Guide to the Human Genome
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Name: LOC100294376 Sequence: fasta or formatted (166aa) NCBI GI: 239751670
Description:

PREDICTED: similar to hCG16318

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         12           2
 C cysteine            4.2          7           1
 D aspartate           1.2          2           1
 E glutamate           1.2          2           1
 F phenylalanine       6.6         11           1
 G glycine             5.4          9           1
 H histidine           2.4          4           1
 I isoleucine          6.6         11           2
 K lysine              4.8          8           1
 L leucine            10.2         17           2
 M methionine          3.6          6           1
 N asparagine          3.0          5           1
 P proline            10.2         17           2
 Q glutamine           3.6          6           2
 R arginine            4.2          7           1
 S serine              4.8          8           1
 T threonine           6.0         10           1
 V valine              4.2          7           1
 W tryptophan          3.6          6           1
 Y tyrosine            6.6         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG16318 
GPSN2                 0.861   glycoprotein, synaptic 2 
SRD5A2L2              0.434   steroid 5 alpha-reductase 2-like 2 
SRD5A2                0.109   3-oxo-5 alpha-steroid 4-dehydrogenase 2 
SRD5A1                0.100   steroid-5-alpha-reductase 1 
SRD5A3                0.024   steroid 5 alpha-reductase 3 
MLC1                  0.012   megalencephalic leukoencephalopathy with subcortical...
MLC1                  0.012   megalencephalic leukoencephalopathy with subcortical...
UPK1A                 0.012   uroplakin 1A 
CHKB                  0.006   choline kinase beta 
GPR112                0.006   G-protein coupled receptor 112 
CASR                  0.006   calcium-sensing receptor 
DNMT3A                0.006   DNA cytosine methyltransferase 3 alpha isoform a [Ho...
DNMT3A                0.006   DNA cytosine methyltransferase 3 alpha isoform a [Ho...
DNMT3A                0.006   DNA cytosine methyltransferase 3 alpha isoform b [Ho...
COPS7A                0.006   COP9 complex subunit 7a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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