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Search of human proteins with 239751798
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751798 PREDICTED: hypothetical protein XP_002347989 [Homo
sapiens]
(85 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757293 PREDICTED: hypothetical protein XP_002345244 [Homo ... 169 4e-43
gi|239751798 PREDICTED: hypothetical protein XP_002347989 [Homo ... 169 4e-43
gi|239746289 PREDICTED: hypothetical protein XP_002343688 [Homo ... 169 4e-43
gi|66363688 NEDD8 activating enzyme E1 subunit 1 isoform c [Homo... 29 0.91
gi|66363686 NEDD8 activating enzyme E1 subunit 1 isoform b [Homo... 29 0.91
gi|4502169 NEDD8 activating enzyme E1 subunit 1 isoform a [Homo ... 29 0.91
gi|29550850 golgi membrane protein 1 [Homo sapiens] 27 2.7
gi|29550838 golgi membrane protein 1 [Homo sapiens] 27 2.7
gi|21361684 G patch domain containing 1 [Homo sapiens] 27 3.5
gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens] 27 4.5
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 26 5.9
gi|38176300 nestin [Homo sapiens] 26 7.7
gi|4507205 serum response factor (c-fos serum response element-b... 26 7.7
gi|4506321 protein tyrosine phosphatase, receptor type, N precur... 26 7.7
>gi|239757293 PREDICTED: hypothetical protein XP_002345244 [Homo
sapiens]
Length = 85
Score = 169 bits (428), Expect = 4e-43
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60
MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE
Sbjct: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60
Query: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85
DAAAVGGHIAGFVQEVRQAAAGCVH
Sbjct: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85
>gi|239751798 PREDICTED: hypothetical protein XP_002347989 [Homo
sapiens]
Length = 85
Score = 169 bits (428), Expect = 4e-43
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60
MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE
Sbjct: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60
Query: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85
DAAAVGGHIAGFVQEVRQAAAGCVH
Sbjct: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85
>gi|239746289 PREDICTED: hypothetical protein XP_002343688 [Homo
sapiens]
Length = 85
Score = 169 bits (428), Expect = 4e-43
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60
MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE
Sbjct: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60
Query: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85
DAAAVGGHIAGFVQEVRQAAAGCVH
Sbjct: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85
>gi|66363688 NEDD8 activating enzyme E1 subunit 1 isoform c [Homo
sapiens]
Length = 445
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 58 AEEDAAAVGGHIAGFVQEVRQA 79
A++DAAAVG H+A +Q + QA
Sbjct: 261 AKKDAAAVGNHVAKLLQSIGQA 282
>gi|66363686 NEDD8 activating enzyme E1 subunit 1 isoform b [Homo
sapiens]
Length = 528
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 58 AEEDAAAVGGHIAGFVQEVRQA 79
A++DAAAVG H+A +Q + QA
Sbjct: 344 AKKDAAAVGNHVAKLLQSIGQA 365
>gi|4502169 NEDD8 activating enzyme E1 subunit 1 isoform a [Homo
sapiens]
Length = 534
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 58 AEEDAAAVGGHIAGFVQEVRQA 79
A++DAAAVG H+A +Q + QA
Sbjct: 350 AKKDAAAVGNHVAKLLQSIGQA 371
>gi|29550850 golgi membrane protein 1 [Homo sapiens]
Length = 401
Score = 27.3 bits (59), Expect = 2.7
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 2 QRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEED 61
QRD LP+E G E +V RP+G + G + ELG+ QV L E +
Sbjct: 266 QRDRLPQEPGREQVVE-----DRPVGGRGFGG----AGELGQTPQVQAALSVSQENPEME 316
Query: 62 AAAVGGHIAGFVQEVRQAAAG 82
+ QE Q AAG
Sbjct: 317 GPERDQLVIPDGQEEEQEAAG 337
>gi|29550838 golgi membrane protein 1 [Homo sapiens]
Length = 401
Score = 27.3 bits (59), Expect = 2.7
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 2 QRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEED 61
QRD LP+E G E +V RP+G + G + ELG+ QV L E +
Sbjct: 266 QRDRLPQEPGREQVVE-----DRPVGGRGFGG----AGELGQTPQVQAALSVSQENPEME 316
Query: 62 AAAVGGHIAGFVQEVRQAAAG 82
+ QE Q AAG
Sbjct: 317 GPERDQLVIPDGQEEEQEAAG 337
>gi|21361684 G patch domain containing 1 [Homo sapiens]
Length = 931
Score = 26.9 bits (58), Expect = 3.5
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 7 PEEVGGEPLVALKEEY-PRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEEDAAAV 65
P + PLV +EE+ P NQ VD AE GEGS+ + L + + + D +
Sbjct: 709 PPKQQSSPLVNKEEEHAPELSANQTVNKDVDAQAE-GEGSRPSMDLFRAIFASSSDEKSS 767
Query: 66 GGHIAGFVQEVRQAAAG 82
E QA +G
Sbjct: 768 SSEDEQGDSEDDQAGSG 784
>gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]
Length = 2390
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 34 VVDQSAELGEGSQVGLQLGQVVAGAEEDAAAVGGHIAGFVQEVRQAAAG 82
V++ + LG L L + +AG E D A+ + +E AAG
Sbjct: 980 VIESTQGLGNDLAGVLALQRKLAGTERDLEAIAARVGELTREANALAAG 1028
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 13 EPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEEDAAAV 65
+P + L + PR + Q+ + ++DQ G G+ G + Q AGAE + V
Sbjct: 733 DPNLGLNRD-PRHLPKQEPISIIDQGEPKGTGATCGKKGSQ--AGAEGQPSTV 782
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 7 PEEVGGEPLVALKEEYPRPIGNQ 29
PE+V EPL +L +E RP+ N+
Sbjct: 780 PEKVDLEPLKSLDQEIARPLENE 802
>gi|4507205 serum response factor (c-fos serum response
element-binding transcription factor) [Homo sapiens]
Length = 508
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 49 LQLGQVVAGAEEDAAAVGGH 68
+++G VV G E AAA GG+
Sbjct: 105 MEIGMVVGGPEASAAATGGY 124
>gi|4506321 protein tyrosine phosphatase, receptor type, N precursor
[Homo sapiens]
Length = 979
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 28 NQQALGVVDQSAELGE-----GSQVGLQLGQVVAGAEEDAAAV 65
N+Q L + D + + G +Q GLQ+ Q G E+AAAV
Sbjct: 521 NEQNLSLADVTQQAGLVKSELEAQTGLQILQTGVGQREEAAAV 563
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,163,887
Number of Sequences: 37866
Number of extensions: 123140
Number of successful extensions: 259
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 14
length of query: 85
length of database: 18,247,518
effective HSP length: 57
effective length of query: 28
effective length of database: 16,089,156
effective search space: 450496368
effective search space used: 450496368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.