Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC645263 Sequence: fasta or formatted (90aa) NCBI GI: 169208981
Description:

PREDICTED: hypothetical protein

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt mRNA [90aa] PREDICTED: hypothetical protein
alt mRNA [90aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         12           1
 C cysteine            0.0          0           0
 D aspartate           6.7          6           1
 E glutamate           8.9          8           1
 F phenylalanine       0.0          0           0
 G glycine            10.0          9           1
 H histidine           0.0          0           0
 I isoleucine          1.1          1           1
 K lysine             25.6         23           2
 L leucine             4.4          4           1
 M methionine          1.1          1           1
 N asparagine          3.3          3           1
 P proline             7.8          7           1
 Q glutamine           3.3          3           1
 R arginine            4.4          4           1
 S serine              4.4          4           1
 T threonine           3.3          3           1
 V valine              2.2          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC645263             1.000   PREDICTED: hypothetical protein 
LOC645263             1.000   PREDICTED: hypothetical protein 
HMGN2                 0.724   high-mobility group nucleosomal binding domain 2 [Hom...
LOC646853             0.686   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.686   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.686   PREDICTED: similar to high-mobility group nucleosom...
LOC729505             0.673   PREDICTED: hypothetical protein 
LOC729505             0.673   PREDICTED: hypothetical protein 
LOC729505             0.673   PREDICTED: hypothetical protein 
LOC100293829          0.660   PREDICTED: similar to hCG2040565 
LOC729687             0.660   PREDICTED: similar to high-mobility group nucleosom...
LOC100288691          0.660   PREDICTED: similar to hCG2040565 
LOC729687             0.660   PREDICTED: similar to high-mobility group nucleosom...
LOC100288691          0.660   PREDICTED: hypothetical protein XP_002343066 
LOC729687             0.660   PREDICTED: similar to high-mobility group nucleosom...
LOC648822             0.647   PREDICTED: similar to hCG2040565 
LOC648822             0.647   PREDICTED: similar to hCG2040565 
LOC648822             0.647   PREDICTED: similar to hCG2040565 
LOC644992             0.615   PREDICTED: hypothetical protein 
LOC644992             0.615   PREDICTED: hypothetical protein 
LOC644992             0.615   PREDICTED: hypothetical protein 
LOC646049             0.609   PREDICTED: hypothetical protein 
LOC646049             0.609   PREDICTED: hypothetical protein 
LOC646049             0.609   PREDICTED: hypothetical protein 
HMGN4                 0.603   high mobility group nucleosomal binding domain 4 [Ho...
LOC100292625          0.583   PREDICTED: similar to hCG2040565 
LOC100291244          0.583   PREDICTED: hypothetical protein XP_002348261 
LOC100287582          0.583   PREDICTED: hypothetical protein XP_002342251 
LOC100128372          0.455   PREDICTED: similar to hCG2040192 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press