Search of human proteins with 117938256

Search of human proteins with 117938256

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]                224   9e-60
gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]              208   6e-55
gi|117938258 tachykinin 4 isoform beta [Homo sapiens]                 177   1e-45
gi|117938260 tachykinin 4 isoform gamma [Homo sapiens]                157   2e-39
gi|117938262 tachykinin 4 isoform delta [Homo sapiens]                131   1e-31
gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]         39   9e-04
gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens]          29   0.70 
gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]         28   1.6  
gi|145580578 C-terminal binding protein 2 isoform 1 [Homo sapiens]     27   3.5  
gi|4557499 C-terminal binding protein 2 isoform 1 [Homo sapiens]       27   3.5  
gi|145580575 C-terminal binding protein 2 isoform 2 [Homo sapiens]     27   3.5  
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa...    27   4.6  
gi|61743967 C-terminal binding protein 1 isoform 2 [Homo sapiens]      26   7.8  
gi|4557497 C-terminal binding protein 1 isoform 1 [Homo sapiens]       26   7.8  
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         26   7.8  
gi|74319833 ubiquitin specific protease 9, Y-linked [Homo sapiens]     26   7.8  
gi|145309311 ubiquitin specific protease 9, X-linked isoform 4 [...    26   7.8  
gi|145309309 ubiquitin specific protease 9, X-linked isoform 3 [...    26   7.8  
gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens]                  26   7.8  

>gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]
          Length = 113

 Score =  224 bits (572), Expect = 9e-60
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKA 60
           MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKA
Sbjct: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKA 60

Query: 61  SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 113
           SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE
Sbjct: 61  SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 113


>gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]
          Length = 107

 Score =  208 bits (530), Expect = 6e-55
 Identities = 107/113 (94%), Positives = 107/113 (94%), Gaps = 6/113 (5%)

Query: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKA 60
           MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW      EGAGPSIQLQLQEVKTGKA
Sbjct: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW------EGAGPSIQLQLQEVKTGKA 54

Query: 61  SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 113
           SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE
Sbjct: 55  SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 107


>gi|117938258 tachykinin 4 isoform beta [Homo sapiens]
          Length = 96

 Score =  177 bits (450), Expect = 1e-45
 Identities = 96/113 (84%), Positives = 96/113 (84%), Gaps = 17/113 (15%)

Query: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKA 60
           MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW      EGAGPSIQLQLQEVKTGKA
Sbjct: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW------EGAGPSIQLQLQEVKTGKA 54

Query: 61  SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 113
           SQFFGLMGKRVG           AYQLEHTFQGLLGKRSLFTEGREDEAQGSE
Sbjct: 55  SQFFGLMGKRVG-----------AYQLEHTFQGLLGKRSLFTEGREDEAQGSE 96


>gi|117938260 tachykinin 4 isoform gamma [Homo sapiens]
          Length = 87

 Score =  157 bits (396), Expect = 2e-39
 Identities = 87/113 (76%), Positives = 87/113 (76%), Gaps = 26/113 (23%)

Query: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKA 60
           MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW      EGAGPSIQLQLQEVKTGKA
Sbjct: 1   MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW------EGAGPSIQLQLQEVKTGKA 54

Query: 61  SQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTEGREDEAQGSE 113
           SQFFGLMGKRVGGRPLIQPRRKK                    GREDEAQGSE
Sbjct: 55  SQFFGLMGKRVGGRPLIQPRRKK--------------------GREDEAQGSE 87


>gi|117938262 tachykinin 4 isoform delta [Homo sapiens]
          Length = 76

 Score =  131 bits (329), Expect = 1e-31
 Identities = 68/74 (91%), Positives = 68/74 (91%), Gaps = 6/74 (8%)

Query: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKA 60
          MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW      EGAGPSIQLQLQEVKTGKA
Sbjct: 1  MLPCLALLLLMELSVCTVAGDGGEEQTLSTEAETW------EGAGPSIQLQLQEVKTGKA 54

Query: 61 SQFFGLMGKRVGGR 74
          SQFFGLMGKRVGGR
Sbjct: 55 SQFFGLMGKRVGGR 68


>gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]
          Length = 114

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 41  EEGAGPSIQLQLQEVKTGKASQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSL 100
           EE   P   L  +  +  K  QFFGLMGKR  G   I  +R K      +F GL+GKR+L
Sbjct: 42  EELPEPFEHLLQRIARRPKPQQFFGLMGKRDAGHGQISHKRHKT----DSFVGLMGKRAL 97

Query: 101 FTEGREDEA 109
            +   E  A
Sbjct: 98  NSVAYERSA 106


>gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens]
          Length = 129

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 19/84 (22%)

Query: 41  EEGAGPSIQLQLQEVKTGKASQFFGLMGKR---------------VGGRPLIQPRRKKAY 85
           EE   P   L  +  +  K  QFFGLMGKR               + G   I  +R K  
Sbjct: 42  EELPEPFEHLLQRIARRPKPQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKT- 100

Query: 86  QLEHTFQGLLGKRSLFTEGREDEA 109
               +F GL+GKR+L +   E  A
Sbjct: 101 ---DSFVGLMGKRALNSVAYERSA 121


>gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]
          Length = 96

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 41 EEGAGPSIQLQLQEVKTGKASQFFGLMGKRVGGRPLIQPRRKKAYQ 86
          EE   P   L  +  +  K  QFFGLMGKR  G   I    K AY+
Sbjct: 42 EELPEPFEHLLQRIARRPKPQQFFGLMGKRDAGHGQIS--HKMAYE 85


>gi|145580578 C-terminal binding protein 2 isoform 1 [Homo sapiens]
          Length = 445

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 13  LSVCTVAGDGGEEQTLST--------EAETWVIVALEEGAGPSIQLQLQEVKTGKA---S 61
           ++VC +     EE   ST           TW+  AL EG       Q++EV +G A    
Sbjct: 121 IAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRG 180

Query: 62  QFFGLMG 68
           +  GL+G
Sbjct: 181 ETLGLIG 187


>gi|4557499 C-terminal binding protein 2 isoform 1 [Homo sapiens]
          Length = 445

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 13  LSVCTVAGDGGEEQTLST--------EAETWVIVALEEGAGPSIQLQLQEVKTGKA---S 61
           ++VC +     EE   ST           TW+  AL EG       Q++EV +G A    
Sbjct: 121 IAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRG 180

Query: 62  QFFGLMG 68
           +  GL+G
Sbjct: 181 ETLGLIG 187


>gi|145580575 C-terminal binding protein 2 isoform 2 [Homo sapiens]
          Length = 985

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 13  LSVCTVAGDGGEEQTLST--------EAETWVIVALEEGAGPSIQLQLQEVKTGKA---S 61
           ++VC +     EE   ST           TW+  AL EG       Q++EV +G A    
Sbjct: 661 IAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRG 720

Query: 62  QFFGLMG 68
           +  GL+G
Sbjct: 721 ETLGLIG 727


>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
           sapiens]
          Length = 1954

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 17/73 (23%)

Query: 41  EEGAGPSIQLQLQEVKTGKASQFFGLMGKRVGGRPLIQPRRKKAYQLEHTFQGLLGKRSL 100
           +EG GP ++ +++  K GK                  + + KK   L+  F G+  KR  
Sbjct: 245 KEGKGPGVRKKIKGSKDGKK-----------------KGKGKKTAGLKFRFGGISNKRKK 287

Query: 101 FTEGREDEAQGSE 113
            +   EDE + S+
Sbjct: 288 GSSSEEDEREESD 300


>gi|61743967 C-terminal binding protein 1 isoform 2 [Homo sapiens]
          Length = 429

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 13  LSVCTVAGDGGEEQTLST--------EAETWVIVALEEGAGPSIQLQLQEVKTGKA---S 61
           ++VC V     EE   ST           TW+  AL EG       Q++EV +G A    
Sbjct: 104 IAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRG 163

Query: 62  QFFGLMG-KRVG 72
           +  G++G  RVG
Sbjct: 164 ETLGIIGLGRVG 175


>gi|4557497 C-terminal binding protein 1 isoform 1 [Homo sapiens]
          Length = 440

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 13  LSVCTVAGDGGEEQTLST--------EAETWVIVALEEGAGPSIQLQLQEVKTGKA---S 61
           ++VC V     EE   ST           TW+  AL EG       Q++EV +G A    
Sbjct: 115 IAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRG 174

Query: 62  QFFGLMG-KRVG 72
           +  G++G  RVG
Sbjct: 175 ETLGIIGLGRVG 186


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 20 GDGGEEQTLSTEAETWVIVALEEGAGPSIQLQLQEVKTGKASQFFGLMGKRVGGRPLIQP 79
          GDG  ++  +     +++ A+++  G S+Q  L   K G  S+  GL  +R    P  +P
Sbjct: 19 GDGPPDRDPTLSPSAFILRAIQQAVGSSLQGDLPNDKDG--SRCHGLRWRRCRS-PRSEP 75

Query: 80 RRKKA 84
          R +++
Sbjct: 76 RSQES 80


>gi|74319833 ubiquitin specific protease 9, Y-linked [Homo sapiens]
          Length = 2555

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 34   TWVIVALEEGAGPSIQLQLQEV 55
            T+++V+L+EG GP I+ Q  E+
Sbjct: 2205 TFMLVSLDEGPGPPIKYQYAEL 2226


>gi|145309311 ubiquitin specific protease 9, X-linked isoform 4 [Homo
            sapiens]
          Length = 2554

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 34   TWVIVALEEGAGPSIQLQLQEV 55
            T+++V+L+EG GP I+ Q  E+
Sbjct: 2204 TFMLVSLDEGPGPPIKYQYAEL 2225


>gi|145309309 ubiquitin specific protease 9, X-linked isoform 3 [Homo
            sapiens]
          Length = 2570

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 34   TWVIVALEEGAGPSIQLQLQEV 55
            T+++V+L+EG GP I+ Q  E+
Sbjct: 2204 TFMLVSLDEGPGPPIKYQYAEL 2225


>gi|71143127 IQ motif and Sec7 domain 3 [Homo sapiens]
          Length = 759

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/32 (40%), Positives = 14/32 (43%)

Query: 80  RRKKAYQLEHTFQGLLGKRSLFTEGREDEAQG 111
           R   AYQL    Q   G   L  EGR  E+ G
Sbjct: 126 RESGAYQLHQALQAAAGPPGLEAEGRAPESAG 157


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,427,367
Number of Sequences: 37866
Number of extensions: 180863
Number of successful extensions: 340
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 20
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.