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Search of human proteins with 239750541
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750541 PREDICTED: hypothetical protein XP_002347436 [Homo
sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756020 PREDICTED: hypothetical protein [Homo sapiens] 314 1e-86
gi|239750541 PREDICTED: hypothetical protein XP_002347436 [Homo ... 314 1e-86
gi|239744840 PREDICTED: hypothetical protein XP_002343284 [Homo ... 314 1e-86
gi|22749135 hypothetical protein LOC152992 isoform 2 [Homo sapiens] 32 0.24
gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens] 29 1.2
gi|194018492 transmembrane protease, serine 11F [Homo sapiens] 29 1.6
gi|215820652 StAR-related lipid transfer (START) domain containi... 28 2.0
gi|215820650 StAR-related lipid transfer (START) domain containi... 28 2.0
gi|31543659 StAR-related lipid transfer (START) domain containin... 28 2.0
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 27 4.5
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens] 27 7.7
gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens] 27 7.7
gi|73695465 synaptic vesicle glycoprotein 2C [Homo sapiens] 27 7.7
>gi|239756020 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 314 bits (805), Expect = 1e-86
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MSLKSLFCNSEAKDNKCYHTYSESSWSETKKIVIATKIHSFQTFSSCYSDCHGILGVLLH 60
MSLKSLFCNSEAKDNKCYHTYSESSWSETKKIVIATKIHSFQTFSSCYSDCHGILGVLLH
Sbjct: 1 MSLKSLFCNSEAKDNKCYHTYSESSWSETKKIVIATKIHSFQTFSSCYSDCHGILGVLLH 60
Query: 61 QLETSVAGGTFCLSIAHAWWARFAHSSWKAALGSCYQPGFHTCQGQARLGSVRGVWASEH 120
QLETSVAGGTFCLSIAHAWWARFAHSSWKAALGSCYQPGFHTCQGQARLGSVRGVWASEH
Sbjct: 61 QLETSVAGGTFCLSIAHAWWARFAHSSWKAALGSCYQPGFHTCQGQARLGSVRGVWASEH 120
Query: 121 GVQPQRTGRHTGCCGRVGSFRHCS 144
GVQPQRTGRHTGCCGRVGSFRHCS
Sbjct: 121 GVQPQRTGRHTGCCGRVGSFRHCS 144
>gi|239750541 PREDICTED: hypothetical protein XP_002347436 [Homo
sapiens]
Length = 144
Score = 314 bits (805), Expect = 1e-86
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MSLKSLFCNSEAKDNKCYHTYSESSWSETKKIVIATKIHSFQTFSSCYSDCHGILGVLLH 60
MSLKSLFCNSEAKDNKCYHTYSESSWSETKKIVIATKIHSFQTFSSCYSDCHGILGVLLH
Sbjct: 1 MSLKSLFCNSEAKDNKCYHTYSESSWSETKKIVIATKIHSFQTFSSCYSDCHGILGVLLH 60
Query: 61 QLETSVAGGTFCLSIAHAWWARFAHSSWKAALGSCYQPGFHTCQGQARLGSVRGVWASEH 120
QLETSVAGGTFCLSIAHAWWARFAHSSWKAALGSCYQPGFHTCQGQARLGSVRGVWASEH
Sbjct: 61 QLETSVAGGTFCLSIAHAWWARFAHSSWKAALGSCYQPGFHTCQGQARLGSVRGVWASEH 120
Query: 121 GVQPQRTGRHTGCCGRVGSFRHCS 144
GVQPQRTGRHTGCCGRVGSFRHCS
Sbjct: 121 GVQPQRTGRHTGCCGRVGSFRHCS 144
>gi|239744840 PREDICTED: hypothetical protein XP_002343284 [Homo
sapiens]
Length = 144
Score = 314 bits (805), Expect = 1e-86
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MSLKSLFCNSEAKDNKCYHTYSESSWSETKKIVIATKIHSFQTFSSCYSDCHGILGVLLH 60
MSLKSLFCNSEAKDNKCYHTYSESSWSETKKIVIATKIHSFQTFSSCYSDCHGILGVLLH
Sbjct: 1 MSLKSLFCNSEAKDNKCYHTYSESSWSETKKIVIATKIHSFQTFSSCYSDCHGILGVLLH 60
Query: 61 QLETSVAGGTFCLSIAHAWWARFAHSSWKAALGSCYQPGFHTCQGQARLGSVRGVWASEH 120
QLETSVAGGTFCLSIAHAWWARFAHSSWKAALGSCYQPGFHTCQGQARLGSVRGVWASEH
Sbjct: 61 QLETSVAGGTFCLSIAHAWWARFAHSSWKAALGSCYQPGFHTCQGQARLGSVRGVWASEH 120
Query: 121 GVQPQRTGRHTGCCGRVGSFRHCS 144
GVQPQRTGRHTGCCGRVGSFRHCS
Sbjct: 121 GVQPQRTGRHTGCCGRVGSFRHCS 144
>gi|22749135 hypothetical protein LOC152992 isoform 2 [Homo sapiens]
Length = 365
Score = 31.6 bits (70), Expect = 0.24
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 103 CQGQ----ARLGSVRGVWASEHGVQPQRTG 128
C GQ AR+G V WA+EHG PQ G
Sbjct: 162 CDGQQALDARVGCVTRAWAAEHGAGPQAEG 191
>gi|122114651 ubiquitin specific peptidase 36 [Homo sapiens]
Length = 1123
Score = 29.3 bits (64), Expect = 1.2
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 97 QPG--FHTCQGQARLGSVRGVWASEHGVQPQRTGRHTGC 133
QPG + +GQA+L +VR E G QPQ G+ GC
Sbjct: 868 QPGSPMYRREGQAQLPAVR---RQEDGTQPQVNGQQVGC 903
>gi|194018492 transmembrane protease, serine 11F [Homo sapiens]
Length = 438
Score = 28.9 bits (63), Expect = 1.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 60 HQLETSVAGGTFCLSIAHAWWARFAHSSWKAALGSCYQP 98
HQ S+ T+ L+ AH +W + W A G+ P
Sbjct: 231 HQCGASLISNTWLLTAAHCFWKNKDPTQWIATFGATITP 269
>gi|215820652 StAR-related lipid transfer (START) domain containing
8 isoform b [Homo sapiens]
Length = 1023
Score = 28.5 bits (62), Expect = 2.0
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 45 SSCYSDCHGILGVLLHQLET---SVAGGTFCLSIAHAW--W--ARFAHSSWKAALGSC-- 95
+S + C G L ++ + + AGG+ + AW W A F H W G C
Sbjct: 162 ASSFRSCRGFLSAGFYRAKNWAATSAGGSGA-NTRKAWEAWPVASFRHPQWTHR-GDCLV 219
Query: 96 YQPGFHTCQGQARLGSVRGVWASE-HGVQPQRTGRHTGCCGRVGS 139
+ PG H R S+ + + H + + GR GC GR GS
Sbjct: 220 HVPGDHKPGTFPRSLSIESLCPEDGHRLADWQPGRRWGCEGRRGS 264
>gi|215820650 StAR-related lipid transfer (START) domain containing
8 isoform a [Homo sapiens]
Length = 1103
Score = 28.5 bits (62), Expect = 2.0
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 45 SSCYSDCHGILGVLLHQLET---SVAGGTFCLSIAHAW--W--ARFAHSSWKAALGSC-- 95
+S + C G L ++ + + AGG+ + AW W A F H W G C
Sbjct: 242 ASSFRSCRGFLSAGFYRAKNWAATSAGGSGA-NTRKAWEAWPVASFRHPQWTHR-GDCLV 299
Query: 96 YQPGFHTCQGQARLGSVRGVWASE-HGVQPQRTGRHTGCCGRVGS 139
+ PG H R S+ + + H + + GR GC GR GS
Sbjct: 300 HVPGDHKPGTFPRSLSIESLCPEDGHRLADWQPGRRWGCEGRRGS 344
>gi|31543659 StAR-related lipid transfer (START) domain containing 8
isoform b [Homo sapiens]
Length = 1023
Score = 28.5 bits (62), Expect = 2.0
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 45 SSCYSDCHGILGVLLHQLET---SVAGGTFCLSIAHAW--W--ARFAHSSWKAALGSC-- 95
+S + C G L ++ + + AGG+ + AW W A F H W G C
Sbjct: 162 ASSFRSCRGFLSAGFYRAKNWAATSAGGSGA-NTRKAWEAWPVASFRHPQWTHR-GDCLV 219
Query: 96 YQPGFHTCQGQARLGSVRGVWASE-HGVQPQRTGRHTGCCGRVGS 139
+ PG H R S+ + + H + + GR GC GR GS
Sbjct: 220 HVPGDHKPGTFPRSLSIESLCPEDGHRLADWQPGRRWGCEGRRGS 264
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 27.3 bits (59), Expect = 4.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 85 HSSWKAALGSCYQPGFHTCQGQARLGSVRGVWASEHGVQPQRT 127
H AA G+C +P H Q GV S G +PQRT
Sbjct: 70 HKRCAAACGACARPPGHQLQPPGAGAPQPGVACSYLGPRPQRT 112
>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
Length = 2778
Score = 26.6 bits (57), Expect = 7.7
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 22/106 (20%)
Query: 8 CNSEAKDNKCYHTYSESSWSETKKIVIATKIHSFQTFSSCYSDCHGILGVLLHQLETS-- 65
C ++ KC T ET++I+ + + FS H +L V +E+S
Sbjct: 1934 CEQCTREGKCMWTRQFKRTGETRRILSVQPTYDWTCFS------HSLLNVSPMPVESSPP 1987
Query: 66 ---------VAGGTFCLSI--AHAWWARFAHSSWKAALGSCYQPGF 100
+ T CL A W H W ++L C P +
Sbjct: 1988 LPCPTPCHLLPNCTSCLDSKGADGGW---QHCVWSSSLQQCLSPSY 2030
>gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens]
Length = 742
Score = 26.6 bits (57), Expect = 7.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 68 GGTFCLSIAHAWWARFAHSSWKAALGSCYQPGFHT 102
GG + ++A WA H W +GS YQ FH+
Sbjct: 303 GGVYAAAMA---WAIIPHYGWSFQMGSAYQ--FHS 332
>gi|73695465 synaptic vesicle glycoprotein 2C [Homo sapiens]
Length = 727
Score = 26.6 bits (57), Expect = 7.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 68 GGTFCLSIAHAWWARFAHSSWKAALGSCYQPGFHT 102
GG + ++A WA H W ++GS YQ FH+
Sbjct: 289 GGIYASAMA---WAIIPHYGWSFSMGSAYQ--FHS 318
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.131 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,129,593
Number of Sequences: 37866
Number of extensions: 251999
Number of successful extensions: 672
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 13
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.