Guide to the Human Genome
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Search of human proteins with 239750237

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo
sapiens]
         (142 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophi...   303   4e-83
gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo ...   303   4e-83
gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo ...   303   4e-83
gi|15082258 chromobox homolog 3 [Homo sapiens]                        140   5e-34
gi|20544151 chromobox homolog 3 [Homo sapiens]                        140   5e-34
gi|5803076 heterochromatin protein 1-beta [Homo sapiens]              103   5e-23
gi|187960037 heterochromatin protein 1-beta [Homo sapiens]            103   5e-23
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]           100   4e-22
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]           100   4e-22
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]             100   4e-22
gi|170650674 phosphodiesterase 6A [Homo sapiens]                       27   4.4  
gi|25282407 interferon-stimulated transcription factor 3, gamma ...    27   7.4  
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]            26   9.7  

>gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophila
           HP1 gamma) [Homo sapiens]
          Length = 142

 Score =  303 bits (775), Expect = 4e-83
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60
           MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK
Sbjct: 1   MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60

Query: 61  KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120
           KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA
Sbjct: 61  KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120

Query: 121 WPVIAFYEERLTWHFCPEDETQ 142
           WPVIAFYEERLTWHFCPEDETQ
Sbjct: 121 WPVIAFYEERLTWHFCPEDETQ 142


>gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo
           sapiens]
          Length = 142

 Score =  303 bits (775), Expect = 4e-83
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60
           MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK
Sbjct: 1   MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60

Query: 61  KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120
           KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA
Sbjct: 61  KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120

Query: 121 WPVIAFYEERLTWHFCPEDETQ 142
           WPVIAFYEERLTWHFCPEDETQ
Sbjct: 121 WPVIAFYEERLTWHFCPEDETQ 142


>gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo
           sapiens]
          Length = 142

 Score =  303 bits (775), Expect = 4e-83
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60
           MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK
Sbjct: 1   MVGAGFRGGSLPQTVLGLHLLILHVWRFLFCVFFFIGSGQCGTPPLILFGTESDVSKSQK 60

Query: 61  KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120
           KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA
Sbjct: 61  KRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYA 120

Query: 121 WPVIAFYEERLTWHFCPEDETQ 142
           WPVIAFYEERLTWHFCPEDETQ
Sbjct: 121 WPVIAFYEERLTWHFCPEDETQ 142


>gi|15082258 chromobox homolog 3 [Homo sapiens]
          Length = 183

 Score =  140 bits (352), Expect = 5e-34
 Identities = 72/106 (67%), Positives = 81/106 (76%), Gaps = 5/106 (4%)

Query: 37  GSGQCGTPPLILFGTESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRW 96
           G  + GT    L  +ESD SKS+KKRDAADKPRGFA GLDPER+IGATD SG+ MFLM+W
Sbjct: 83  GKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKW 142

Query: 97  KDSGEADFMLAKEASMQFSQFHYAWPVIAFYEERLTWHFCPEDETQ 142
           KDS EAD +LAKEA+M+  Q      VIAFYEERLTWH CPEDE Q
Sbjct: 143 KDSDEADLVLAKEANMKCPQI-----VIAFYEERLTWHSCPEDEAQ 183


>gi|20544151 chromobox homolog 3 [Homo sapiens]
          Length = 183

 Score =  140 bits (352), Expect = 5e-34
 Identities = 72/106 (67%), Positives = 81/106 (76%), Gaps = 5/106 (4%)

Query: 37  GSGQCGTPPLILFGTESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRW 96
           G  + GT    L  +ESD SKS+KKRDAADKPRGFA GLDPER+IGATD SG+ MFLM+W
Sbjct: 83  GKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKW 142

Query: 97  KDSGEADFMLAKEASMQFSQFHYAWPVIAFYEERLTWHFCPEDETQ 142
           KDS EAD +LAKEA+M+  Q      VIAFYEERLTWH CPEDE Q
Sbjct: 143 KDSDEADLVLAKEANMKCPQI-----VIAFYEERLTWHSCPEDEAQ 183


>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
          Length = 185

 Score =  103 bits (257), Expect = 5e-23
 Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%)

Query: 52  ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111
           + + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+
Sbjct: 94  KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153

Query: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140
           ++  Q      VI+FYEERLTWH  P ++
Sbjct: 154 VKCPQV-----VISFYEERLTWHSYPSED 177


>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
          Length = 185

 Score =  103 bits (257), Expect = 5e-23
 Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%)

Query: 52  ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111
           + + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+
Sbjct: 94  KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153

Query: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140
           ++  Q      VI+FYEERLTWH  P ++
Sbjct: 154 VKCPQV-----VISFYEERLTWHSYPSED 177


>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  100 bits (249), Expect = 4e-22
 Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)

Query: 49  FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107
           F   +D  KS+KKR+ + D  RGF  GL+PE++IGATD  G  MFLM+WKD+ EAD +LA
Sbjct: 94  FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153

Query: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139
           KEA+++  Q      VIAFYEERLTWH  PED
Sbjct: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180


>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  100 bits (249), Expect = 4e-22
 Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)

Query: 49  FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107
           F   +D  KS+KKR+ + D  RGF  GL+PE++IGATD  G  MFLM+WKD+ EAD +LA
Sbjct: 94  FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153

Query: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139
           KEA+++  Q      VIAFYEERLTWH  PED
Sbjct: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180


>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  100 bits (249), Expect = 4e-22
 Identities = 52/92 (56%), Positives = 65/92 (70%), Gaps = 6/92 (6%)

Query: 49  FGTESDVSKSQKKRDAA-DKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLA 107
           F   +D  KS+KKR+ + D  RGF  GL+PE++IGATD  G  MFLM+WKD+ EAD +LA
Sbjct: 94  FSNSADDIKSKKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLA 153

Query: 108 KEASMQFSQFHYAWPVIAFYEERLTWHFCPED 139
           KEA+++  Q      VIAFYEERLTWH  PED
Sbjct: 154 KEANVKCPQI-----VIAFYEERLTWHAYPED 180


>gi|170650674 phosphodiesterase 6A [Homo sapiens]
          Length = 860

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 70  GFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFH 118
           G  T  + E+ + +  G  K  + + ++    +D + AKEA++ FS +H
Sbjct: 2   GEVTAEEVEKFLDSNIGFAKQYYNLHYRAKLISDLLGAKEAAVDFSNYH 50


>gi|25282407 interferon-stimulated transcription factor 3, gamma
           48kDa [Homo sapiens]
          Length = 393

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 85  DGSGKWMFLMRWKDSGEADFMLAKEASMQFSQFHYAWPV 123
           D + K MF + WK +G+ DF   ++A+     F  AW +
Sbjct: 31  DDTAKTMFRIPWKHAGKQDFREDQDAA-----FFKAWAI 64


>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 523

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 57  KSQKKRDAADKPRGFATGLDPERVIGATDGSGKWM 91
           K  KK   A++PRG  +      V GA    G WM
Sbjct: 440 KELKKSGGAEEPRGSESAAAARPVAGAPVPQGAWM 474


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.141    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,967,187
Number of Sequences: 37866
Number of extensions: 250752
Number of successful extensions: 567
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 17
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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