Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239750058
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750058 PREDICTED: similar to hCG40922 [Homo sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750058 PREDICTED: similar to hCG40922 [Homo sapiens] 290 2e-79
gi|239755558 PREDICTED: similar to hCG40922 [Homo sapiens] 288 1e-78
gi|47419920 tryptophanyl-tRNA synthetase isoform b [Homo sapiens] 217 3e-57
gi|47419918 tryptophanyl-tRNA synthetase isoform b [Homo sapiens] 217 3e-57
gi|47419916 tryptophanyl-tRNA synthetase isoform a [Homo sapiens] 217 3e-57
gi|47419914 tryptophanyl-tRNA synthetase isoform a [Homo sapiens] 217 3e-57
gi|33188443 microfilament and actin filament cross-linker protei... 30 0.70
gi|23111055 sorting nexin 7 isoform b [Homo sapiens] 28 2.7
gi|194294540 sorting nexin 7 isoform a [Homo sapiens] 28 2.7
gi|4758648 kinesin family member 5B [Homo sapiens] 28 3.5
gi|67906195 ankyrin repeat and sterile alpha motif domain contai... 28 3.5
gi|197927265 RNA (guanine-9-) methyltransferase domain containin... 27 4.5
gi|197927261 RNA (guanine-9-) methyltransferase domain containin... 27 4.5
gi|22748659 RNA (guanine-9-) methyltransferase domain containing... 27 4.5
gi|4505227 myeloid cell nuclear differentiation antigen [Homo sa... 27 5.9
gi|45238854 basic leucine zipper transcription factor, ATF-like ... 27 7.7
>gi|239750058 PREDICTED: similar to hCG40922 [Homo sapiens]
Length = 144
Score = 290 bits (743), Expect = 2e-79
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MTRDIAPRIGYPKPVLLHSSFFSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS 60
MTRDIAPRIGYPKPVLLHSSFFSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS
Sbjct: 1 MTRDIAPRIGYPKPVLLHSSFFSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS 60
Query: 61 GERDTIEEHRHFGGNCVVDVSFMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVLQ 120
GERDTIEEHRHFGGNCVVDVSFMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVLQ
Sbjct: 61 GERDTIEEHRHFGGNCVVDVSFMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVLQ 120
Query: 121 PVITEHQAQCKEVMDELVKEFTNE 144
PVITEHQAQCKEVMDELVKEFTNE
Sbjct: 121 PVITEHQAQCKEVMDELVKEFTNE 144
>gi|239755558 PREDICTED: similar to hCG40922 [Homo sapiens]
Length = 144
Score = 288 bits (737), Expect = 1e-78
Identities = 143/144 (99%), Positives = 143/144 (99%)
Query: 1 MTRDIAPRIGYPKPVLLHSSFFSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS 60
MTRDIAPRIGYPKPVLLHSS FSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS
Sbjct: 1 MTRDIAPRIGYPKPVLLHSSLFSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS 60
Query: 61 GERDTIEEHRHFGGNCVVDVSFMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVLQ 120
GERDTIEEHRHFGGNCVVDVSFMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVLQ
Sbjct: 61 GERDTIEEHRHFGGNCVVDVSFMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVLQ 120
Query: 121 PVITEHQAQCKEVMDELVKEFTNE 144
PVITEHQAQCKEVMDELVKEFTNE
Sbjct: 121 PVITEHQAQCKEVMDELVKEFTNE 144
>gi|47419920 tryptophanyl-tRNA synthetase isoform b [Homo sapiens]
Length = 430
Score = 217 bits (552), Expect = 3e-57
Identities = 110/142 (77%), Positives = 123/142 (86%), Gaps = 1/142 (0%)
Query: 1 MTRDIAPRIGYPKPVLLHSSFFSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS 60
MTRD+APRIGYPKP LLHS+FF LQG Q KMSASDP+S IFLT+ A QIKTK++KHAFS
Sbjct: 278 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFS 337
Query: 61 GERDTIEEHRHFGGNCVVDVSFMYLT-FLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVL 119
G RDTIEEHR FGGNC VDVSFMYLT FL+D+DKLEQ+RKD TS MLTG+LKK LIEVL
Sbjct: 338 GGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVL 397
Query: 120 QPVITEHQAQCKEVMDELVKEF 141
QP+I EHQA+ KEV DE+VKEF
Sbjct: 398 QPLIAEHQARRKEVTDEIVKEF 419
>gi|47419918 tryptophanyl-tRNA synthetase isoform b [Homo sapiens]
Length = 430
Score = 217 bits (552), Expect = 3e-57
Identities = 110/142 (77%), Positives = 123/142 (86%), Gaps = 1/142 (0%)
Query: 1 MTRDIAPRIGYPKPVLLHSSFFSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS 60
MTRD+APRIGYPKP LLHS+FF LQG Q KMSASDP+S IFLT+ A QIKTK++KHAFS
Sbjct: 278 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFS 337
Query: 61 GERDTIEEHRHFGGNCVVDVSFMYLT-FLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVL 119
G RDTIEEHR FGGNC VDVSFMYLT FL+D+DKLEQ+RKD TS MLTG+LKK LIEVL
Sbjct: 338 GGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVL 397
Query: 120 QPVITEHQAQCKEVMDELVKEF 141
QP+I EHQA+ KEV DE+VKEF
Sbjct: 398 QPLIAEHQARRKEVTDEIVKEF 419
>gi|47419916 tryptophanyl-tRNA synthetase isoform a [Homo sapiens]
Length = 471
Score = 217 bits (552), Expect = 3e-57
Identities = 110/142 (77%), Positives = 123/142 (86%), Gaps = 1/142 (0%)
Query: 1 MTRDIAPRIGYPKPVLLHSSFFSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS 60
MTRD+APRIGYPKP LLHS+FF LQG Q KMSASDP+S IFLT+ A QIKTK++KHAFS
Sbjct: 319 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFS 378
Query: 61 GERDTIEEHRHFGGNCVVDVSFMYLT-FLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVL 119
G RDTIEEHR FGGNC VDVSFMYLT FL+D+DKLEQ+RKD TS MLTG+LKK LIEVL
Sbjct: 379 GGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVL 438
Query: 120 QPVITEHQAQCKEVMDELVKEF 141
QP+I EHQA+ KEV DE+VKEF
Sbjct: 439 QPLIAEHQARRKEVTDEIVKEF 460
>gi|47419914 tryptophanyl-tRNA synthetase isoform a [Homo sapiens]
Length = 471
Score = 217 bits (552), Expect = 3e-57
Identities = 110/142 (77%), Positives = 123/142 (86%), Gaps = 1/142 (0%)
Query: 1 MTRDIAPRIGYPKPVLLHSSFFSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS 60
MTRD+APRIGYPKP LLHS+FF LQG Q KMSASDP+S IFLT+ A QIKTK++KHAFS
Sbjct: 319 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFS 378
Query: 61 GERDTIEEHRHFGGNCVVDVSFMYLT-FLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVL 119
G RDTIEEHR FGGNC VDVSFMYLT FL+D+DKLEQ+RKD TS MLTG+LKK LIEVL
Sbjct: 379 GGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVL 438
Query: 120 QPVITEHQAQCKEVMDELVKEF 141
QP+I EHQA+ KEV DE+VKEF
Sbjct: 439 QPLIAEHQARRKEVTDEIVKEF 460
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 30.0 bits (66), Expect = 0.70
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 14 PVLLHSSFFSDLQGIQNKMSA-SDP--SSFIFLTNMAMQIKTKI-SKH-----------A 58
P L + D + +Q +S+ SD S + N KTK+ ++H A
Sbjct: 1877 PAQLLKALEKDAKNLQKSLSSVSDTWNSRLLHFQNAVEIEKTKVLNQHTQLEGRLQDLRA 1936
Query: 59 FSGERDTIEEHRHFGGNCVVDVSFMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEV 118
+ G ++ I + G N +DV + L + ED + M + D L D++ + E
Sbjct: 1937 WVGNKNLILNSK--GSNSEIDVDSLNLCLQQYEDLKQPMAERKAQLDALAFDIQFFISEH 1994
Query: 119 LQPVITEHQAQCKEVMDELVKEF 141
Q + + Q +++EL + F
Sbjct: 1995 AQDLSPQQNRQMLRLLNELQRSF 2017
>gi|23111055 sorting nexin 7 isoform b [Homo sapiens]
Length = 336
Score = 28.1 bits (61), Expect = 2.7
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 23 SDLQGIQNKMSA-SDPSSFIFLTNMAMQIKTKISKHAFSGERDTIEEHRHFGGNCVVDVS 81
S ++G++N+ + ++FI L + + + KIS+ + ER+ +E + +G
Sbjct: 174 SSMRGVKNRPEEFMEMNNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYG-------P 226
Query: 82 FMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKM---LIEVLQPVITEH 126
L +ED ++ ++ + D +K L E L PV+ E+
Sbjct: 227 IHILWSASEEDLVDTLKDVASCIDRCCKATEKRMSGLSEALLPVVHEY 274
>gi|194294540 sorting nexin 7 isoform a [Homo sapiens]
Length = 451
Score = 28.1 bits (61), Expect = 2.7
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 23 SDLQGIQNKMSA-SDPSSFIFLTNMAMQIKTKISKHAFSGERDTIEEHRHFGGNCVVDVS 81
S ++G++N+ + ++FI L + + + KIS+ + ER+ +E + +G
Sbjct: 238 SSMRGVKNRPEEFMEMNNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYG-------P 290
Query: 82 FMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKM---LIEVLQPVITEH 126
L +ED ++ ++ + D +K L E L PV+ E+
Sbjct: 291 IHILWSASEEDLVDTLKDVASCIDRCCKATEKRMSGLSEALLPVVHEY 338
>gi|4758648 kinesin family member 5B [Homo sapiens]
Length = 963
Score = 27.7 bits (60), Expect = 3.5
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 78 VDVSFMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVLQPVITEHQAQCKEVMDEL 137
VD L L+ ++K+ +M K+ ++ ++K+ + + +Q HQ Q + DE+
Sbjct: 664 VDALSEELVQLRAQEKVHEMEKEHLNKVQTANEVKQAVEQQIQSHRETHQKQISSLRDEV 723
>gi|67906195 ankyrin repeat and sterile alpha motif domain
containing 6 [Homo sapiens]
Length = 871
Score = 27.7 bits (60), Expect = 3.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 102 TSRDMLTGDLKKMLIEVLQPVITEHQ 127
T D LTG LKK+ +E QP+ E +
Sbjct: 773 TDEDELTGILKKLSLEKYQPIFEEQE 798
>gi|197927265 RNA (guanine-9-) methyltransferase domain containing 2
[Homo sapiens]
Length = 339
Score = 27.3 bits (59), Expect = 4.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 77 VVDVSFMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVLQPVITEHQAQCKEVMDE 136
++D SF +L LKD KL + + + + + + +Q +T H Q K+ MDE
Sbjct: 104 IIDCSFDHLMVLKDIKKLHKQIQRCYAEN-------RRALHPVQFYLTSHGGQLKKNMDE 156
Query: 137 LVKEFTN 143
K + N
Sbjct: 157 NDKGWVN 163
>gi|197927261 RNA (guanine-9-) methyltransferase domain containing 2
[Homo sapiens]
Length = 339
Score = 27.3 bits (59), Expect = 4.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 77 VVDVSFMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVLQPVITEHQAQCKEVMDE 136
++D SF +L LKD KL + + + + + + +Q +T H Q K+ MDE
Sbjct: 104 IIDCSFDHLMVLKDIKKLHKQIQRCYAEN-------RRALHPVQFYLTSHGGQLKKNMDE 156
Query: 137 LVKEFTN 143
K + N
Sbjct: 157 NDKGWVN 163
>gi|22748659 RNA (guanine-9-) methyltransferase domain containing 2
[Homo sapiens]
Length = 339
Score = 27.3 bits (59), Expect = 4.5
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 77 VVDVSFMYLTFLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVLQPVITEHQAQCKEVMDE 136
++D SF +L LKD KL + + + + + + +Q +T H Q K+ MDE
Sbjct: 104 IIDCSFDHLMVLKDIKKLHKQIQRCYAEN-------RRALHPVQFYLTSHGGQLKKNMDE 156
Query: 137 LVKEFTN 143
K + N
Sbjct: 157 NDKGWVN 163
>gi|4505227 myeloid cell nuclear differentiation antigen [Homo
sapiens]
Length = 407
Score = 26.9 bits (58), Expect = 5.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 92 DKLEQMRKDDTSRDMLTGDLKKMLIEVLQPVITEHQAQCKEVMDELV 138
DKL ++ KD S L +L+K +V + + T+ +A K++ E V
Sbjct: 63 DKLIELAKDMPSLKNLVNNLRKEKSKVAKKIKTQEKAPVKKINQEEV 109
>gi|45238854 basic leucine zipper transcription factor, ATF-like 2
[Homo sapiens]
Length = 274
Score = 26.6 bits (57), Expect = 7.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 12 PKPVLLHSSFFSDLQGIQNKMSASDPS 38
P P+L S S LQG +K+SA PS
Sbjct: 172 PSPLLFASHTGSSLQGSSSKLSALQPS 198
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,068,697
Number of Sequences: 37866
Number of extensions: 187075
Number of successful extensions: 573
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 16
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.