Search of human proteins with 239748936

Search of human proteins with 239748936

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748936 PREDICTED: hypothetical protein XP_002346862 [Homo
sapiens]
         (115 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754428 PREDICTED: hypothetical protein [Homo sapiens]           238   8e-64
gi|239748936 PREDICTED: hypothetical protein XP_002346862 [Homo ...   238   8e-64
gi|239742958 PREDICTED: hypothetical protein XP_002342705 [Homo ...   238   8e-64
gi|239755715 PREDICTED: similar to hCG2002101 [Homo sapiens]           29   0.70 
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa...    27   3.5  
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s...    27   3.5  
gi|71902540 ataxia telangiectasia mutated isoform 1 [Homo sapiens]     26   5.9  
gi|239756649 PREDICTED: hypothetical protein [Homo sapiens]            26   5.9  
gi|169218268 PREDICTED: similar to Serine-protein kinase ATM, pa...    26   5.9  
gi|38569233 insulin-like 5 precursor [Homo sapiens]                    26   5.9  
gi|40255149 Rho guanine nucleotide exchange factor (GEF) 19 [Hom...    26   5.9  
gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 ...    26   5.9  
gi|157951704 Fanconi anemia core complex 100 kDa subunit isoform...    26   5.9  
gi|157951702 Fanconi anemia core complex 100 kDa subunit isoform...    26   5.9  
gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]          26   7.7  

>gi|239754428 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 115

 Score =  238 bits (607), Expect = 8e-64
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MEASWGGQQLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKS 60
           MEASWGGQQLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKS
Sbjct: 1   MEASWGGQQLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKS 60

Query: 61  SQSWLIRRAQSSSQTCLQVSSAPGQVALAGARGEWVVADQAPVSAAGAELDLKYL 115
           SQSWLIRRAQSSSQTCLQVSSAPGQVALAGARGEWVVADQAPVSAAGAELDLKYL
Sbjct: 61  SQSWLIRRAQSSSQTCLQVSSAPGQVALAGARGEWVVADQAPVSAAGAELDLKYL 115


>gi|239748936 PREDICTED: hypothetical protein XP_002346862 [Homo
           sapiens]
          Length = 115

 Score =  238 bits (607), Expect = 8e-64
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MEASWGGQQLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKS 60
           MEASWGGQQLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKS
Sbjct: 1   MEASWGGQQLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKS 60

Query: 61  SQSWLIRRAQSSSQTCLQVSSAPGQVALAGARGEWVVADQAPVSAAGAELDLKYL 115
           SQSWLIRRAQSSSQTCLQVSSAPGQVALAGARGEWVVADQAPVSAAGAELDLKYL
Sbjct: 61  SQSWLIRRAQSSSQTCLQVSSAPGQVALAGARGEWVVADQAPVSAAGAELDLKYL 115


>gi|239742958 PREDICTED: hypothetical protein XP_002342705 [Homo
           sapiens]
          Length = 115

 Score =  238 bits (607), Expect = 8e-64
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MEASWGGQQLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKS 60
           MEASWGGQQLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKS
Sbjct: 1   MEASWGGQQLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKS 60

Query: 61  SQSWLIRRAQSSSQTCLQVSSAPGQVALAGARGEWVVADQAPVSAAGAELDLKYL 115
           SQSWLIRRAQSSSQTCLQVSSAPGQVALAGARGEWVVADQAPVSAAGAELDLKYL
Sbjct: 61  SQSWLIRRAQSSSQTCLQVSSAPGQVALAGARGEWVVADQAPVSAAGAELDLKYL 115


>gi|239755715 PREDICTED: similar to hCG2002101 [Homo sapiens]
          Length = 201

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 54 DFKRSKSSQSWLIRRAQSSSQTCLQVSSAPGQVAL 88
          DFKR K   S L+   +S+ + CLQ    PG+ AL
Sbjct: 57 DFKRKKPLSSNLVTGKRSAWKPCLQPLLTPGRAAL 91


>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
           sapiens]
          Length = 1843

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 16  LERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKSSQSWLIRRAQSSSQ 74
           ++ +D H+   ++    +  L       +SA   CG P  KR++S Q   +  A + ++
Sbjct: 201 IDERDEHSETIIELSEERDGLHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADAKAK 259


>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
           sapiens]
          Length = 1870

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/59 (22%), Positives = 27/59 (45%)

Query: 16  LERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKSSQSWLIRRAQSSSQ 74
           ++ +D H+   ++    +  L       +SA   CG P  KR++S Q   +  A + ++
Sbjct: 201 IDERDEHSETIIELSEERDGLHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADAKAK 259


>gi|71902540 ataxia telangiectasia mutated isoform 1 [Homo sapiens]
          Length = 3056

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 9   QLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSK 59
           ++ + +WLE   ++   YL      H++ +  +  A     C + D   SK
Sbjct: 158 EISQQQWLELFSVYFRLYLKPSQDVHRVLVARIIHAVTKGCCSQTDGLNSK 208


>gi|239756649 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 318

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 15/44 (34%), Positives = 18/44 (40%)

Query: 65  LIRRAQSSSQTCLQVSSAPGQVALAGARGEWVVADQAPVSAAGA 108
           L RR  + SQ   +V   PG       RGEWV      +S   A
Sbjct: 187 LPRRLPARSQAAGRVRKIPGAAQFFPGRGEWVGGPSRELSRPAA 230


>gi|169218268 PREDICTED: similar to Serine-protein kinase ATM,
          partial [Homo sapiens]
          Length = 2934

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 9  QLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSK 59
          ++ + +WLE   ++   YL      H++ +  +  A     C + D   SK
Sbjct: 36 EISQQQWLELFSVYFRLYLKPSQDVHRVLVARIIHAVTKGCCSQTDGLNSK 86


>gi|38569233 insulin-like 5 precursor [Homo sapiens]
          Length = 135

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 7/32 (21%)

Query: 5   WGGQQLGRDEW-------LERQDIHTSCYLDG 29
           WGGQ    + W       + RQD+ T C  DG
Sbjct: 94  WGGQMPTEELWKSKKHSVMSRQDLQTLCCTDG 125


>gi|40255149 Rho guanine nucleotide exchange factor (GEF) 19 [Homo
           sapiens]
          Length = 802

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 27  LDGGHYKHQLAITALTEASASQW 49
           L G H KHQ  + A TE+   +W
Sbjct: 673 LHGQHMKHQFLLRARTESEKQRW 695


>gi|183396804 Regulation of nuclear pre-mRNA domain containing 2
           [Homo sapiens]
          Length = 1461

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 66  IRRAQSSSQTCLQVSSAPGQVALAGARGEWVVADQAP 102
           +R    SS+ C ++SS+PG       RG    +D++P
Sbjct: 893 VRALLDSSENCDRLSSSPGLFGAFSVRGNEPGSDRSP 929


>gi|157951704 Fanconi anemia core complex 100 kDa subunit isoform a
           [Homo sapiens]
          Length = 730

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 13  DEWLERQDIHTSCYLDGGHYKHQLAITALTEAS 45
           + +L  +D+H  C +  GH+   LAI A  + S
Sbjct: 148 ENFLPDEDVHCDCLVAFGHHGRMLAIKASWDES 180


>gi|157951702 Fanconi anemia core complex 100 kDa subunit isoform b
           [Homo sapiens]
          Length = 881

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 13  DEWLERQDIHTSCYLDGGHYKHQLAITALTEAS 45
           + +L  +D+H  C +  GH+   LAI A  + S
Sbjct: 299 ENFLPDEDVHCDCLVAFGHHGRMLAIKASWDES 331


>gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]
          Length = 432

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 6  GGQQLGRDEWLERQDIHTSCYLDGGHYKHQLAITALTEASASQWCGEPDFKRSKSSQSW 64
          GG  L +D + + QD+                +  L EA +S     PD   S+ SQ W
Sbjct: 22 GGANLSQDGYWQEQDLELG------------TLAPLDEAISSTVWSSPDMLASQDSQPW 68


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.126    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,463,365
Number of Sequences: 37866
Number of extensions: 155183
Number of successful extensions: 465
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 15
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.