Guide to the Human Genome
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Search of human proteins with 239748615

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748615 PREDICTED: similar to hCG39609 [Homo sapiens]
         (183 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169168320 PREDICTED: similar to hCG39609 [Homo sapiens]            375   e-104
gi|239748615 PREDICTED: similar to hCG39609 [Homo sapiens]            375   e-104
gi|239742640 PREDICTED: similar to hCG39609 [Homo sapiens]            375   e-104
gi|10801345 eukaryotic translation initiation factor 3, subunit ...   268   2e-72
gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]                  28   4.4  
gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]                  28   4.4  
gi|157151767 FKSG83 [Homo sapiens]                                     28   4.4  
gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens]    28   5.7  
gi|55743157 WD repeat domain 33 isoform 2 [Homo sapiens]               27   7.5  
gi|222352168 hypothetical protein LOC389161 [Homo sapiens]             27   9.8  
gi|222144244 fibroblast growth factor receptor 2 isoform 9 precu...    27   9.8  
gi|222144231 fibroblast growth factor receptor 2 isoform 3 precu...    27   9.8  
gi|222144237 fibroblast growth factor receptor 2 isoform 6 precu...    27   9.8  
gi|222144235 fibroblast growth factor receptor 2 isoform 5 precu...    27   9.8  
gi|222144233 fibroblast growth factor receptor 2 isoform 4 precu...    27   9.8  
gi|221316639 fibroblast growth factor receptor 2 isoform 1 precu...    27   9.8  
gi|221316638 fibroblast growth factor receptor 2 isoform 2 precu...    27   9.8  

>gi|169168320 PREDICTED: similar to hCG39609 [Homo sapiens]
          Length = 183

 Score =  375 bits (963), Expect = e-104
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
           MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF
Sbjct: 1   MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60

Query: 61  FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120
           FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH
Sbjct: 61  FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120

Query: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180
           WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA
Sbjct: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180

Query: 181 FFQ 183
           FFQ
Sbjct: 181 FFQ 183


>gi|239748615 PREDICTED: similar to hCG39609 [Homo sapiens]
          Length = 183

 Score =  375 bits (963), Expect = e-104
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
           MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF
Sbjct: 1   MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60

Query: 61  FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120
           FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH
Sbjct: 61  FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120

Query: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180
           WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA
Sbjct: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180

Query: 181 FFQ 183
           FFQ
Sbjct: 181 FFQ 183


>gi|239742640 PREDICTED: similar to hCG39609 [Homo sapiens]
          Length = 183

 Score =  375 bits (963), Expect = e-104
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
           MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF
Sbjct: 1   MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60

Query: 61  FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120
           FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH
Sbjct: 61  FQTTDTAQIQLKALTNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQHIDH 120

Query: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180
           WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA
Sbjct: 121 WLLAEMPGYLSDSQLKVWMRKYTWRADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMA 180

Query: 181 FFQ 183
           FFQ
Sbjct: 181 FFQ 183


>gi|10801345 eukaryotic translation initiation factor 3, subunit 12
           [Homo sapiens]
          Length = 218

 Score =  268 bits (685), Expect = 2e-72
 Identities = 148/218 (67%), Positives = 156/218 (71%), Gaps = 35/218 (16%)

Query: 1   MVIFEQMRANVGMLLQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVF 60
           M +FEQMRANVG LL+GI+R NPE LATLE YVE QAK+ AYDLEAN  VLKLYQ NP F
Sbjct: 1   MAMFEQMRANVGKLLKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAF 60

Query: 61  FQTTDTAQIQLKALTNLPHTNFT-----------------------------------PS 85
           FQTT TAQI LKALTNLPHT+FT                                    +
Sbjct: 61  FQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQA 120

Query: 86  LDENVDLLEGITGFEDSVRMCICPVVGITYQHIDHWLLAEMPGYLSDSQLKVWMRKYTWR 145
           LDEN+DLLEGITGFEDSVR  IC VVGITYQHID WLLAEM G LSDSQLKVWM KY W 
Sbjct: 121 LDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWS 180

Query: 146 ADESQQIFICSQEENIKPKNPVEKIDFDSVSSIMAFFQ 183
           ADES QIFICSQEE+IKPKN VEKIDFDSVSSIMA  Q
Sbjct: 181 ADESGQIFICSQEESIKPKNIVEKIDFDSVSSIMASSQ 218


>gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]
          Length = 1726

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 113  ITYQHIDHWLLAEMPGYLSDSQLKVWMR---KYTWRADESQQIFICSQ 157
            +T Q +D W   +   ++ D +L+++     K  W+  E +QI +CSQ
Sbjct: 1358 LTMQLVD-WHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQ 1404


>gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]
          Length = 1800

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 113  ITYQHIDHWLLAEMPGYLSDSQLKVWMR---KYTWRADESQQIFICSQ 157
            +T Q +D W   +   ++ D +L+++     K  W+  E +QI +CSQ
Sbjct: 1358 LTMQLVD-WHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQ 1404


>gi|157151767 FKSG83 [Homo sapiens]
          Length = 189

 Score = 28.1 bits (61), Expect = 4.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 75  TNLPHTNFTPSLDENVDLLEGITGFEDSVRMCICPVVGITYQH 117
           TN+  + +  S+ EN  +LE IT F  S    IC ++ I Y +
Sbjct: 106 TNVCLSTYISSMYENSLILENITSFVSSSYPIICTLILINYDN 148


>gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens]
          Length = 502

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 149 SQQIFICSQEENIKPKNPVEKIDFDSVSSIMAF 181
           S+ IF C QE+ IK  NP      D + S+M F
Sbjct: 230 SEPIFHCRQED-IKTSNPFHHDQLDRIFSVMGF 261


>gi|55743157 WD repeat domain 33 isoform 2 [Homo sapiens]
          Length = 326

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 13/90 (14%)

Query: 92  LLEGIT-GFEDSVRMCICPVVGITYQHIDHWLL-AEMPGYLSDSQLKVWMRKYTWRADES 149
           L  G+T  FE  ++    PV  +T+ H D W+L A+  GY+          KY W+++ +
Sbjct: 145 LWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYV----------KY-WQSNMN 193

Query: 150 QQIFICSQEENIKPKNPVEKIDFDSVSSIM 179
                 + +E I+    +  I F  V  +M
Sbjct: 194 NVKMFQAHKEAIREARFIHNIPFSVVPIVM 223


>gi|222352168 hypothetical protein LOC389161 [Homo sapiens]
          Length = 544

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 15  LQGINRNNPEKLATLECYVEMQAKDTAYDLEANPVVLKLYQSNPVFFQTTDTAQIQLKAL 74
           LQ   + N +K+       E   K+T       P V ++  S+P FF  T +A   LK+ 
Sbjct: 419 LQKHQQQNQKKITATARKKEKLIKNTYLPQVPLPPVSRVGYSHPSFFYATPSADFLLKSS 478

Query: 75  TN--LPHTNFTP 84
            +  L H+  TP
Sbjct: 479 FSSFLEHSGKTP 490


>gi|222144244 fibroblast growth factor receptor 2 isoform 9
           precursor [Homo sapiens]
          Length = 680

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 43  DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
           D  + P V KL +  P+  Q T +A+      +N P    T  L    D  +L G++ +E
Sbjct: 320 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 379


>gi|222144231 fibroblast growth factor receptor 2 isoform 3
           precursor [Homo sapiens]
          Length = 769

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 43  DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
           D  + P V KL +  P+  Q T +A+      +N P    T  L    D  +L G++ +E
Sbjct: 409 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 468


>gi|222144237 fibroblast growth factor receptor 2 isoform 6
           precursor [Homo sapiens]
          Length = 706

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 43  DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
           D  + P V KL +  P+  Q T +A+      +N P    T  L    D  +L G++ +E
Sbjct: 293 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 352


>gi|222144235 fibroblast growth factor receptor 2 isoform 5
           precursor [Homo sapiens]
          Length = 707

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 43  DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
           D  + P V KL +  P+  Q T +A+      +N P    T  L    D  +L G++ +E
Sbjct: 319 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 378


>gi|222144233 fibroblast growth factor receptor 2 isoform 4
           precursor [Homo sapiens]
          Length = 709

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 43  DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
           D  + P V KL +  P+  Q T +A+      +N P    T  L    D  +L G++ +E
Sbjct: 296 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 355


>gi|221316639 fibroblast growth factor receptor 2 isoform 1
           precursor [Homo sapiens]
          Length = 821

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 43  DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
           D  + P V KL +  P+  Q T +A+      +N P    T  L    D  +L G++ +E
Sbjct: 408 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 467


>gi|221316638 fibroblast growth factor receptor 2 isoform 2
           precursor [Homo sapiens]
          Length = 822

 Score = 26.9 bits (58), Expect = 9.8
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 43  DLEANPVVLKLYQSNPVFFQTTDTAQIQLKALTNLPHTNFTPSLDENVD--LLEGITGFE 100
           D  + P V KL +  P+  Q T +A+      +N P    T  L    D  +L G++ +E
Sbjct: 409 DFSSQPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPMLAGVSEYE 468


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,647,525
Number of Sequences: 37866
Number of extensions: 272069
Number of successful extensions: 615
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 19
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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