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Search of human proteins with 239750237
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo
sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophi... 303 4e-83
gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo ... 303 4e-83
gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo ... 303 4e-83
gi|15082258 chromobox homolog 3 [Homo sapiens] 140 5e-34
gi|20544151 chromobox homolog 3 [Homo sapiens] 140 5e-34
gi|5803076 heterochromatin protein 1-beta [Homo sapiens] 103 5e-23
gi|187960037 heterochromatin protein 1-beta [Homo sapiens] 103 5e-23
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] 100 4e-22
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] 100 4e-22
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] 100 4e-22
gi|170650674 phosphodiesterase 6A [Homo sapiens] 27 4.4
gi|25282407 interferon-stimulated transcription factor 3, gamma ... 27 7.4
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 26 9.7
>gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophila
HP1 gamma) [Homo sapiens]
Length = 142
Score = 303 bits (775), Expect = 4e-83
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60
MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK
Sbjct: 1 MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60
Query: 61 KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120
KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA
Sbjct: 61 KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120
Query: 121 WPVIAFYEERLTWHFCPEDETQ 142
WPVIAFYEERLTWHFCPEDETQ
Sbjct: 121 WPVIAFYEERLTWHFCPEDETQ 142
>gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo
sapiens]
Length = 142
Score = 303 bits (775), Expect = 4e-83
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60
MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK
Sbjct: 1 MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60
Query: 61 KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120
KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA
Sbjct: 61 KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120
Query: 121 WPVIAFYEERLTWHFCPEDETQ 142
WPVIAFYEERLTWHFCPEDETQ
Sbjct: 121 WPVIAFYEERLTWHFCPEDETQ 142
>gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo
sapiens]
Length = 142
Score = 303 bits (775), Expect = 4e-83
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60
MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK
Sbjct: 1 MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60
Query: 61 KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120
KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA
Sbjct: 61 KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120
Query: 121 WPVIAFYEERLTWHFCPEDETQ 142
WPVIAFYEERLTWHFCPEDETQ
Sbjct: 121 WPVIAFYEERLTWHFCPEDETQ 142
>gi|15082258 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 140 bits (352), Expect = 5e-34
Identities = 72/106 (67%), Positives = 81/106 (76%), Gaps = 5/106 (4%)
Query: 37 GSGQCGTPPLILFGTESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRW 96
G + GT L +ESD SKS+KKRDAADKPRGFA GLDPER+IGATD SG+ MFLM+W
Sbjct: 83 GKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKW 142
Query: 97 KDSGEADFMLAKEASMQFSQFHYAWPVIAFYEERLTWHFCPEDETQ 142
KDS EAD +LAKEA+M+ Q VIAFYEERLTWH CPEDE Q
Sbjct: 143 KDSDEADLVLAKEANMKCPQI-----VIAFYEERLTWHSCPEDEAQ 183
>gi|20544151 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 140 bits (352), Expect = 5e-34
Identities = 72/106 (67%), Positives = 81/106 (76%), Gaps = 5/106 (4%)
Query: 37 GSGQCGTPPLILFGTESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRW 96
G + GT L +ESD SKS+KKRDAADKPRGFA GLDPER+IGATD SG+ MFLM+W
Sbjct: 83 GKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKW 142
Query: 97 KDSGEADFMLAKEASMQFSQFHYAWPVIAFYEERLTWHFCPEDETQ 142
KDS EAD +LAKEA+M+ Q VIAFYEERLTWH CPEDE Q
Sbjct: 143 KDSDEADLVLAKEANMKCPQI-----VIAFYEERLTWHSCPEDEAQ 183
>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 103 bits (257), Expect = 5e-23
Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%)
Query: 52 ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111
+ + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+
Sbjct: 94 KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153
Query: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140
++ Q VI+FYEERLTWH P ++
Sbjct: 154 VKCPQV-----VISFYEERLTWHSYPSED 177
>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 103 bits (257), Expect = 5e-23
Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%)
Query: 52 ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111
+ + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+
Sbjct: 94 KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153
Query: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140
++ Q VI+FYEERLTWH P ++
Sbjct: 154 VKCPQV-----VISFYEERLTWHSYPSED 177
>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 100 bits (249), Expect = 4e-22
Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)
Query: 49 FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107
F +D KS+KKR+ + D RGF GL+PE++IGATD G MFLM+WKD+ EAD +LA
Sbjct: 94 FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153
Query: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139
KEA+++ Q VIAFYEERLTWH PED
Sbjct: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180
>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 100 bits (249), Expect = 4e-22
Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)
Query: 49 FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107
F +D KS+KKR+ + D RGF GL+PE++IGATD G MFLM+WKD+ EAD +LA
Sbjct: 94 FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153
Query: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139
KEA+++ Q VIAFYEERLTWH PED
Sbjct: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180
>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 100 bits (249), Expect = 4e-22
Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)
Query: 49 FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107
F +D KS+KKR+ + D RGF GL+PE++IGATD G MFLM+WKD+ EAD +LA
Sbjct: 94 FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153
Query: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139
KEA+++ Q VIAFYEERLTWH PED
Sbjct: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180
>gi|170650674 phosphodiesterase 6A [Homo sapiens]
Length = 860
Score = 27.3 bits (59), Expect = 4.4
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 70 GFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFH 118
G T + E+ + + G K + + ++ +D + AKEA++ FS +H
Sbjct: 2 GEVTAEEVEKFLDSNIGFAKQYYNLHYRAKLISDLLGAKEAAVDFSNYH 50
>gi|25282407 interferon-stimulated transcription factor 3, gamma
48kDa [Homo sapiens]
Length = 393
Score = 26.6 bits (57), Expect = 7.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 85 DGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYAWPV 123
D + K MF + WK +G+ DF ++A+ F AW +
Sbjct: 31 DDTAKTMFRIPWKHAGKQDFREDQDAA-----FFKAWAI 64
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 26.2 bits (56), Expect = 9.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 57 KSQKKRDAADKPRGFATGLDPERVIGATDGSGKWM 91
K KK A++PRG + V GA G WM
Sbjct: 440 KELKKSGGAEEPRGSESAAAARPVAGAPVPQGAWM 474
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.141 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,967,187
Number of Sequences: 37866
Number of extensions: 250752
Number of successful extensions: 567
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 17
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.