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Search of human proteins with 239748342
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748342 PREDICTED: hypothetical protein XP_002346640 [Homo
sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753782 PREDICTED: hypothetical protein XP_002345774 [Homo ... 246 4e-66
gi|239748342 PREDICTED: hypothetical protein XP_002346640 [Homo ... 246 4e-66
gi|169636439 cholesteryl ester transfer protein, plasma precurso... 31 0.24
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 30 0.31
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 30 0.31
gi|169166962 PREDICTED: similar to COMM domain containing 5 [Hom... 30 0.53
gi|169166771 PREDICTED: similar to COMM domain containing 5 [Hom... 30 0.53
gi|169166418 PREDICTED: similar to COMM domain containing 5 [Hom... 30 0.53
gi|9506615 protein arginine methyltransferase 7 [Homo sapiens] 28 2.0
gi|7662058 tectonin beta-propeller repeat containing 2 [Homo sap... 28 2.0
gi|40804761 nanos homolog 1 [Homo sapiens] 27 2.6
gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens] 27 2.6
gi|56676337 transmembrane protein 28 [Homo sapiens] 27 3.5
gi|6912330 deafness locus associated putative guanine nucleotide... 27 4.5
gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens] 26 5.9
gi|24307871 kidney predominant protein NCU-G1 [Homo sapiens] 26 7.7
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 26 7.7
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 26 7.7
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 26 7.7
>gi|239753782 PREDICTED: hypothetical protein XP_002345774 [Homo
sapiens]
Length = 118
Score = 246 bits (627), Expect = 4e-66
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ 60
MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ
Sbjct: 1 MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ 60
Query: 61 CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP 118
CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP
Sbjct: 61 CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP 118
>gi|239748342 PREDICTED: hypothetical protein XP_002346640 [Homo
sapiens]
Length = 118
Score = 246 bits (627), Expect = 4e-66
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ 60
MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ
Sbjct: 1 MAATTLRTAALAGNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQ 60
Query: 61 CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP 118
CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP
Sbjct: 61 CGEAAAQLRPLWGCQALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQLLPWASVSP 118
>gi|169636439 cholesteryl ester transfer protein, plasma precursor
[Homo sapiens]
Length = 493
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 1 MAATTLRTAALAGNLEGCSRGGTGQAGI 28
M A T+ T AL GN CS+G + +AGI
Sbjct: 1 MLAATVLTLALLGNAHACSKGTSHEAGI 28
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 30.4 bits (67), Expect = 0.31
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 42 AAATHEGVELWSQQGLRPQCGEAAAQL-RPLWGCQALLWGPLEAGFC 87
A THE L + R + G+AAAQ+ R WG +A L G G C
Sbjct: 370 AVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKC 416
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 30.4 bits (67), Expect = 0.31
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 42 AAATHEGVELWSQQGLRPQCGEAAAQL-RPLWGCQALLWGPLEAGFC 87
A THE L + R + G+AAAQ+ R WG +A L G G C
Sbjct: 370 AVTTHERAHLDREGEARARLGQAAAQMRREGWGARAKLGGRGVCGKC 416
>gi|169166962 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 67 QLRPLWGCQALLWGPLEAGFCLWSP 91
Q +P +GC + WG L G C+W P
Sbjct: 15 QKKPAFGC--IGWGSLAPGICIWDP 37
>gi|169166771 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 67 QLRPLWGCQALLWGPLEAGFCLWSP 91
Q +P +GC + WG L G C+W P
Sbjct: 15 QKKPAFGC--IGWGSLAPGICIWDP 37
>gi|169166418 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 67 QLRPLWGCQALLWGPLEAGFCLWSP 91
Q +P +GC + WG L G C+W P
Sbjct: 15 QKKPAFGC--IGWGSLAPGICIWDP 37
>gi|9506615 protein arginine methyltransferase 7 [Homo sapiens]
Length = 692
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 44 ATHEGVELW-SQQGLRPQCGEAAAQLRPLWGCQA-LLW 79
A H+ +W S Q P+ E Q+RP+ CQA LLW
Sbjct: 337 AHHDDYCVWYSLQRTSPEKNERVRQMRPVCDCQAHLLW 374
>gi|7662058 tectonin beta-propeller repeat containing 2 [Homo sapiens]
Length = 1411
Score = 27.7 bits (60), Expect = 2.0
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 31 SRMRCAVLTSSAAATHEGVELWSQQGLRPQCGEAA---------------AQLRPLWGCQ 75
S + A + +SAA T EG LW Q + C +A A++R CQ
Sbjct: 1119 SATKWAFVLASAAPTKEGSFLWLCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQ 1178
Query: 76 ALLWGPLEAGFCLWSPQILSVGRGLGHTAVAKSQL 110
LW G S G+ T + SQL
Sbjct: 1179 DALWALDSLGQVFIRTLSKSCPTGMHWTRLDLSQL 1213
>gi|40804761 nanos homolog 1 [Homo sapiens]
Length = 292
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 1 MAATTLRTAALAGNLE-GCSRGGTGQAGIPGSRMRCAVLTSSAAATHEG 48
+ TL T A+ G GC+RGG G G P S +SS + H G
Sbjct: 47 LGLATLITKAVDGEPRFGCARGGNGGGGSPPSSS-----SSSCCSPHTG 90
>gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens]
Length = 446
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 29 PGSRMRCAVLTSSAAATHEGVELWSQQGLRPQCGEAAAQLRPLWGCQALLWG---PLEAG 85
P RC V A +H V +WS + L +CG A P+W + L P +
Sbjct: 230 PAHTCRCGV----PACSH--VPMWSARLLTCRCGVPACSHVPMWSARLLTCRCGVPACSH 283
Query: 86 FCLWSPQILS 95
+WS ++L+
Sbjct: 284 VPMWSARLLT 293
>gi|56676337 transmembrane protein 28 [Homo sapiens]
Length = 472
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 51 LWSQQGLRPQCGEAAAQLRPLWG 73
LW G RP+ E ++ +RP WG
Sbjct: 61 LWLCAGARPRARELSSAMRPPWG 83
>gi|6912330 deafness locus associated putative guanine nucleotide
exchange factor [Homo sapiens]
Length = 458
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 13 GNLEGCSRGGTGQAGIPGSRMRCAVLTSSAAATHEGVELWSQQGLRPQCGEAAAQLRPLW 72
G + C GQ G+P RC V A H+ + GLR A+ + W
Sbjct: 120 GQVLSCGSNSFGQLGVPHGPRRCVV--PQAIELHKEKVVCIAAGLRHAVAATASGIVFQW 177
Query: 73 G 73
G
Sbjct: 178 G 178
>gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]
Length = 3996
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 35 CAVLTSSAAATHEGVELWSQQGLRPQCGEAAAQLRP 70
C V+T AAA W+Q GL G + P
Sbjct: 1581 CEVITEEAAAALRKATKWAQSGLIVSIGPPVESINP 1616
>gi|24307871 kidney predominant protein NCU-G1 [Homo sapiens]
Length = 406
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 77 LLWGPLEAGFCLWSP 91
LLWG L +GF W P
Sbjct: 270 LLWGSLPSGFAQWRP 284
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 59 PQCGEAAAQLRPLWGCQ------ALLWGPLEAGFCLWSPQIL 94
P+C AA Q R W C+ L+W L+ GF W + L
Sbjct: 251 PECYLAACQKRDNWFCEPCSNPHPLVWAKLK-GFPFWPAKAL 291
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 59 PQCGEAAAQLRPLWGCQ------ALLWGPLEAGFCLWSPQIL 94
P+C AA Q R W C+ L+W L+ GF W + L
Sbjct: 276 PECYLAACQKRDNWFCEPCSNPHPLVWAKLK-GFPFWPAKAL 316
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 59 PQCGEAAAQLRPLWGCQ------ALLWGPLEAGFCLWSPQIL 94
P+C AA Q R W C+ L+W L+ GF W + L
Sbjct: 276 PECYLAACQKRDNWFCEPCSNPHPLVWAKLK-GFPFWPAKAL 316
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,684,333
Number of Sequences: 37866
Number of extensions: 195186
Number of successful extensions: 704
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 20
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.