Guide to the Human Genome
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Name: LOC728111 Sequence: fasta or formatted (116aa) NCBI GI: 239757066
Description:

PREDICTED: hypothetical protein

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [116aa] PREDICTED: hypothetical protein
alt prot [116aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         11           3
 C cysteine            0.9          1           1
 D aspartate           4.3          5           1
 E glutamate          12.9         15           2
 F phenylalanine       0.9          1           1
 G glycine             4.3          5           1
 H histidine           1.7          2           1
 I isoleucine          0.0          0           0
 K lysine             17.2         20           2
 L leucine             1.7          2           1
 M methionine          6.0          7           1
 N asparagine          4.3          5           1
 P proline             7.8          9           2
 Q glutamine           2.6          3           1
 R arginine            5.2          6           1
 S serine              9.5         11           2
 T threonine           5.2          6           1
 V valine              6.0          7           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728111             0.981   PREDICTED: hypothetical protein 
LOC728111             0.981   PREDICTED: hypothetical protein 
HMGN1                 0.505   high-mobility group nucleosome binding domain 1 [Hom...
LOC100132992          0.438   PREDICTED: similar to hCG1979072 
LOC100132992          0.438   PREDICTED: similar to hCG1979072 
LOC100132992          0.438   PREDICTED: similar to hCG1979072 
HMGN3                 0.135   high mobility group nucleosomal binding domain 3 iso...
LOC646853             0.120   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.120   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.120   PREDICTED: similar to high-mobility group nucleosom...
LOC648822             0.115   PREDICTED: similar to hCG2040565 
LOC648822             0.115   PREDICTED: similar to hCG2040565 
LOC648822             0.115   PREDICTED: similar to hCG2040565 
HMGN2                 0.115   high-mobility group nucleosomal binding domain 2 [Hom...
LOC100293829          0.106   PREDICTED: similar to hCG2040565 
LOC100288691          0.106   PREDICTED: similar to hCG2040565 
LOC100288691          0.106   PREDICTED: hypothetical protein XP_002343066 
LOC644992             0.106   PREDICTED: hypothetical protein 
LOC729505             0.106   PREDICTED: hypothetical protein 
LOC644992             0.106   PREDICTED: hypothetical protein 
LOC729505             0.106   PREDICTED: hypothetical protein 
LOC644992             0.106   PREDICTED: hypothetical protein 
LOC729505             0.106   PREDICTED: hypothetical protein 
LOC729687             0.096   PREDICTED: similar to high-mobility group nucleosom...
LOC729687             0.096   PREDICTED: similar to high-mobility group nucleosom...
LOC729687             0.096   PREDICTED: similar to high-mobility group nucleosom...
LOC645263             0.096   PREDICTED: hypothetical protein 
LOC645263             0.096   PREDICTED: hypothetical protein 
LOC645263             0.096   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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