Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239751938
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751938 PREDICTED: hypothetical protein XP_002348045
isoform 2 [Homo sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757423 PREDICTED: hypothetical protein XP_002345427 isofor... 322 1e-88
gi|239757421 PREDICTED: hypothetical protein XP_002345428 isofor... 322 1e-88
gi|239751940 PREDICTED: hypothetical protein XP_002348044 isofor... 322 1e-88
gi|239751938 PREDICTED: hypothetical protein XP_002348045 isofor... 322 1e-88
gi|239746423 PREDICTED: hypothetical protein XP_002344208 isofor... 322 1e-88
gi|239746421 PREDICTED: hypothetical protein XP_002344209 isofor... 322 1e-88
gi|5031829 kallikrein 2, prostatic isoform 1 [Homo sapiens] 30 1.0
gi|50363237 kallikrein 2, prostatic isoform 2 [Homo sapiens] 30 1.0
gi|32455271 protein-O-mannosyltransferase 2 [Homo sapiens] 29 1.4
gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens] 29 1.4
gi|61966731 transmembrane protein 82 [Homo sapiens] 29 1.4
gi|32698704 tectonin beta-propeller repeat containing 1 [Homo sa... 28 3.0
gi|211904140 DAZ associated protein 2 isoform c [Homo sapiens] 28 3.0
gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens] 28 3.0
gi|4557669 interleukin 4 receptor alpha chain isoform a precurso... 28 3.9
gi|157074214 potassium channel, subfamily U, member 1 [Homo sapi... 28 3.9
gi|13128976 Yip1 domain family, member 2 [Homo sapiens] 27 5.1
gi|222080107 solute carrier family 23 (nucleobase transporters),... 27 6.7
gi|222080105 solute carrier family 23 (nucleobase transporters),... 27 6.7
gi|158635944 solute carrier family 23 (nucleobase transporters),... 27 6.7
gi|239753530 PREDICTED: hypothetical protein [Homo sapiens] 27 6.7
gi|239742029 PREDICTED: hypothetical protein XP_002342375 [Homo ... 27 6.7
gi|4507033 solute carrier family 5 (sodium/glucose cotransporter... 27 8.8
>gi|239757423 PREDICTED: hypothetical protein XP_002345427 isoform 1
[Homo sapiens]
Length = 195
Score = 322 bits (824), Expect = 1e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR
Sbjct: 44 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 103
Query: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF
Sbjct: 104 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 163
Query: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ
Sbjct: 164 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 195
>gi|239757421 PREDICTED: hypothetical protein XP_002345428 isoform 2
[Homo sapiens]
Length = 152
Score = 322 bits (824), Expect = 1e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR
Sbjct: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
Query: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF
Sbjct: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
Query: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ
Sbjct: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
>gi|239751940 PREDICTED: hypothetical protein XP_002348044 isoform 1
[Homo sapiens]
Length = 195
Score = 322 bits (824), Expect = 1e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR
Sbjct: 44 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 103
Query: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF
Sbjct: 104 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 163
Query: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ
Sbjct: 164 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 195
>gi|239751938 PREDICTED: hypothetical protein XP_002348045 isoform 2
[Homo sapiens]
Length = 152
Score = 322 bits (824), Expect = 1e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR
Sbjct: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
Query: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF
Sbjct: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
Query: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ
Sbjct: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
>gi|239746423 PREDICTED: hypothetical protein XP_002344208 isoform 1
[Homo sapiens]
Length = 195
Score = 322 bits (824), Expect = 1e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR
Sbjct: 44 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 103
Query: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF
Sbjct: 104 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 163
Query: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ
Sbjct: 164 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 195
>gi|239746421 PREDICTED: hypothetical protein XP_002344209 isoform 2
[Homo sapiens]
Length = 152
Score = 322 bits (824), Expect = 1e-88
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR
Sbjct: 1 MMQQPRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWIQWWSTSNWRQPLQR 60
Query: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF
Sbjct: 61 LLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPALLF 120
Query: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ
Sbjct: 121 TASFLLLFSTLLSLVGLLTSMTHPGDTQDLDQ 152
>gi|5031829 kallikrein 2, prostatic isoform 1 [Homo sapiens]
Length = 261
Score = 29.6 bits (65), Expect = 1.0
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 5 PRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWI 46
P +++ +G E + + PW V HGW + P W+
Sbjct: 19 PLIQSRIVGGWECEKHSQPWQVAVYSHGWAHCGGVLVHPQWV 60
>gi|50363237 kallikrein 2, prostatic isoform 2 [Homo sapiens]
Length = 223
Score = 29.6 bits (65), Expect = 1.0
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 5 PRVETDTIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWI 46
P +++ +G E + + PW V HGW + P W+
Sbjct: 19 PLIQSRIVGGWECEKHSQPWQVAVYSHGWAHCGGVLVHPQWV 60
>gi|32455271 protein-O-mannosyltransferase 2 [Homo sapiens]
Length = 750
Score = 29.3 bits (64), Expect = 1.4
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 48 WWSTSNWRQPLQRLLWGLEGILYLLLALMLCHALFTTGS--HLLSSLWPVVAAVWRHLLP 105
WW W L G G+ ++ L ++L L T +L L + V +HL
Sbjct: 225 WWF---WLSLTGVSLAGALGVKFVGLFIILQVGLNTIADLWYLFGDLSLSLVTVGKHLTA 281
Query: 106 ALLLLVLSALPALLFTASFLLLFSTLLSLVGLLTSMTHPGD 146
+L L++ LP L+TA+F + F L S + PGD
Sbjct: 282 RVLCLIV--LPLALYTATFAVHFMVL--------SKSGPGD 312
>gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens]
Length = 4265
Score = 29.3 bits (64), Expect = 1.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 11 TIGAGEGPQQAVPWSAWVTRHGWVRWWVSHMPPSWI 46
++G G+GP+ + + R WV + H+ PSW+
Sbjct: 3704 SLGQGQGPRAEAMMRSSIERGKWVFFQNCHLAPSWM 3739
>gi|61966731 transmembrane protein 82 [Homo sapiens]
Length = 343
Score = 29.3 bits (64), Expect = 1.4
Identities = 31/103 (30%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Query: 43 PSWIQWWSTSNWRQPL-QRLLWGLEGILYLLLALMLCHALFTTG----------SHLLSS 91
PSW+ + W L LL GL G L +L+ L F G L +
Sbjct: 8 PSWLPGLPSLEWGSSLLDSLLQGLIGALGVLVLNSLLKVYFFVGCANDPQRRPEKERLRA 67
Query: 92 LWPVVAAVWRHLLPALLLLVLSALPALLFTASFLLLFSTLLSL 134
W + V L L +V S + AL+ L STLLSL
Sbjct: 68 QWASLETVHLAGLALFLTVVGSRVAALVVLEFSLRAVSTLLSL 110
>gi|32698704 tectonin beta-propeller repeat containing 1 [Homo
sapiens]
Length = 1165
Score = 28.1 bits (61), Expect = 3.0
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 19 QQAVPWSAWVTRHGWVRWWVSHMPPSWI 46
+QAV S WV + G ++WW P W+
Sbjct: 601 EQAVEQSVWV-KTGALQWWCDWKPHKWV 627
>gi|211904140 DAZ associated protein 2 isoform c [Homo sapiens]
Length = 207
Score = 28.1 bits (61), Expect = 3.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 31 HGWVRWWVSHM 41
HGW RWW+ H+
Sbjct: 132 HGWFRWWLHHL 142
>gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens]
Length = 630
Score = 28.1 bits (61), Expect = 3.0
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 95 VVAAVWRHLLPA--LLLLVLSALPALLFTASFLLLFSTLLSLVGLLTSMTHPG 145
V A+ W LP L LL LS L L F A FLL S+ L + L PG
Sbjct: 10 VPASPWGLRLPQKFLFLLFLSGLVTLCFGALFLLPHSSRLKRLFLAPRTQQPG 62
>gi|4557669 interleukin 4 receptor alpha chain isoform a precursor
[Homo sapiens]
Length = 825
Score = 27.7 bits (60), Expect = 3.9
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 34 VRWWVSHMPPSWIQWWSTSNW----RQPL-QRLLWGLEGILYLLLAL-MLCHALFT 83
VR W +W +W ++ W R+P Q LL G+ ++LA+ +LC+ T
Sbjct: 201 VRAWAQCYNTTWSEWSPSTKWHNSYREPFEQHLLLGVSVSCIVILAVCLLCYVSIT 256
>gi|157074214 potassium channel, subfamily U, member 1 [Homo
sapiens]
Length = 1149
Score = 27.7 bits (60), Expect = 3.9
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 41 MPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVW 100
+PP++I ++ SNW R L L +L L L + A+ T+ S S L ++ + W
Sbjct: 179 IPPTFISYYLKSNWLG--LRFLRALR-LLELPQILQILRAIKTSNSVKFSKLLSIILSTW 235
Query: 101 RHLLPALLLLVLSALPALLFTASFLLLFSTLLSLVGLLTSMTHPGD 146
+ L+ S P L S + + + LV TS GD
Sbjct: 236 FTAAGFIHLVENSGDPWLKGRNSQNISYFESIYLVMATTSTVGFGD 281
>gi|13128976 Yip1 domain family, member 2 [Homo sapiens]
Length = 316
Score = 27.3 bits (59), Expect = 5.1
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 54 WRQPLQRLLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLS 113
W P+ L W L+ LAL L + + L+ +LWPVV R L+ +LL V+
Sbjct: 220 WLIPVPWLQW-----LFGALALGL------SAAGLVFTLWPVVREDTR-LVATVLLSVVV 267
Query: 114 ALPALLFTASFLLLFSTL 131
L ALL L F +L
Sbjct: 268 LLHALLAMGCKLYFFQSL 285
>gi|222080107 solute carrier family 23 (nucleobase transporters),
member 3 isoform 3 [Homo sapiens]
Length = 618
Score = 26.9 bits (58), Expect = 6.7
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 41 MPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALMLCHALFTTGSHLLSSLWP 94
+PP Q ST +W L WGL +L L L++ L + LL SL P
Sbjct: 23 LPPPAPQNPSTHSWDPLCGSLPWGLSCLLALQHVLVMASLLCVSHLLLLCSLSP 76
>gi|222080105 solute carrier family 23 (nucleobase transporters),
member 3 isoform 2 [Homo sapiens]
Length = 610
Score = 26.9 bits (58), Expect = 6.7
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 41 MPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALMLCHALFTTGSHLLSSLWP 94
+PP Q ST +W L WGL +L L L++ L + LL SL P
Sbjct: 23 LPPPAPQNPSTHSWDPLCGSLPWGLSCLLALQHVLVMASLLCVSHLLLLCSLSP 76
>gi|158635944 solute carrier family 23 (nucleobase transporters),
member 3 isoform 1 [Homo sapiens]
Length = 493
Score = 26.9 bits (58), Expect = 6.7
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 41 MPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALMLCHALFTTGSHLLSSLWP 94
+PP Q ST +W L WGL +L L L++ L + LL SL P
Sbjct: 23 LPPPAPQNPSTHSWDPLCGSLPWGLSCLLALQHVLVMASLLCVSHLLLLCSLSP 76
>gi|239753530 PREDICTED: hypothetical protein [Homo sapiens]
Length = 340
Score = 26.9 bits (58), Expect = 6.7
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 37 WVSHMPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVV 96
W+ P + + + S RQ +R+ ++G C TTGS+ + LWP
Sbjct: 236 WLETAPATMVSSFQASPIRQAEERVHLSVQGTS--------CRMHPTTGSYSTTELWPRA 287
Query: 97 AAVW 100
A++
Sbjct: 288 KAIF 291
>gi|239742029 PREDICTED: hypothetical protein XP_002342375 [Homo
sapiens]
Length = 340
Score = 26.9 bits (58), Expect = 6.7
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 37 WVSHMPPSWIQWWSTSNWRQPLQRLLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVV 96
W+ P + + + S RQ +R+ ++G C TTGS+ + LWP
Sbjct: 236 WLETAPATMVSSFQASPIRQAEERVHLSVQGTS--------CRMHPTTGSYSTTELWPRA 287
Query: 97 AAVW 100
A++
Sbjct: 288 KAIF 291
>gi|4507033 solute carrier family 5 (sodium/glucose cotransporter),
member 2 [Homo sapiens]
Length = 672
Score = 26.6 bits (57), Expect = 8.8
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 59 QRLLWGLEGILYLLLALMLCHALFTTGSHLLSSLWPVVAAVWRHLLPALLLLVLSALPAL 118
Q WGL G L + LA ++ F +GS + S P +L A++L S L L
Sbjct: 483 QGAFWGLIGGLLMGLARLIPEFSFGSGSCVQPSACPAFLCGVHYLYFAIVLFFCSGL--L 540
Query: 119 LFTASFLLLFSTLLSLVGLLTSMTH-PGDTQDLD 151
T S L L+ S+ H + +DLD
Sbjct: 541 TLTVSLCTAPIPRKHLHRLVFSLRHSKEEREDLD 574
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.136 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,532,247
Number of Sequences: 37866
Number of extensions: 274736
Number of successful extensions: 976
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 24
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.