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Search of human proteins with 118582251
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118582251 URG7 protein isoform 2 [Homo sapiens]
(99 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118582251 URG7 protein isoform 2 [Homo sapiens] 213 3e-56
gi|190343023 ATP-binding cassette, sub-family C, member 6 isofor... 162 7e-41
gi|134142345 ATP-binding cassette, sub-family C, member 1 isofor... 57 2e-09
gi|134142342 ATP-binding cassette, sub-family C, member 1 isofor... 57 2e-09
gi|134142340 ATP-binding cassette, sub-family C, member 1 isofor... 57 2e-09
gi|134142335 ATP-binding cassette, sub-family C, member 1 isofor... 57 2e-09
gi|134142337 ATP-binding cassette, sub-family C, member 1 isofor... 57 2e-09
gi|221316556 ATP-binding cassette, sub-family C, member 3 isofor... 57 4e-09
gi|9955970 ATP-binding cassette, sub-family C, member 3 isoform ... 57 4e-09
gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member... 37 0.004
gi|219282705 hypothetical FLJ23584 [Homo sapiens] 27 2.7
gi|24308382 leukocyte receptor cluster member 8 [Homo sapiens] 27 3.5
gi|156151445 acyl-CoA synthetase family member 2 [Homo sapiens] 27 3.5
gi|53828683 olfactory receptor, family 52, subfamily B, member 2... 26 7.8
>gi|118582251 URG7 protein isoform 2 [Homo sapiens]
Length = 99
Score = 213 bits (542), Expect = 3e-56
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MAAPAEPCAGQGVWNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGR 60
MAAPAEPCAGQGVWNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGR
Sbjct: 1 MAAPAEPCAGQGVWNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGR 60
Query: 61 GYLRMSPLFKAKMVAAIPGSLEPGNVRGRQGTGWNLVKS 99
GYLRMSPLFKAKMVAAIPGSLEPGNVRGRQGTGWNLVKS
Sbjct: 61 GYLRMSPLFKAKMVAAIPGSLEPGNVRGRQGTGWNLVKS 99
>gi|190343023 ATP-binding cassette, sub-family C, member 6 isoform
1 [Homo sapiens]
Length = 1503
Score = 162 bits (409), Expect = 7e-41
Identities = 74/74 (100%), Positives = 74/74 (100%)
Query: 1 MAAPAEPCAGQGVWNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGR 60
MAAPAEPCAGQGVWNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGR
Sbjct: 1 MAAPAEPCAGQGVWNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGR 60
Query: 61 GYLRMSPLFKAKMV 74
GYLRMSPLFKAKMV
Sbjct: 61 GYLRMSPLFKAKMV 74
>gi|134142345 ATP-binding cassette, sub-family C, member 1 isoform
3 [Homo sapiens]
Length = 1475
Score = 57.4 bits (137), Expect = 2e-09
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 14 WNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGRGYLRMSPLFKAK 72
WN + P+ + CF T VWVP YLW P Y L++ H RGY++M+PL K K
Sbjct: 22 WNTSNPD------FTKCFQNTVLVWVPCFYLWACFPFYFLYLSRHDRGYIQMTPLNKTK 74
>gi|134142342 ATP-binding cassette, sub-family C, member 1 isoform
4 [Homo sapiens]
Length = 1416
Score = 57.4 bits (137), Expect = 2e-09
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 14 WNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGRGYLRMSPLFKAK 72
WN + P+ + CF T VWVP YLW P Y L++ H RGY++M+PL K K
Sbjct: 22 WNTSNPD------FTKCFQNTVLVWVPCFYLWACFPFYFLYLSRHDRGYIQMTPLNKTK 74
>gi|134142340 ATP-binding cassette, sub-family C, member 1 isoform
2 [Homo sapiens]
Length = 1472
Score = 57.4 bits (137), Expect = 2e-09
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 14 WNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGRGYLRMSPLFKAK 72
WN + P+ + CF T VWVP YLW P Y L++ H RGY++M+PL K K
Sbjct: 22 WNTSNPD------FTKCFQNTVLVWVPCFYLWACFPFYFLYLSRHDRGYIQMTPLNKTK 74
>gi|134142335 ATP-binding cassette, sub-family C, member 1 isoform
5 [Homo sapiens]
Length = 1466
Score = 57.4 bits (137), Expect = 2e-09
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 14 WNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGRGYLRMSPLFKAK 72
WN + P+ + CF T VWVP YLW P Y L++ H RGY++M+PL K K
Sbjct: 22 WNTSNPD------FTKCFQNTVLVWVPCFYLWACFPFYFLYLSRHDRGYIQMTPLNKTK 74
>gi|134142337 ATP-binding cassette, sub-family C, member 1 isoform
1 [Homo sapiens]
Length = 1531
Score = 57.4 bits (137), Expect = 2e-09
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 14 WNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGRGYLRMSPLFKAK 72
WN + P+ + CF T VWVP YLW P Y L++ H RGY++M+PL K K
Sbjct: 22 WNTSNPD------FTKCFQNTVLVWVPCFYLWACFPFYFLYLSRHDRGYIQMTPLNKTK 74
>gi|221316556 ATP-binding cassette, sub-family C, member 3 isoform
2 [Homo sapiens]
Length = 572
Score = 56.6 bits (135), Expect = 4e-09
Identities = 27/68 (39%), Positives = 36/68 (52%)
Query: 10 GQGVWNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGRGYLRMSPLF 69
G W+ L+ CF + WVP +YLWV P YLL++ HH RGY+ +S L
Sbjct: 11 GSKFWDSNLSVHTENPDLTPCFQNSLLAWVPCIYLWVALPCYLLYLRHHCRGYIILSHLS 70
Query: 70 KAKMVAAI 77
K KMV +
Sbjct: 71 KLKMVLGV 78
>gi|9955970 ATP-binding cassette, sub-family C, member 3 isoform 1
[Homo sapiens]
Length = 1527
Score = 56.6 bits (135), Expect = 4e-09
Identities = 27/68 (39%), Positives = 36/68 (52%)
Query: 10 GQGVWNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGRGYLRMSPLF 69
G W+ L+ CF + WVP +YLWV P YLL++ HH RGY+ +S L
Sbjct: 11 GSKFWDSNLSVHTENPDLTPCFQNSLLAWVPCIYLWVALPCYLLYLRHHCRGYIILSHLS 70
Query: 70 KAKMVAAI 77
K KMV +
Sbjct: 71 KLKMVLGV 78
>gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member
2 [Homo sapiens]
Length = 1545
Score = 36.6 bits (83), Expect = 0.004
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 27 LSLCFLRTAGVWVPPMYLWVLGPIYLLFIHHHGRGYLRMSPLFKAKMV 74
L LCF +T VW+P +LW+L P LL ++ + L+ AK V
Sbjct: 23 LPLCFEQTVLVWIPLGFLWLLAPWQLLHVYKSRTKRSSTTKLYLAKQV 70
>gi|219282705 hypothetical FLJ23584 [Homo sapiens]
Length = 243
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 1 MAAPAEPCAG--QGVWNQTEPEPAATSLLSLCFLRTAGVWVPPMYLWVL 47
+ +P PC G GV +EP TS+ + C L W W L
Sbjct: 129 LLSPQHPCPGPPSGVHTHSEPIFCTTSISNTCLLPQNSSWKAWQVPWCL 177
>gi|24308382 leukocyte receptor cluster member 8 [Homo sapiens]
Length = 800
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 4 PAEPCAGQGVWNQTEPEPAATSL 26
PA+P GQ +WN+ +P P L
Sbjct: 212 PAKPKKGQQLWNRMKPAPGTGGL 234
>gi|156151445 acyl-CoA synthetase family member 2 [Homo sapiens]
Length = 615
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 18 EPEPAATSLLS--LCFLRTAGVWVPPMYLWVL 47
E + AA+ LLS LC G+W P Y WVL
Sbjct: 108 EVDKAASGLLSIGLCKGDRLGMWGPNSYAWVL 139
>gi|53828683 olfactory receptor, family 52, subfamily B, member 2
[Homo sapiens]
Length = 323
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 32 LRTAGVWVPPMYLWVLGPIYLLFIHHHGRGYLRMSPLFKAKMVAAIPGSLEP 83
L T G + + ++ + + L HH GR + + A + A+P L P
Sbjct: 240 LSTCGSHLCVILMFYVPSFFTLLTHHFGRNIPQHVHILLANLYVAVPPMLNP 291
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,700,047
Number of Sequences: 37866
Number of extensions: 202531
Number of successful extensions: 318
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 14
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.