW 125
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 37 CGGPLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKP 96
C W G R G G W G + GL Q TWA G A +
Sbjct: 1250 CDETSVKSWAGARAE-NVVGIGTWARAGEQASGGLWAGGQTSEGTWAGDKASGGAWT--- 1305
Query: 97 SQGGAQDQQQG 107
GA++Q G
Sbjct: 1306 ---GAENQASG 1313
>gi|14780904 kelch-like 1 protein [Homo sapiens]
Length = 748
Score = 26.6 bits (57), Expect = 4.5
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 35 PVCGGPLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQNPSST-WAALSFHGSALS 93
P GGP G L+ G G + GPS++ L Q ++ ST W S S+ S
Sbjct: 27 PSTGGPAGGG------CLQQDGSGSFEHWGPSQSRLLKSQERSGVSTFWKKPSSSSSSSS 80
Query: 94 EKPSQGGAQDQQQGMLL 110
S + + G LL
Sbjct: 81 SPSSSSSSFNPLNGTLL 97
>gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]
Length = 880
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 61 VVLGPSKALGLMDQNQNPSSTWAALSFHGSALSEKPSQGG 100
V GP G + Q+ T A+LS G+ + + P QGG
Sbjct: 685 VTPGPGSLKGKLGARQSGPRTKASLSAKGTHMRKVPPQGG 724
>gi|117168250 phospholipase C, epsilon 1 [Homo sapiens]
Length = 2302
Score = 26.2 bits (56), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 71 LMDQNQNPSSTWAALSFHG 89
L N++PSS W++ S+HG
Sbjct: 1176 LSSSNKSPSSAWSSSSWHG 1194
>gi|239754965 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 1 MPGEA--TPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGP 40
+PGEA P+++ Q ++ AD PVS P Q L GGP
Sbjct: 37 LPGEAGQDPSLKPSQGGT-ALLADPPVSDFRPPQLLTCLGGP 77
>gi|239749521 PREDICTED: hypothetical protein XP_002347072 [Homo
sapiens]
Length = 184
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 1 MPGEA--TPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGP 40
+PGEA P+++ Q ++ AD PVS P Q L GGP
Sbjct: 37 LPGEAGQDPSLKPSQGGT-ALLADPPVSDFRPPQLLTCLGGP 77
>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
sapiens]
Length = 329
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 1 MPGEA--TPAVRRIQRSLDSVTADKPVSTDCPTQTLPVCGGP 40
+PGEA P+++ Q ++ AD PVS P Q L GGP
Sbjct: 37 LPGEAGQDPSLKPSQGGT-ALLADPPVSDFRPPQLLTCLGGP 77
>gi|27735143 discoidin, CUB and LCCL domain containing 1 [Homo
sapiens]
Length = 539
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 39 GPLSSGWIGLRVSLKSRGRGLWVVLGPSKALGLMDQNQ-NPSSTWAALSFHGSALSEKPS 97
G L++G + SL + R L+ G S++L Q SS+W +++ G + P
Sbjct: 230 GILANGVLSRDGSLSDK-RFLFTSNGCSRSLSFEPDGQIRASSSWQSVNESGDQVHWSPG 288
Query: 98 QGGAQDQ 104
Q QDQ
Sbjct: 289 QARLQDQ 295
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,071,613
Number of Sequences: 37866
Number of extensions: 219164
Number of successful extensions: 386
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 15
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.