Guide to the Human Genome
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Name: LOC100290825 Sequence: fasta or formatted (115aa) NCBI GI: 239748936
Description:

PREDICTED: hypothetical protein XP_002346862

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         15           2
 C cysteine            2.6          3           1
 D aspartate           5.2          6           1
 E glutamate           6.1          7           1
 F phenylalanine       0.9          1           1
 G glycine             8.7         10           2
 H histidine           2.6          3           1
 I isoleucine          2.6          3           1
 K lysine              3.5          4           1
 L leucine             9.6         11           1
 M methionine          0.9          1           1
 N asparagine          0.0          0           0
 P proline             2.6          3           1
 Q glutamine           9.6         11           2
 R arginine            5.2          6           2
 S serine             12.2         14           3
 T threonine           3.5          4           1
 V valine              4.3          5           2
 W tryptophan          4.3          5           1
 Y tyrosine            2.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346862 
LOC100293397          1.000   PREDICTED: hypothetical protein 
LOC100287481          1.000   PREDICTED: hypothetical protein XP_002342705 
LOC100292599          0.019   PREDICTED: similar to hCG2002101 
CCDC88A               0.009   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.009   coiled-coil domain containing 88A isoform 1 
ATM                   0.005   ataxia telangiectasia mutated isoform 1 
LOC100293879          0.005   PREDICTED: hypothetical protein 
LOC651610             0.005   PREDICTED: similar to Serine-protein kinase ATM, pa...
INSL5                 0.005   insulin-like 5 precursor 
ARHGEF19              0.005   Rho guanine nucleotide exchange factor (GEF) 19 [Hom...
RPRD2                 0.005   Regulation of nuclear pre-mRNA domain containing 2 ...
C17orf70              0.005   Fanconi anemia core complex 100 kDa subunit isoform...
C17orf70              0.005   Fanconi anemia core complex 100 kDa subunit isoform...
CADM3                 0.005   cell adhesion molecule 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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