Search of human proteins with 239748711

Search of human proteins with 239748711

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748711 PREDICTED: hypothetical protein LOC643201 [Homo
sapiens]
         (77 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748711 PREDICTED: hypothetical protein LOC643201 [Homo sap...   152   6e-38
gi|50811889 centrosomal protein 192kDa [Homo sapiens]                  85   1e-17
gi|91105174 CD19 antigen [Homo sapiens]                                29   0.71 
gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens]            29   0.93 
gi|109150407 kelch-like 6 [Homo sapiens]                               28   1.2  
gi|219689123 pleckstrin homology domain containing, family A mem...    27   3.5  
gi|19923493 pleckstrin homology domain containing, family A memb...    27   3.5  
gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo ...    27   4.6  
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]           27   4.6  
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]           27   4.6  
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s...    27   4.6  
gi|50363228 RAB11 family interacting protein 1 isoform 1 [Homo s...    27   4.6  
gi|94536743 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B [Ho...    27   4.6  
gi|22749373 coiled-coil domain containing 111 [Homo sapiens]           26   6.0  
gi|150417981 glucocorticoid receptor DNA binding factor 1 [Homo ...    26   7.9  
gi|189181750 human immunodeficiency virus type I enhancer bindin...    26   7.9  
gi|116089331 human immunodeficiency virus type I enhancer bindin...    26   7.9  

>gi|239748711 PREDICTED: hypothetical protein LOC643201 [Homo
          sapiens]
          Length = 77

 Score =  152 bits (384), Expect = 6e-38
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1  MTATTSLSSKPKDVKPNLRSSEDPSSKSGDLLEPSEVDWTSDLKKVDRIGLALLSKSGLS 60
          MTATTSLSSKPKDVKPNLRSSEDPSSKSGDLLEPSEVDWTSDLKKVDRIGLALLSKSGLS
Sbjct: 1  MTATTSLSSKPKDVKPNLRSSEDPSSKSGDLLEPSEVDWTSDLKKVDRIGLALLSKSGLS 60

Query: 61 RQTGSAAHTSLCPARRL 77
          RQTGSAAHTSLCPARRL
Sbjct: 61 RQTGSAAHTSLCPARRL 77


>gi|50811889 centrosomal protein 192kDa [Homo sapiens]
          Length = 1941

 Score = 84.7 bits (208), Expect = 1e-17
 Identities = 47/72 (65%), Positives = 56/72 (77%), Gaps = 1/72 (1%)

Query: 2   TATTSLSSKPKDVKPNLRSSEDPSSKSGDLLEPSEVDWTSDLKKVDRIGLALLSKSGLSR 61
           T TTSLSSKP+ VKP+ R S+DPSSKSG+LLE SEV WTS+ +++D I LALL KSGLS 
Sbjct: 522 TETTSLSSKPEYVKPDFRWSKDPSSKSGNLLETSEVGWTSNPEELDPIRLALLGKSGLSC 581

Query: 62  QTGSA-AHTSLC 72
           Q GSA +H   C
Sbjct: 582 QVGSATSHPVSC 593


>gi|91105174 CD19 antigen [Homo sapiens]
          Length = 556

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 19  RSSEDPSSKSGDLLEPSEVDWTSDLKKV 46
           RSSE PSS SG L+ P    W  D  ++
Sbjct: 139 RSSEGPSSPSGKLMSPKLYVWAKDRPEI 166


>gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens]
          Length = 1444

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 6    SLSSKPKDVKPNLRSSEDPSSKSGDLLEPSEVDWTSDLK 44
            S SS    V+P  RS E PSS SG   +P++ D  S L+
Sbjct: 1218 SQSSGENGVQPLERSQEGPSSTSGTTQKPAKDDSPSSLE 1256


>gi|109150407 kelch-like 6 [Homo sapiens]
          Length = 621

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 16 PNLRSSEDPSSKSGDLLEPSEVDWTSDLKKVDRIGLALLSKSGLS--RQTGSAAHTSLC 72
          P   S+++PS K+GDL+E        +  K D  GL+L+ ++GL   R   +     LC
Sbjct: 23 PLAPSTDEPSQKTGDLVE----ILNGEKVKFDDAGLSLILQNGLETLRMENALTDVILC 77


>gi|219689123 pleckstrin homology domain containing, family A member
           5 isoform 2 [Homo sapiens]
          Length = 1105

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 10  KPKDVKPNLRSSEDPSSKSGDL--LEPSEVDWTSDLKKVDRIGLALL 54
           +  DVKP+    E P+++   L   EP  VD++ +LKK + I   +L
Sbjct: 953 RENDVKPD---HETPATEIVQLKETEPQNVDFSKELKKTENISYEML 996


>gi|19923493 pleckstrin homology domain containing, family A member 5
            isoform 1 [Homo sapiens]
          Length = 1116

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 10   KPKDVKPNLRSSEDPSSKSGDL--LEPSEVDWTSDLKKVDRIGLALL 54
            +  DVKP+    E P+++   L   EP  VD++ +LKK + I   +L
Sbjct: 964  RENDVKPD---HETPATEIVQLKETEPQNVDFSKELKKTENISYEML 1007


>gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo
           sapiens]
          Length = 1158

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 7   LSSKPKDVKPNLRSSEDPSSKSGDLLEPSEV 37
           L++KPKDVKP L   + PS+ +    +P ++
Sbjct: 676 LTTKPKDVKPILPMPKGPSAPASGEEQPLDL 706


>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
          Length = 1256

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 7   LSSKPKDVKPNLRSSEDPSSKSGDLLEPSEV 37
           L++KPKDVKP L   + PS+ +    +P ++
Sbjct: 775 LTTKPKDVKPILPMPKGPSAPASGEEQPLDL 805


>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
          Length = 1275

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 7   LSSKPKDVKPNLRSSEDPSSKSGDLLEPSEV 37
           L++KPKDVKP L   + PS+ +    +P ++
Sbjct: 775 LTTKPKDVKPILPMPKGPSAPASGEEQPLDL 805


>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
           sapiens]
          Length = 1283

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 21  SEDPSSKSGDLLEPSEVDWTSDLKKVDRIGLALLSKSGLS 60
           +ED SS + D++       T DLK+++++   L  K GLS
Sbjct: 262 NEDESSSASDVMSHKRTAST-DLKQLNQVNFTLPKKEGLS 300


>gi|50363228 RAB11 family interacting protein 1 isoform 1 [Homo
           sapiens]
          Length = 649

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 21  SEDPSSKSGDLLEPSEVDWTSDLKKVDRIGLALLSKSGLS 60
           +ED SS + D++       T DLK+++++   L  K GLS
Sbjct: 262 NEDESSSASDVMSHKRTAST-DLKQLNQVNFTLPKKEGLS 300


>gi|94536743 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B [Homo
           sapiens]
          Length = 861

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)

Query: 28  SGDLLEPSEVDWTSDLKKVDRIGLALLSKSGLSRQTGSAA 67
           +GDL+ P++VD  SD           LSK GL ++ GS A
Sbjct: 705 TGDLMPPNQVDSLSD-------DFTSLSKDGLIQKPGSNA 737


>gi|22749373 coiled-coil domain containing 111 [Homo sapiens]
          Length = 560

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 35  SEVDWTSDLKKVDRIGLALLSKSGLS 60
           +E  WTS+ KK++R+G A  S   LS
Sbjct: 239 TEESWTSNSKKLERLGSAEQSSPDLS 264


>gi|150417981 glucocorticoid receptor DNA binding factor 1 [Homo
           sapiens]
          Length = 1499

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 28  SGDLLEPSEVDWTSDLK--KVDRIGLALLSKSGLSRQ 62
           S   + PS+ +  + L    +DRI L +L K GL+R+
Sbjct: 575 SSRFIRPSDRNQKNSLSDPNIDRINLVILGKDGLARE 611


>gi|189181750 human immunodeficiency virus type I enhancer binding
           protein 3 b [Homo sapiens]
          Length = 2405

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 20  SSEDPSSKSGDLLEPSEVDWTSDLKK 45
           SS+D +SK  D +EP E + T   KK
Sbjct: 609 SSKDTASKPSDEVEPKESELTKKTKK 634


>gi|116089331 human immunodeficiency virus type I enhancer binding
           protein 3 [Homo sapiens]
          Length = 2406

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 20  SSEDPSSKSGDLLEPSEVDWTSDLKK 45
           SS+D +SK  D +EP E + T   KK
Sbjct: 609 SSKDTASKPSDEVEPKESELTKKTKK 634


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.306    0.122    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,833,955
Number of Sequences: 37866
Number of extensions: 97129
Number of successful extensions: 303
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 17
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.