Search of human proteins with 239751670

Search of human proteins with 239751670

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751670 PREDICTED: similar to hCG16318 [Homo sapiens]
         (166 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751670 PREDICTED: similar to hCG16318 [Homo sapiens]            364   e-101
gi|24475816 glycoprotein, synaptic 2 [Homo sapiens]                   317   4e-87
gi|58332438 steroid 5 alpha-reductase 2-like 2 [Homo sapiens]         172   2e-43
gi|39812447 3-oxo-5 alpha-steroid 4-dehydrogenase 2 [Homo sapiens]     62   2e-10
gi|4507201 steroid-5-alpha-reductase 1 [Homo sapiens]                  59   1e-09
gi|13375785 steroid 5 alpha-reductase 3 [Homo sapiens]                 33   0.15 
gi|14589896 megalencephalic leukoencephalopathy with subcortical...    29   1.6  
gi|21237732 megalencephalic leukoencephalopathy with subcortical...    29   1.6  
gi|5902148 uroplakin 1A [Homo sapiens]                                 29   1.6  
gi|6978649 choline kinase beta [Homo sapiens]                          27   6.1  
gi|59710093 G-protein coupled receptor 112 [Homo sapiens]              27   6.1  
gi|37577159 calcium-sensing receptor [Homo sapiens]                    27   8.0  
gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Ho...    27   8.0  
gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Ho...    27   8.0  
gi|77176455 DNA cytosine methyltransferase 3 alpha isoform b [Ho...    27   8.0  
gi|7705330 COP9 complex subunit 7a [Homo sapiens]                      27   8.0  

>gi|239751670 PREDICTED: similar to hCG16318 [Homo sapiens]
          Length = 166

 Score =  364 bits (934), Expect = e-101
 Identities = 166/166 (100%), Positives = 166/166 (100%)

Query: 1   MGSICLVRCWPKSHPCPAPFQNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFV 60
           MGSICLVRCWPKSHPCPAPFQNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFV
Sbjct: 1   MGSICLVRCWPKSHPCPAPFQNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFV 60

Query: 61  ICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMT 120
           ICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMT
Sbjct: 61  ICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMT 120

Query: 121 QCLPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFLL 166
           QCLPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFLL
Sbjct: 121 QCLPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFLL 166


>gi|24475816 glycoprotein, synaptic 2 [Homo sapiens]
          Length = 308

 Score =  317 bits (811), Expect = 4e-87
 Identities = 146/147 (99%), Positives = 147/147 (100%)

Query: 20  FQNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPA 79
           F+NCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPA
Sbjct: 162 FKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPA 221

Query: 80  GSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIW 139
           GSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIW
Sbjct: 222 GSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIW 281

Query: 140 AKGKHRSYLKEFRDYPPLRMPIIPFLL 166
           AKGKHRSYLKEFRDYPPLRMPIIPFLL
Sbjct: 282 AKGKHRSYLKEFRDYPPLRMPIIPFLL 308


>gi|58332438 steroid 5 alpha-reductase 2-like 2 [Homo sapiens]
          Length = 363

 Score =  172 bits (435), Expect = 2e-43
 Identities = 73/145 (50%), Positives = 103/145 (71%), Gaps = 1/145 (0%)

Query: 22  NCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHMALRDLRPAGS 81
           +C +YWGF +W+AYYINHPLYTPP++G +Q+ ++   F+IC+ GN  I++ L      G+
Sbjct: 220 SCAFYWGFTSWIAYYINHPLYTPPSFGNRQITVSAINFLICEAGNHFINVMLSHPNHTGN 279

Query: 82  KTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAK 141
                P P  NPFTW+F LVSCPNYTYE+GSWI F +MTQ LPV +F+L+   QM++WA+
Sbjct: 280 NAC-FPSPNYNPFTWMFFLVSCPNYTYEIGSWISFTVMTQTLPVGIFTLLMSIQMSLWAQ 338

Query: 142 GKHRSYLKEFRDYPPLRMPIIPFLL 166
            KH+ YL++F  Y   +  +IPF+L
Sbjct: 339 KKHKIYLRKFNSYIHRKSAMIPFIL 363


>gi|39812447 3-oxo-5 alpha-steroid 4-dehydrogenase 2 [Homo sapiens]
          Length = 254

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 12  KSHPCPAPFQNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLGNFSIHM 71
           + +P     +   +  G      YY+ +    P  +    ++ +L +F+       +IH 
Sbjct: 105 RPYPAILILRGTAFCTGNGVLQGYYLIYCAEYPDGWYTD-IRFSLGVFLFILGMGINIHS 163

Query: 72  --ALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFS 129
              LR LR  G  + +IP         LF  VS  N+  E+  WIG+A+ T  LP   F+
Sbjct: 164 DYILRQLRKPGEISYRIPQGG------LFTYVSGANFLGEIIEWIGYALATWSLPALAFA 217

Query: 130 LVGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFL 165
                 + + A   HR YLK F DYP  R  +IPF+
Sbjct: 218 FFSLCFLGLRAFHHHRFYLKMFEDYPKSRKALIPFI 253


>gi|4507201 steroid-5-alpha-reductase 1 [Homo sapiens]
          Length = 259

 Score = 59.3 bits (142), Expect = 1e-09
 Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 11/169 (6%)

Query: 2   GSICLVRCWPKSHPCPAPFQNCTYYWGFAAWMAY----YINH-PLYTPPTYGAQQVKLAL 56
           G  CL+  +      P P   CT    F     Y    Y++H  +Y        +  +  
Sbjct: 96  GHRCLIYPFLMRGGKPMPLLACTMAIMFCTCNGYLQSRYLSHCAVYADDWVTDPRFLIGF 155

Query: 57  AIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGF 116
            +++   L N      LR+LR  G    KIP         LF  V+  NY  E+  W G+
Sbjct: 156 GLWLTGMLINIHSDHILRNLRKPGDTGYKIPRGG------LFEYVTAANYFGEIMEWCGY 209

Query: 117 AIMTQCLPVALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFL 165
           A+ +  +  A F+   F  ++  AK  H  YL++F +YP  R  IIPFL
Sbjct: 210 ALASWSVQGAAFAFFTFCFLSGRAKEHHEWYLRKFEEYPKFRKIIIPFL 258


>gi|13375785 steroid 5 alpha-reductase 3 [Homo sapiens]
          Length = 318

 Score = 32.7 bits (73), Expect = 0.15
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 3/114 (2%)

Query: 54  LALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSW 113
           L + +F+      +  H+ L +LR   +    I    + PF   F  VS PNY  E+  +
Sbjct: 205 LGMMMFIWSSAHQYKCHVILGNLRKNKAGV-VIHCNHRIPFGDWFEYVSSPNYLAELMIY 263

Query: 114 IGFAIMTQCLPVALFSLVG--FTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFL 165
           +  A+      +  + +V   F    + A   H+ Y  +F  YP  R   +PFL
Sbjct: 264 VSMAVTFGFHNLTWWLVVTNVFFNQALSAFLSHQFYKSKFVSYPKHRKAFLPFL 317


>gi|14589896 megalencephalic leukoencephalopathy with subcortical
           cysts 1 gene product [Homo sapiens]
          Length = 377

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 95  TWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGKHRSY-----LK 149
           T+ ++LV+C  +   + S +     ++CL   L ++   T   ++    + S+     ++
Sbjct: 231 TFFWILVAC--FPSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVE 288

Query: 150 EFRDYPPLRMPIIPFLL 166
            F+DYPP   P    LL
Sbjct: 289 MFKDYPPAIKPSYDVLL 305


>gi|21237732 megalencephalic leukoencephalopathy with subcortical
           cysts 1 gene product [Homo sapiens]
          Length = 377

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 95  TWLFLLVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGKHRSY-----LK 149
           T+ ++LV+C  +   + S +     ++CL   L ++   T   ++    + S+     ++
Sbjct: 231 TFFWILVAC--FPSAIASHVAAECPSKCLVEVLIAISSLTSPLLFTASGYLSFSIMRIVE 288

Query: 150 EFRDYPPLRMPIIPFLL 166
            F+DYPP   P    LL
Sbjct: 289 MFKDYPPAIKPSYDVLL 305


>gi|5902148 uroplakin 1A [Homo sapiens]
          Length = 258

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 105 NYTYEVGSWIGFAIMTQCLPVALFSLVGFTQM 136
           +YT+ + SW GFAI+   LPV L ++  +T +
Sbjct: 228 SYTWGI-SWFGFAILMWTLPVMLIAMYFYTML 258


>gi|6978649 choline kinase beta [Homo sapiens]
          Length = 395

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 133 FTQMTIWAKGKHRSYLKEFRDYPPLRMP 160
           FT+   W  G    YLK+ +D PP  +P
Sbjct: 181 FTKEPHWLFGTMERYLKQIQDLPPTGLP 208


>gi|59710093 G-protein coupled receptor 112 [Homo sapiens]
          Length = 3080

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 14/111 (12%)

Query: 54   LALAIFVICQLGNFSIHMALRDLRPAGSKTRKIPYPTK---NPFTWLFLLVSCPNYTYEV 110
            LAL  +  C + +  + +A+     A  K RK  YP K   N  T L +L    N  + +
Sbjct: 2743 LALITYTGCGISSIFLGVAVVTYI-AFHKLRK-DYPAKILINLCTALLML----NLVFLI 2796

Query: 111  GSWIG-FAIMTQCLPVAL----FSLVGFTQMTIWAKGKHRSYLKEFRDYPP 156
             SW+  F  +  C+  A+    F LV FT M + A   + + +K F  Y P
Sbjct: 2797 NSWLSSFQKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVFNIYIP 2847


>gi|37577159 calcium-sensing receptor [Homo sapiens]
          Length = 1078

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 100 LVSCPNYTYEVGSWIGFAIMTQCLPVALFSLVGFTQMTIWAKGKHRSYLKEF 151
           L++ P Y + VG  IGFA+    +P        F +     K  H  + KEF
Sbjct: 304 LIAMPQYFHVVGGTIGFALKAGQIP----GFREFLKKVHPRKSVHNGFAKEF 351


>gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Homo
           sapiens]
          Length = 912

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 27/106 (25%)

Query: 4   ICLVRCWPKSHPCPAPFQNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALA--IFVI 61
           +C+ +  P S  C A  Q            A Y   P+Y    Y   QV  + A  +F +
Sbjct: 339 VCVEKLMPLSSFCSAFHQ------------ATYNKQPMYRKAIYEVLQVASSRAGKLFPV 386

Query: 62  CQLGNFS-------------IHMALRDLRPAGSKTRKIPYPTKNPF 94
           C   + S             I  AL   +P+G K  + P   KNP+
Sbjct: 387 CHDSDESDTAKAVEVQNKPMIEWALGGFQPSGPKGLEPPEEEKNPY 432


>gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Homo
           sapiens]
          Length = 912

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 27/106 (25%)

Query: 4   ICLVRCWPKSHPCPAPFQNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALA--IFVI 61
           +C+ +  P S  C A  Q            A Y   P+Y    Y   QV  + A  +F +
Sbjct: 339 VCVEKLMPLSSFCSAFHQ------------ATYNKQPMYRKAIYEVLQVASSRAGKLFPV 386

Query: 62  CQLGNFS-------------IHMALRDLRPAGSKTRKIPYPTKNPF 94
           C   + S             I  AL   +P+G K  + P   KNP+
Sbjct: 387 CHDSDESDTAKAVEVQNKPMIEWALGGFQPSGPKGLEPPEEEKNPY 432


>gi|77176455 DNA cytosine methyltransferase 3 alpha isoform b [Homo
           sapiens]
          Length = 723

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 27/106 (25%)

Query: 4   ICLVRCWPKSHPCPAPFQNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALA--IFVI 61
           +C+ +  P S  C A  Q            A Y   P+Y    Y   QV  + A  +F +
Sbjct: 150 VCVEKLMPLSSFCSAFHQ------------ATYNKQPMYRKAIYEVLQVASSRAGKLFPV 197

Query: 62  CQLGNFS-------------IHMALRDLRPAGSKTRKIPYPTKNPF 94
           C   + S             I  AL   +P+G K  + P   KNP+
Sbjct: 198 CHDSDESDTAKAVEVQNKPMIEWALGGFQPSGPKGLEPPEEEKNPY 243


>gi|7705330 COP9 complex subunit 7a [Homo sapiens]
          Length = 275

 Score = 26.9 bits (58), Expect = 8.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 133 FTQMTIWAKGKHRSYLKEFRDYPPL 157
           F  +T++A G +  YL E R+ PPL
Sbjct: 64  FRLLTVFAYGTYADYLAEARNLPPL 88


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.143    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,613,373
Number of Sequences: 37866
Number of extensions: 327916
Number of successful extensions: 685
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 17
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.