Search of human proteins with 239751576

Search of human proteins with 239751576

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751576 PREDICTED: hypothetical protein [Homo sapiens]
         (116 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751576 PREDICTED: hypothetical protein [Homo sapiens]           232   4e-62
gi|239746088 PREDICTED: hypothetical protein [Homo sapiens]           232   4e-62
gi|239757066 PREDICTED: hypothetical protein [Homo sapiens]           229   3e-61
gi|48255933 high-mobility group nucleosome binding domain 1 [Hom...   130   2e-31
gi|239757062 PREDICTED: similar to hCG1979072 [Homo sapiens]          115   6e-27
gi|239751572 PREDICTED: similar to hCG1979072 [Homo sapiens]          115   6e-27
gi|239746084 PREDICTED: similar to hCG1979072 [Homo sapiens]          115   6e-27
gi|20270186 high mobility group nucleosomal binding domain 3 iso...    52   8e-08
gi|169209024 PREDICTED: similar to high-mobility group nucleosom...    50   3e-07
gi|113425750 PREDICTED: similar to high-mobility group nucleosom...    50   3e-07
gi|113425298 PREDICTED: similar to high-mobility group nucleosom...    50   3e-07
gi|169162318 PREDICTED: similar to hCG2040565 [Homo sapiens]           49   7e-07
gi|169161838 PREDICTED: similar to hCG2040565 [Homo sapiens]           49   7e-07
gi|169162671 PREDICTED: similar to hCG2040565 [Homo sapiens]           49   7e-07
gi|5031749 high-mobility group nucleosomal binding domain 2 [Hom...    49   7e-07
gi|239755359 PREDICTED: similar to hCG2040565 [Homo sapiens]           47   3e-06
gi|169165461 PREDICTED: hypothetical protein [Homo sapiens]            47   3e-06
gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens]           47   3e-06
gi|169165899 PREDICTED: hypothetical protein [Homo sapiens]            47   3e-06
gi|239744152 PREDICTED: hypothetical protein XP_002343066 [Homo ...    47   3e-06
gi|169165087 PREDICTED: hypothetical protein [Homo sapiens]            47   3e-06
gi|169202834 PREDICTED: hypothetical protein [Homo sapiens]            45   9e-06
gi|169165669 PREDICTED: similar to high-mobility group nucleosom...    45   9e-06
gi|89034591 PREDICTED: hypothetical protein [Homo sapiens]             45   9e-06
gi|113415254 PREDICTED: similar to high-mobility group nucleosom...    45   9e-06
gi|89033815 PREDICTED: hypothetical protein [Homo sapiens]             45   9e-06
gi|113414676 PREDICTED: similar to high-mobility group nucleosom...    45   9e-06
gi|169208981 PREDICTED: hypothetical protein [Homo sapiens]            45   1e-05
gi|89039047 PREDICTED: hypothetical protein [Homo sapiens]             45   1e-05
gi|89038348 PREDICTED: hypothetical protein [Homo sapiens]             45   1e-05

>gi|239751576 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 116

 Score =  232 bits (592), Expect = 4e-62
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MSCRHPASSLPPTKVPKRMVSSAEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKS 60
           MSCRHPASSLPPTKVPKRMVSSAEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKS
Sbjct: 1   MSCRHPASSLPPTKVPKRMVSSAEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKS 60

Query: 61  SDKKVQTKGKKNGAKGEQGDMANQETKEDRPAENSDMKTEENPAFDEMREKEAKSH 116
           SDKKVQTKGKKNGAKGEQGDMANQETKEDRPAENSDMKTEENPAFDEMREKEAKSH
Sbjct: 61  SDKKVQTKGKKNGAKGEQGDMANQETKEDRPAENSDMKTEENPAFDEMREKEAKSH 116


>gi|239746088 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 116

 Score =  232 bits (592), Expect = 4e-62
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MSCRHPASSLPPTKVPKRMVSSAEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKS 60
           MSCRHPASSLPPTKVPKRMVSSAEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKS
Sbjct: 1   MSCRHPASSLPPTKVPKRMVSSAEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKS 60

Query: 61  SDKKVQTKGKKNGAKGEQGDMANQETKEDRPAENSDMKTEENPAFDEMREKEAKSH 116
           SDKKVQTKGKKNGAKGEQGDMANQETKEDRPAENSDMKTEENPAFDEMREKEAKSH
Sbjct: 61  SDKKVQTKGKKNGAKGEQGDMANQETKEDRPAENSDMKTEENPAFDEMREKEAKSH 116


>gi|239757066 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 116

 Score =  229 bits (585), Expect = 3e-61
 Identities = 115/116 (99%), Positives = 115/116 (99%)

Query: 1   MSCRHPASSLPPTKVPKRMVSSAEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKS 60
           MSCRHPASSLPPTKVPKRMVSSAEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKT ENKS
Sbjct: 1   MSCRHPASSLPPTKVPKRMVSSAEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTGENKS 60

Query: 61  SDKKVQTKGKKNGAKGEQGDMANQETKEDRPAENSDMKTEENPAFDEMREKEAKSH 116
           SDKKVQTKGKKNGAKGEQGDMANQETKEDRPAENSDMKTEENPAFDEMREKEAKSH
Sbjct: 61  SDKKVQTKGKKNGAKGEQGDMANQETKEDRPAENSDMKTEENPAFDEMREKEAKSH 116


>gi|48255933 high-mobility group nucleosome binding domain 1 [Homo
           sapiens]
          Length = 100

 Score =  130 bits (327), Expect = 2e-31
 Identities = 71/101 (70%), Positives = 80/101 (79%), Gaps = 2/101 (1%)

Query: 15  VPKRMVSSAEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGA 74
           +PKR VSSAE   KEEPKR SARLS KP A KVE KPK    ++KSSDKKVQTKGK+ GA
Sbjct: 1   MPKRKVSSAEGAAKEEPKRRSARLSAKPPA-KVEAKPKKAAAKDKSSDKKVQTKGKR-GA 58

Query: 75  KGEQGDMANQETKEDRPAENSDMKTEENPAFDEMREKEAKS 115
           KG+Q ++ANQETKED PAEN + KTEE+PA DE  EKEAKS
Sbjct: 59  KGKQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKS 99


>gi|239757062 PREDICTED: similar to hCG1979072 [Homo sapiens]
          Length = 121

 Score =  115 bits (289), Expect = 6e-27
 Identities = 63/88 (71%), Positives = 71/88 (80%), Gaps = 2/88 (2%)

Query: 28  KEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQETK 87
           KEEPKR SARLS KP A KVE KPK    ++KSSDKKVQTKGK+ GAKG+Q ++ANQETK
Sbjct: 35  KEEPKRRSARLSAKPPA-KVEAKPKKAAAKDKSSDKKVQTKGKR-GAKGKQTEVANQETK 92

Query: 88  EDRPAENSDMKTEENPAFDEMREKEAKS 115
           ED PAEN + KTEE+PA DE  EKEAKS
Sbjct: 93  EDLPAENGETKTEESPASDEAGEKEAKS 120


>gi|239751572 PREDICTED: similar to hCG1979072 [Homo sapiens]
          Length = 121

 Score =  115 bits (289), Expect = 6e-27
 Identities = 63/88 (71%), Positives = 71/88 (80%), Gaps = 2/88 (2%)

Query: 28  KEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQETK 87
           KEEPKR SARLS KP A KVE KPK    ++KSSDKKVQTKGK+ GAKG+Q ++ANQETK
Sbjct: 35  KEEPKRRSARLSAKPPA-KVEAKPKKAAAKDKSSDKKVQTKGKR-GAKGKQTEVANQETK 92

Query: 88  EDRPAENSDMKTEENPAFDEMREKEAKS 115
           ED PAEN + KTEE+PA DE  EKEAKS
Sbjct: 93  EDLPAENGETKTEESPASDEAGEKEAKS 120


>gi|239746084 PREDICTED: similar to hCG1979072 [Homo sapiens]
          Length = 121

 Score =  115 bits (289), Expect = 6e-27
 Identities = 63/88 (71%), Positives = 71/88 (80%), Gaps = 2/88 (2%)

Query: 28  KEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQETK 87
           KEEPKR SARLS KP A KVE KPK    ++KSSDKKVQTKGK+ GAKG+Q ++ANQETK
Sbjct: 35  KEEPKRRSARLSAKPPA-KVEAKPKKAAAKDKSSDKKVQTKGKR-GAKGKQTEVANQETK 92

Query: 88  EDRPAENSDMKTEENPAFDEMREKEAKS 115
           ED PAEN + KTEE+PA DE  EKEAKS
Sbjct: 93  EDLPAENGETKTEESPASDEAGEKEAKS 120


>gi|20270186 high mobility group nucleosomal binding domain 3
           isoform HMGN3a [Homo sapiens]
          Length = 99

 Score = 52.4 bits (124), Expect = 8e-08
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 10  LPPTKVPKRMVSS-AEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTK 68
           +P  K P+        +V K+EP R SARLS KPA  K E KP+      K+S KK    
Sbjct: 1   MPKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPR------KTSAKKEPGA 54

Query: 69  GKKNGAKGEQGDMANQETKEDRPAENSDMKTEE 101
               GAKG++ +      +   P+EN + K EE
Sbjct: 55  KISRGAKGKKEEKQEAGKEGTAPSENGETKAEE 87


>gi|169209024 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           V+++P+R SARLS KPA  K E KP           KKV  K  +   KGE G  A+   
Sbjct: 17  VRDKPQRRSARLSTKPAPPKPETKP-----------KKVPAKNGEKVLKGEMG-KADTGK 64

Query: 87  KEDRPAENSDMKTEE 101
           + ++PAEN D KT++
Sbjct: 65  EGNKPAENGDAKTDQ 79


>gi|113425750 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           V+++P+R SARLS KPA  K E KP           KKV  K  +   KGE G  A+   
Sbjct: 17  VRDKPQRRSARLSTKPAPPKPETKP-----------KKVPAKNGEKVLKGEMG-KADTGK 64

Query: 87  KEDRPAENSDMKTEE 101
           + ++PAEN D KT++
Sbjct: 65  EGNKPAENGDAKTDQ 79


>gi|113425298 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           V+++P+R SARLS KPA  K E KP           KKV  K  +   KGE G  A+   
Sbjct: 17  VRDKPQRRSARLSTKPAPPKPETKP-----------KKVPAKNGEKVLKGEMG-KADTGK 64

Query: 87  KEDRPAENSDMKTEE 101
           + ++PAEN D KT++
Sbjct: 65  EGNKPAENGDAKTDQ 79


>gi|169162318 PREDICTED: similar to hCG2040565 [Homo sapiens]
          Length = 193

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           VK+EP+R SARLS KP++ K E KPK      K+  KK +   K+   K + G   N   
Sbjct: 52  VKDEPQRRSARLSAKPSSPKPEPKPK------KAPAKKGEKVLKEKKGKADAGKEGN--- 102

Query: 87  KEDRPAENSDMKTEE 101
               PAEN D KT++
Sbjct: 103 ---NPAENGDAKTDQ 114


>gi|169161838 PREDICTED: similar to hCG2040565 [Homo sapiens]
          Length = 176

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           VK+EP+R SARLS KP++ K E KPK      K+  KK +   K+   K + G   N   
Sbjct: 35  VKDEPQRRSARLSAKPSSPKPEPKPK------KAPAKKGEKVLKEKKGKADAGKEGN--- 85

Query: 87  KEDRPAENSDMKTEE 101
               PAEN D KT++
Sbjct: 86  ---NPAENGDAKTDQ 97


>gi|169162671 PREDICTED: similar to hCG2040565 [Homo sapiens]
          Length = 176

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           VK+EP+R SARLS KP++ K E KPK      K+  KK +   K+   K + G   N   
Sbjct: 35  VKDEPQRRSARLSAKPSSPKPEPKPK------KAPAKKGEKVLKEKKGKADAGKEGN--- 85

Query: 87  KEDRPAENSDMKTEE 101
               PAEN D KT++
Sbjct: 86  ---NPAENGDAKTDQ 97


>gi|5031749 high-mobility group nucleosomal binding domain 2 [Homo
           sapiens]
          Length = 90

 Score = 49.3 bits (116), Expect = 7e-07
 Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           VK+EP+R SARLS KPA  K E KPK      K+  KK +   K    K + G   N   
Sbjct: 17  VKDEPQRRSARLSAKPAPPKPEPKPK------KAPAKKGEKVPKGKKGKADAGKEGN--- 67

Query: 87  KEDRPAENSDMKTEE 101
               PAEN D KT++
Sbjct: 68  ---NPAENGDAKTDQ 79


>gi|239755359 PREDICTED: similar to hCG2040565 [Homo sapiens]
          Length = 130

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 35/91 (38%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query: 15  VPKRMVSSAEE----VVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGK 70
           VPKR      +     VK++P+R S RLS KPA  K E  PK K    K  +K    KGK
Sbjct: 39  VPKRKAEGDAKGDKAKVKDKPQRRSMRLSAKPAPPKPE--PKPKNAPAKKGEK--VPKGK 94

Query: 71  KNGAKGEQGDMANQETKEDRPAENSDMKTEE 101
           K   + + G   N       PAEN D K +E
Sbjct: 95  KGARRADAGKEGN------NPAENGDAKRDE 119


>gi|169165461 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 38/94 (40%), Positives = 47/94 (50%), Gaps = 22/94 (23%)

Query: 15  VPKRMVSSAEE----VVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQ--TK 68
           VPKR      +     VK+EP+R S R S KPA  K E KPK      K+  KK +   K
Sbjct: 51  VPKRKAEGDAKGDKAKVKDEPQRRSMRFSAKPAPPKPEPKPK------KAPAKKGEKIPK 104

Query: 69  GKKNGA-KGEQGDMANQETKEDRPAENSDMKTEE 101
           GKK  A  GE+G         + PAEN D KT++
Sbjct: 105 GKKGKADAGEEG---------NNPAENGDAKTDQ 129


>gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens]
          Length = 171

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 35/91 (38%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query: 15  VPKRMVSSAEE----VVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGK 70
           VPKR      +     VK++P+R S RLS KPA  K E  PK K    K  +K    KGK
Sbjct: 80  VPKRKAEGDAKGDKAKVKDKPQRRSMRLSAKPAPPKPE--PKPKNAPAKKGEK--VPKGK 135

Query: 71  KNGAKGEQGDMANQETKEDRPAENSDMKTEE 101
           K   + + G   N       PAEN D K +E
Sbjct: 136 KGARRADAGKEGN------NPAENGDAKRDE 160


>gi|169165899 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 38/94 (40%), Positives = 47/94 (50%), Gaps = 22/94 (23%)

Query: 15  VPKRMVSSAEE----VVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQ--TK 68
           VPKR      +     VK+EP+R S R S KPA  K E KPK      K+  KK +   K
Sbjct: 51  VPKRKAEGDAKGDKAKVKDEPQRRSMRFSAKPAPPKPEPKPK------KAPAKKGEKIPK 104

Query: 69  GKKNGA-KGEQGDMANQETKEDRPAENSDMKTEE 101
           GKK  A  GE+G         + PAEN D KT++
Sbjct: 105 GKKGKADAGEEG---------NNPAENGDAKTDQ 129


>gi|239744152 PREDICTED: hypothetical protein XP_002343066 [Homo
           sapiens]
          Length = 171

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 35/91 (38%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query: 15  VPKRMVSSAEE----VVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGK 70
           VPKR      +     VK++P+R S RLS KPA  K E  PK K    K  +K    KGK
Sbjct: 80  VPKRKAEGDAKGDKAKVKDKPQRRSMRLSAKPAPPKPE--PKPKNAPAKKGEK--VPKGK 135

Query: 71  KNGAKGEQGDMANQETKEDRPAENSDMKTEE 101
           K   + + G   N       PAEN D K +E
Sbjct: 136 KGARRADAGKEGN------NPAENGDAKRDE 160


>gi|169165087 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 38/94 (40%), Positives = 47/94 (50%), Gaps = 22/94 (23%)

Query: 15  VPKRMVSSAEE----VVKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQ--TK 68
           VPKR      +     VK+EP+R S R S KPA  K E KPK      K+  KK +   K
Sbjct: 51  VPKRKAEGDAKGDKAKVKDEPQRRSMRFSAKPAPPKPEPKPK------KAPAKKGEKIPK 104

Query: 69  GKKNGA-KGEQGDMANQETKEDRPAENSDMKTEE 101
           GKK  A  GE+G         + PAEN D KT++
Sbjct: 105 GKKGKADAGEEG---------NNPAENGDAKTDQ 129


>gi|169202834 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 103

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 20/104 (19%)

Query: 2   SCRHPASSLPPTKVPKRMVSS----AEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRE 57
           S  HP  S  PT  P+R         +  VK++P+R S RL+ KPA  K   KPK    +
Sbjct: 3   STYHPPQS--PTPCPRRKAKGDAKGVKAKVKDKPQRRSVRLTAKPAPPKPGSKPKKGPAK 60

Query: 58  NKSSDKKVQTKGKKNGA-KGEQGDMANQETKEDRPAENSDMKTE 100
           N    +KV  KGKK  A  G++G         + PAEN + KT+
Sbjct: 61  N---GEKV-LKGKKGKADAGKEG---------NNPAENGETKTD 91


>gi|169165669 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           VK+EP+R S RLS KPA  K E KPK      K+  KK +   K    K + G+  N   
Sbjct: 17  VKDEPQRRSVRLSAKPAPPKPEPKPK------KAPAKKGEKVPKGKKGKADAGEEGN--- 67

Query: 87  KEDRPAENSDMKTEE 101
               PAEN   KT++
Sbjct: 68  ---NPAENGVAKTDQ 79


>gi|89034591 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 103

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 20/104 (19%)

Query: 2   SCRHPASSLPPTKVPKRMVSS----AEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRE 57
           S  HP  S  PT  P+R         +  VK++P+R S RL+ KPA  K   KPK    +
Sbjct: 3   STYHPPQS--PTPCPRRKAKGDAKGVKAKVKDKPQRRSVRLTAKPAPPKPGSKPKKGPAK 60

Query: 58  NKSSDKKVQTKGKKNGA-KGEQGDMANQETKEDRPAENSDMKTE 100
           N    +KV  KGKK  A  G++G         + PAEN + KT+
Sbjct: 61  N---GEKV-LKGKKGKADAGKEG---------NNPAENGETKTD 91


>gi|113415254 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           VK+EP+R S RLS KPA  K E KPK      K+  KK +   K    K + G+  N   
Sbjct: 17  VKDEPQRRSVRLSAKPAPPKPEPKPK------KAPAKKGEKVPKGKKGKADAGEEGN--- 67

Query: 87  KEDRPAENSDMKTEE 101
               PAEN   KT++
Sbjct: 68  ---NPAENGVAKTDQ 79


>gi|89033815 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 103

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 20/104 (19%)

Query: 2   SCRHPASSLPPTKVPKRMVSS----AEEVVKEEPKRTSARLSVKPAAAKVEMKPKMKTRE 57
           S  HP  S  PT  P+R         +  VK++P+R S RL+ KPA  K   KPK    +
Sbjct: 3   STYHPPQS--PTPCPRRKAKGDAKGVKAKVKDKPQRRSVRLTAKPAPPKPGSKPKKGPAK 60

Query: 58  NKSSDKKVQTKGKKNGA-KGEQGDMANQETKEDRPAENSDMKTE 100
           N    +KV  KGKK  A  G++G         + PAEN + KT+
Sbjct: 61  N---GEKV-LKGKKGKADAGKEG---------NNPAENGETKTD 91


>gi|113414676 PREDICTED: similar to high-mobility group nucleosomal
           binding domain 2 [Homo sapiens]
          Length = 90

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           VK+EP+R S RLS KPA  K E KPK      K+  KK +   K    K + G+  N   
Sbjct: 17  VKDEPQRRSVRLSAKPAPPKPEPKPK------KAPAKKGEKVPKGKKGKADAGEEGN--- 67

Query: 87  KEDRPAENSDMKTEE 101
               PAEN   KT++
Sbjct: 68  ---NPAENGVAKTDQ 79


>gi|169208981 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           +K++ +  S +LS KPA  K ++KPK           K  TK  +  +KGE+G  AN + 
Sbjct: 17  IKDKLQGRSTKLSGKPALPKPQLKPK-----------KAPTKKGEKVSKGEKG-RANSDK 64

Query: 87  KEDRPAENSDMKTEE 101
           + ++PAEN D +TE+
Sbjct: 65  EVNKPAENGDARTEK 79


>gi|89039047 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           +K++ +  S +LS KPA  K ++KPK           K  TK  +  +KGE+G  AN + 
Sbjct: 17  IKDKLQGRSTKLSGKPALPKPQLKPK-----------KAPTKKGEKVSKGEKG-RANSDK 64

Query: 87  KEDRPAENSDMKTEE 101
           + ++PAEN D +TE+
Sbjct: 65  EVNKPAENGDARTEK 79


>gi|89038348 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 90

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 12/75 (16%)

Query: 27  VKEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQET 86
           +K++ +  S +LS KPA  K ++KPK           K  TK  +  +KGE+G  AN + 
Sbjct: 17  IKDKLQGRSTKLSGKPALPKPQLKPK-----------KAPTKKGEKVSKGEKG-RANSDK 64

Query: 87  KEDRPAENSDMKTEE 101
           + ++PAEN D +TE+
Sbjct: 65  EVNKPAENGDARTEK 79


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.299    0.115    0.304 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,532,007
Number of Sequences: 37866
Number of extensions: 180519
Number of successful extensions: 1747
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 232
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 675
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.