Guide to the Human Genome
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Name: LOC646853 Sequence: fasta or formatted (90aa) NCBI GI: 169209024
Description:

PREDICTED: similar to high-mobility group nucleosomal binding domain 2

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt mRNA [90aa] PREDICTED: similar to high-mobility group nucleosomal binding dom...
alt mRNA [90aa] PREDICTED: similar to high-mobility group nucleosomal binding dom...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         11           1
 C cysteine            0.0          0           0
 D aspartate           7.8          7           1
 E glutamate           7.8          7           1
 F phenylalanine       0.0          0           0
 G glycine            12.2         11           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine             22.2         20           2
 L leucine             2.2          2           1
 M methionine          2.2          2           1
 N asparagine          3.3          3           1
 P proline            10.0          9           2
 Q glutamine           3.3          3           1
 R arginine            5.6          5           2
 S serine              2.2          2           1
 T threonine           5.6          5           1
 V valine              3.3          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to high-mobility group nucleosom... 
LOC646853             1.000   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             1.000   PREDICTED: similar to high-mobility group nucleosom...
HMGN2                 0.839   high-mobility group nucleosomal binding domain 2 [Hom...
LOC729505             0.776   PREDICTED: hypothetical protein 
LOC729505             0.776   PREDICTED: hypothetical protein 
LOC729505             0.776   PREDICTED: hypothetical protein 
LOC648822             0.770   PREDICTED: similar to hCG2040565 
LOC648822             0.770   PREDICTED: similar to hCG2040565 
LOC648822             0.770   PREDICTED: similar to hCG2040565 
LOC644992             0.764   PREDICTED: hypothetical protein 
LOC644992             0.764   PREDICTED: hypothetical protein 
LOC644992             0.764   PREDICTED: hypothetical protein 
LOC100293829          0.745   PREDICTED: similar to hCG2040565 
LOC100288691          0.745   PREDICTED: similar to hCG2040565 
LOC100288691          0.745   PREDICTED: hypothetical protein XP_002343066 
LOC729687             0.745   PREDICTED: similar to high-mobility group nucleosom...
LOC729687             0.745   PREDICTED: similar to high-mobility group nucleosom...
LOC729687             0.745   PREDICTED: similar to high-mobility group nucleosom...
HMGN4                 0.714   high mobility group nucleosomal binding domain 4 [Ho...
LOC646049             0.696   PREDICTED: hypothetical protein 
LOC646049             0.696   PREDICTED: hypothetical protein 
LOC646049             0.696   PREDICTED: hypothetical protein 
LOC100292625          0.683   PREDICTED: similar to hCG2040565 
LOC100291244          0.683   PREDICTED: hypothetical protein XP_002348261 
LOC100287582          0.683   PREDICTED: hypothetical protein XP_002342251 
LOC645263             0.665   PREDICTED: hypothetical protein 
LOC645263             0.665   PREDICTED: hypothetical protein 
LOC645263             0.665   PREDICTED: hypothetical protein 
LOC100128372          0.547   PREDICTED: similar to hCG2040192 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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