Guide to the Human Genome
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Name: LOC341112 Sequence: fasta or formatted (144aa) NCBI GI: 239750058
Description:

PREDICTED: similar to hCG40922

Referenced in:

tRNA Enzymes

Other entries for this name:
alt prot [144aa] PREDICTED: similar to hCG40922
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          5           1
 C cysteine            1.4          2           1
 D aspartate           8.3         12           2
 E glutamate           7.6         11           2
 F phenylalanine       6.2          9           2
 G glycine             4.2          6           2
 H histidine           3.5          5           1
 I isoleucine          6.2          9           1
 K lysine              8.3         12           2
 L leucine             8.3         12           2
 M methionine          6.2          9           1
 N asparagine          2.8          4           1
 P proline             3.5          5           1
 Q glutamine           4.9          7           1
 R arginine            4.2          6           1
 S serine              7.6         11           2
 T threonine           6.2          9           1
 V valine              5.6          8           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG40922 
LOC341112             0.992   PREDICTED: similar to hCG40922 
WARS                  0.725   tryptophanyl-tRNA synthetase isoform b 
WARS                  0.725   tryptophanyl-tRNA synthetase isoform b 
WARS                  0.725   tryptophanyl-tRNA synthetase isoform a 
WARS                  0.725   tryptophanyl-tRNA synthetase isoform a 
MACF1                 0.019   microfilament and actin filament cross-linker protei...
SNX7                  0.011   sorting nexin 7 isoform b 
SNX7                  0.011   sorting nexin 7 isoform a 
KIF5B                 0.011   kinesin family member 5B 
ANKS6                 0.011   ankyrin repeat and sterile alpha motif domain contai...
RG9MTD2               0.008   RNA (guanine-9-) methyltransferase domain containin...
RG9MTD2               0.008   RNA (guanine-9-) methyltransferase domain containin...
RG9MTD2               0.008   RNA (guanine-9-) methyltransferase domain containing...
MNDA                  0.008   myeloid cell nuclear differentiation antigen 
BATF2                 0.008   basic leucine zipper transcription factor, ATF-like ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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