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Search of human proteins with 239748474
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit
2 [Homo sapiens]
(64 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit ... 125 7e-30
gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit ... 125 7e-30
gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo ... 125 7e-30
gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit ... 100 3e-22
gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit ... 100 3e-22
gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo ... 100 3e-22
gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo ... 100 3e-22
gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo ... 100 3e-22
gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo ... 100 3e-22
gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ... 99 9e-22
gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ... 99 9e-22
gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ... 99 9e-22
gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit ... 91 3e-19
gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo ... 91 3e-19
gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo ... 91 3e-19
gi|251831110 cytochrome c oxidase subunit II [Homo sapiens] 85 1e-17
gi|196123582 cytochrome c oxidase subunit II [Homo sapiens neand... 84 2e-17
gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit ... 83 4e-17
gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo ... 83 4e-17
gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo ... 76 7e-15
gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo ... 76 7e-15
gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo ... 76 7e-15
gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo ... 74 2e-14
gi|239747883 PREDICTED: hypothetical protein [Homo sapiens] 72 1e-13
gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo ... 72 1e-13
gi|239757854 PREDICTED: hypothetical protein [Homo sapiens] 68 2e-12
gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit ... 67 2e-12
gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo ... 67 2e-12
gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo ... 67 2e-12
gi|157041233 solute carrier family 16 (monocarboxylic acid trans... 26 7.8
>gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 125 bits (314), Expect = 7e-30
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE
Sbjct: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
Query: 61 IQTV 64
IQTV
Sbjct: 61 IQTV 64
>gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 125 bits (314), Expect = 7e-30
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE
Sbjct: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
Query: 61 IQTV 64
IQTV
Sbjct: 61 IQTV 64
>gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo
sapiens]
Length = 64
Score = 125 bits (314), Expect = 7e-30
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE
Sbjct: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
Query: 61 IQTV 64
IQTV
Sbjct: 61 IQTV 64
>gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 100 bits (248), Expect = 3e-22
Identities = 52/64 (81%), Positives = 55/64 (85%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAH VQLGLQD T I+EELLTFH H LIII LIS LVLY+ISLI TTKLTHTSTIDAQE
Sbjct: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60
Query: 61 IQTV 64
I+TV
Sbjct: 61 IKTV 64
>gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 100 bits (248), Expect = 3e-22
Identities = 53/64 (82%), Positives = 56/64 (87%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MA+ VQLGLQDTT I+EELLTFHDH LIIIFLIS LVL IISLI TTKLTHT TIDAQE
Sbjct: 1 MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60
Query: 61 IQTV 64
I+TV
Sbjct: 61 IETV 64
>gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo
sapiens]
Length = 64
Score = 100 bits (248), Expect = 3e-22
Identities = 52/64 (81%), Positives = 55/64 (85%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAH VQLGLQD T I+EELLTFH H LIII LIS LVLY+ISLI TTKLTHTSTIDAQE
Sbjct: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60
Query: 61 IQTV 64
I+TV
Sbjct: 61 IKTV 64
>gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo
sapiens]
Length = 64
Score = 100 bits (248), Expect = 3e-22
Identities = 53/64 (82%), Positives = 56/64 (87%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MA+ VQLGLQDTT I+EELLTFHDH LIIIFLIS LVL IISLI TTKLTHT TIDAQE
Sbjct: 1 MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60
Query: 61 IQTV 64
I+TV
Sbjct: 61 IETV 64
>gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo
sapiens]
Length = 64
Score = 100 bits (248), Expect = 3e-22
Identities = 52/64 (81%), Positives = 55/64 (85%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAH VQLGLQD T I+EELLTFH H LIII LIS LVLY+ISLI TTKLTHTSTIDAQE
Sbjct: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60
Query: 61 IQTV 64
I+TV
Sbjct: 61 IKTV 64
>gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo
sapiens]
Length = 64
Score = 100 bits (248), Expect = 3e-22
Identities = 53/64 (82%), Positives = 56/64 (87%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MA+ VQLGLQDTT I+EELLTFHDH LIIIFLIS LVL IISLI TTKLTHT TIDAQE
Sbjct: 1 MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60
Query: 61 IQTV 64
I+TV
Sbjct: 61 IETV 64
>gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 64
Score = 98.6 bits (244), Expect = 9e-22
Identities = 51/64 (79%), Positives = 54/64 (84%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAH QLGLQD T I+EELL FHDHTLIIIFLIS LVLYIISLI TTKL HTST DAQE
Sbjct: 1 MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60
Query: 61 IQTV 64
++TV
Sbjct: 61 VETV 64
>gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo
sapiens]
Length = 64
Score = 98.6 bits (244), Expect = 9e-22
Identities = 51/64 (79%), Positives = 54/64 (84%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAH QLGLQD T I+EELL FHDHTLIIIFLIS LVLYIISLI TTKL HTST DAQE
Sbjct: 1 MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60
Query: 61 IQTV 64
++TV
Sbjct: 61 VETV 64
>gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo
sapiens]
Length = 64
Score = 98.6 bits (244), Expect = 9e-22
Identities = 51/64 (79%), Positives = 54/64 (84%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAH QLGLQD T I+EELL FHDHTLIIIFLIS LVLYIISLI TTKL HTST DAQE
Sbjct: 1 MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60
Query: 61 IQTV 64
++TV
Sbjct: 61 VETV 64
>gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 64
Score = 90.5 bits (223), Expect = 3e-19
Identities = 48/64 (75%), Positives = 50/64 (78%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAH VQLGLQD I+EELLTFHDH LIIIFLIS LVLY ISLI T LTH S I AQE
Sbjct: 1 MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
Query: 61 IQTV 64
I+TV
Sbjct: 61 IETV 64
>gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo
sapiens]
Length = 64
Score = 90.5 bits (223), Expect = 3e-19
Identities = 48/64 (75%), Positives = 50/64 (78%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAH VQLGLQD I+EELLTFHDH LIIIFLIS LVLY ISLI T LTH S I AQE
Sbjct: 1 MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
Query: 61 IQTV 64
I+TV
Sbjct: 61 IETV 64
>gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo
sapiens]
Length = 64
Score = 90.5 bits (223), Expect = 3e-19
Identities = 48/64 (75%), Positives = 50/64 (78%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAH VQLGLQD I+EELLTFHDH LIIIFLIS LVLY ISLI T LTH S I AQE
Sbjct: 1 MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
Query: 61 IQTV 64
I+TV
Sbjct: 61 IETV 64
>gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]
Length = 227
Score = 85.1 bits (209), Expect = 1e-17
Identities = 43/64 (67%), Positives = 51/64 (79%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAHA Q+GLQD T IMEEL+TFHDH L+IIFLI LVLY + L TTKLT+T+ DAQE
Sbjct: 1 MAHAAQVGLQDATSPIMEELITFHDHALMIIFLICFLVLYALFLTLTTKLTNTNISDAQE 60
Query: 61 IQTV 64
++TV
Sbjct: 61 METV 64
>gi|196123582 cytochrome c oxidase subunit II [Homo sapiens
neanderthalensis]
Length = 227
Score = 84.0 bits (206), Expect = 2e-17
Identities = 43/64 (67%), Positives = 50/64 (78%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAHA Q+GLQD T IMEEL+ FHDH L+IIFLI LVLY + L TTKLT+TS DAQE
Sbjct: 1 MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60
Query: 61 IQTV 64
++TV
Sbjct: 61 METV 64
>gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 83.2 bits (204), Expect = 4e-17
Identities = 43/64 (67%), Positives = 49/64 (76%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAHA Q+GLQD T I+EEL+ FHDH LIIIFLI LVLY + L TTKLT+TS D QE
Sbjct: 1 MAHAAQVGLQDATSPIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQE 60
Query: 61 IQTV 64
I+TV
Sbjct: 61 IETV 64
>gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo
sapiens]
Length = 64
Score = 83.2 bits (204), Expect = 4e-17
Identities = 43/64 (67%), Positives = 49/64 (76%)
Query: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60
MAHA Q+GLQD T I+EEL+ FHDH LIIIFLI LVLY + L TTKLT+TS D QE
Sbjct: 1 MAHAAQVGLQDATSPIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQE 60
Query: 61 IQTV 64
I+TV
Sbjct: 61 IETV 64
>gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo
sapiens]
Length = 53
Score = 75.9 bits (185), Expect = 7e-15
Identities = 39/46 (84%), Positives = 41/46 (89%)
Query: 19 ELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
+LLTFHDH LIIIFLIS LVLYIISLI TTKLTHTST AQEI+TV
Sbjct: 8 KLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo
sapiens]
Length = 53
Score = 75.9 bits (185), Expect = 7e-15
Identities = 39/46 (84%), Positives = 41/46 (89%)
Query: 19 ELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
+LLTFHDH LIIIFLIS LVLYIISLI TTKLTHTST AQEI+TV
Sbjct: 8 KLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo
sapiens]
Length = 53
Score = 75.9 bits (185), Expect = 7e-15
Identities = 39/46 (84%), Positives = 41/46 (89%)
Query: 19 ELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
+LLTFHDH LIIIFLIS LVLYIISLI TTKLTHTST AQEI+TV
Sbjct: 8 KLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo
sapiens]
Length = 415
Score = 74.3 bits (181), Expect = 2e-14
Identities = 37/57 (64%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 8 GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
G+ F + +E+ TFHDHTL+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV
Sbjct: 360 GVNGQVFQLRDEI-TFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
>gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 72.0 bits (175), Expect = 1e-13
Identities = 36/57 (63%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 8 GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
G+ F + +E+ TFHDH L+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV
Sbjct: 190 GVNGQVFQLRDEI-TFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
>gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo
sapiens]
Length = 433
Score = 72.0 bits (175), Expect = 1e-13
Identities = 36/57 (63%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 8 GLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
G+ F + +E+ TFHDH L+I+FLIS LVLY+ISLI T KLT+ STIDAQEI+TV
Sbjct: 378 GVNGQVFQLRDEI-TFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 433
>gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 67.8 bits (164), Expect = 2e-12
Identities = 35/48 (72%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 19 ELLTFHDHTLIIIFLISPLVLYIISL---IFTTKLTHTSTIDAQEIQT 63
ELL FH HTL+IIFLIS LV YIISL I TTKLTHTST+D QE++T
Sbjct: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
>gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 63
Score = 67.4 bits (163), Expect = 2e-12
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 16 IMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
I+EEL+ FHDH LIIIFLIS LVLY++ L TTKL +TS DAQE++TV
Sbjct: 8 IIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
>gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo
sapiens]
Length = 63
Score = 67.4 bits (163), Expect = 2e-12
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 16 IMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
I+EEL+ FHDH LIIIFLIS LVLY++ L TTKL +TS DAQE++TV
Sbjct: 8 IIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
>gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo
sapiens]
Length = 63
Score = 67.4 bits (163), Expect = 2e-12
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 16 IMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
I+EEL+ FHDH LIIIFLIS LVLY++ L TTKL +TS DAQE++TV
Sbjct: 8 IIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
>gi|157041233 solute carrier family 16 (monocarboxylic acid
transporters), member 12 [Homo sapiens]
Length = 486
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 10 QDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTH 52
Q+ +FL+M + + L + + SPL +Y++ + ++H
Sbjct: 243 QEYSFLLMSDFVVLAVSVLFMAYGCSPLFVYLVPYALSVGVSH 285
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.141 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,776,199
Number of Sequences: 37866
Number of extensions: 46506
Number of successful extensions: 151
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 30
length of query: 64
length of database: 18,247,518
effective HSP length: 37
effective length of query: 27
effective length of database: 16,846,476
effective search space: 454854852
effective search space used: 454854852
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.