BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239748259 PREDICTED: similar to hCG1794790 [Homo sapiens] (172 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239748259 PREDICTED: similar to hCG1794790 [Homo sapiens] 355 8e-99 gi|239753717 PREDICTED: similar to hCG1794790 [Homo sapiens] 353 3e-98 gi|239742160 PREDICTED: similar to hCG1794790 [Homo sapiens] 353 5e-98 gi|10863877 phospholipid scramblase 1 [Homo sapiens] 101 3e-22 gi|146229354 phospholipid scramblase family, member 5 [Homo sapi... 96 1e-20 gi|9966795 phospholipid scramblase 2 [Homo sapiens] 92 2e-19 gi|190341019 phospholipid scramblase 4 isoform a [Homo sapiens] 89 2e-18 gi|190194379 phospholipid scramblase 4 isoform a [Homo sapiens] 89 2e-18 gi|190194377 phospholipid scramblase 4 isoform a [Homo sapiens] 89 2e-18 gi|31543417 phospholipid scramblase 3 [Homo sapiens] 80 1e-15 gi|190194381 phospholipid scramblase 4 isoform b [Homo sapiens] 63 1e-10 gi|119120894 Dmx-like 2 [Homo sapiens] 31 0.46 gi|8923271 coiled-coil domain containing 49 [Homo sapiens] 28 5.1 >gi|239748259 PREDICTED: similar to hCG1794790 [Homo sapiens] Length = 172 Score = 355 bits (912), Expect = 8e-99 Identities = 172/172 (100%), Positives = 172/172 (100%) Query: 1 MAIYDLRPWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQV 60 MAIYDLRPWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQV Sbjct: 1 MAIYDLRPWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQV 60 Query: 61 QRIYFAEERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCSLQKLLTLDEEMVIG 120 QRIYFAEERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCSLQKLLTLDEEMVIG Sbjct: 61 QRIYFAEERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCSLQKLLTLDEEMVIG 120 Query: 121 KISKQYSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFELWP 172 KISKQYSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFELWP Sbjct: 121 KISKQYSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFELWP 172 >gi|239753717 PREDICTED: similar to hCG1794790 [Homo sapiens] Length = 172 Score = 353 bits (907), Expect = 3e-98 Identities = 171/172 (99%), Positives = 171/172 (99%) Query: 1 MAIYDLRPWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQV 60 MAIYDLRPWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQV Sbjct: 1 MAIYDLRPWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQV 60 Query: 61 QRIYFAEERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCSLQKLLTLDEEMVIG 120 QRIYFAEERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCSLQKLLTLDEEMVIG Sbjct: 61 QRIYFAEERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCSLQKLLTLDEEMVIG 120 Query: 121 KISKQYSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFELWP 172 KISKQYSGFVRGILTNGEKFGIQFPFDLDVKIK LMLGATFLIEYMYFELWP Sbjct: 121 KISKQYSGFVRGILTNGEKFGIQFPFDLDVKIKXLMLGATFLIEYMYFELWP 172 >gi|239742160 PREDICTED: similar to hCG1794790 [Homo sapiens] Length = 172 Score = 353 bits (905), Expect = 5e-98 Identities = 171/172 (99%), Positives = 171/172 (99%) Query: 1 MAIYDLRPWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQV 60 MAIYDLRPWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQ Sbjct: 1 MAIYDLRPWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQG 60 Query: 61 QRIYFAEERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCSLQKLLTLDEEMVIG 120 QRIYFAEERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCSLQKLLTLDEEMVIG Sbjct: 61 QRIYFAEERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCSLQKLLTLDEEMVIG 120 Query: 121 KISKQYSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFELWP 172 KISKQYSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFELWP Sbjct: 121 KISKQYSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFELWP 172 >gi|10863877 phospholipid scramblase 1 [Homo sapiens] Length = 318 Score = 101 bits (252), Expect = 3e-22 Identities = 47/99 (47%), Positives = 66/99 (66%) Query: 8 PWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQVQRIYFAE 67 PW+ P+ +CP GLEYL QI+Q+ + Q + L VL FET+ YEI N+ QR+YFA Sbjct: 84 PWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVYFAA 143 Query: 68 ERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCS 106 E +C R+ CG S PFT+ I DN+G++V+ L + L+CS Sbjct: 144 EDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCS 182 >gi|146229354 phospholipid scramblase family, member 5 [Homo sapiens] Length = 271 Score = 96.3 bits (238), Expect = 1e-20 Identities = 64/213 (30%), Positives = 97/213 (45%), Gaps = 61/213 (28%) Query: 18 SCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQVQRIYFAEERNNCFLRHL 77 S P GLEYL Q++ + + Q + LG++ ETS YEI N+ QRIYFA E + CF R Sbjct: 53 SLPPGLEYLSQLDLIIIHQQVELLGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTF 112 Query: 78 CGFSSPFTMTIYDNVGRDVLALHKALKCS-------LQKL-LTLDEEMVIGKISKQYSGF 129 C T+ I DN GR+V+ +++ L+C+ LQ+L + ++G +++++ F Sbjct: 113 CSTLRSCTLRITDNSGREVITVNRPLRCNSCWCPCYLQELEIQAPPGTIVGYVTQKWDPF 172 Query: 130 -----------------------------------------------------VRGILTN 136 V + TN Sbjct: 173 LPKFTIQNANKEDILKIVGPCVTCGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTN 232 Query: 137 GEKFGIQFPFDLDVKIKALMLGATFLIEYMYFE 169 + FGI P DLDV +KA M+GA FL ++M+FE Sbjct: 233 ADNFGIHVPADLDVTVKAAMIGACFLFDFMFFE 265 >gi|9966795 phospholipid scramblase 2 [Homo sapiens] Length = 224 Score = 92.0 bits (227), Expect = 2e-19 Identities = 46/97 (47%), Positives = 62/97 (63%) Query: 10 LSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQVQRIYFAEER 69 + P +CP GLEYL QI+ + + Q + L VL FE+S YEI N+ QRIYFA E Sbjct: 1 MPAPPPPLNCPPGLEYLSQIDMILIHQQIELLEVLFSFESSNMYEIKNSFGQRIYFAAED 60 Query: 70 NNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCS 106 N +R+ CG S PFT+ I DNVGR+V+ L + L+C+ Sbjct: 61 TNFCIRNCCGRSRPFTLRITDNVGREVITLERPLRCN 97 Score = 82.8 bits (203), Expect = 1e-16 Identities = 36/61 (59%), Positives = 52/61 (85%) Query: 109 KLLTLDEEMVIGKISKQYSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYF 168 ++ +LDE++V+G+ISK +SGF+R T+ + FGIQFP DLDVK+KA+M+GA FLI+YM+F Sbjct: 161 EITSLDEQIVVGRISKHWSGFLREAFTDADNFGIQFPRDLDVKMKAVMIGACFLIDYMFF 220 Query: 169 E 169 E Sbjct: 221 E 221 >gi|190341019 phospholipid scramblase 4 isoform a [Homo sapiens] Length = 329 Score = 89.0 bits (219), Expect = 2e-18 Identities = 66/227 (29%), Positives = 101/227 (44%), Gaps = 64/227 (28%) Query: 9 WLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQVQRIYFAEE 68 W+ P + +CP GLEYL Q++ + V QHF+PL ++ FET+ Y+I NN Q +Y E Sbjct: 99 WMPGPTPMANCPPGLEYLVQLDNIHVLQHFEPLEMMTCFETNNRYDIKNNSDQMVYIVTE 158 Query: 69 ------RN-------------NCFLRHLCGFSSPFTMTI--------------------- 88 RN +C R + PF T Sbjct: 159 DTDDFTRNAYRTLRPFVLRVTDCMGREIMTMQRPFRCTCCCFCCPSARQELEVQCPPGVT 218 Query: 89 ------YDNVGRDVLALHKALK--------------C---SLQKLLTLDEEMVIGKISKQ 125 + N+ R V ++ K C S+ ++ +LD IG I ++ Sbjct: 219 IGFVAEHWNLCRAVYSIQNEKKENVMRVRGPCSTYGCGSDSVFEVKSLDGISNIGSIIRK 278 Query: 126 YSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFELWP 172 ++G + + + + F I FP DLDVK+KA++ GA FLI++MYFE P Sbjct: 279 WNGLLSA-MADADHFDIHFPLDLDVKMKAMIFGACFLIDFMYFERSP 324 >gi|190194379 phospholipid scramblase 4 isoform a [Homo sapiens] Length = 329 Score = 89.0 bits (219), Expect = 2e-18 Identities = 66/227 (29%), Positives = 101/227 (44%), Gaps = 64/227 (28%) Query: 9 WLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQVQRIYFAEE 68 W+ P + +CP GLEYL Q++ + V QHF+PL ++ FET+ Y+I NN Q +Y E Sbjct: 99 WMPGPTPMANCPPGLEYLVQLDNIHVLQHFEPLEMMTCFETNNRYDIKNNSDQMVYIVTE 158 Query: 69 ------RN-------------NCFLRHLCGFSSPFTMTI--------------------- 88 RN +C R + PF T Sbjct: 159 DTDDFTRNAYRTLRPFVLRVTDCMGREIMTMQRPFRCTCCCFCCPSARQELEVQCPPGVT 218 Query: 89 ------YDNVGRDVLALHKALK--------------C---SLQKLLTLDEEMVIGKISKQ 125 + N+ R V ++ K C S+ ++ +LD IG I ++ Sbjct: 219 IGFVAEHWNLCRAVYSIQNEKKENVMRVRGPCSTYGCGSDSVFEVKSLDGISNIGSIIRK 278 Query: 126 YSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFELWP 172 ++G + + + + F I FP DLDVK+KA++ GA FLI++MYFE P Sbjct: 279 WNGLLSA-MADADHFDIHFPLDLDVKMKAMIFGACFLIDFMYFERSP 324 >gi|190194377 phospholipid scramblase 4 isoform a [Homo sapiens] Length = 329 Score = 89.0 bits (219), Expect = 2e-18 Identities = 66/227 (29%), Positives = 101/227 (44%), Gaps = 64/227 (28%) Query: 9 WLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQVQRIYFAEE 68 W+ P + +CP GLEYL Q++ + V QHF+PL ++ FET+ Y+I NN Q +Y E Sbjct: 99 WMPGPTPMANCPPGLEYLVQLDNIHVLQHFEPLEMMTCFETNNRYDIKNNSDQMVYIVTE 158 Query: 69 ------RN-------------NCFLRHLCGFSSPFTMTI--------------------- 88 RN +C R + PF T Sbjct: 159 DTDDFTRNAYRTLRPFVLRVTDCMGREIMTMQRPFRCTCCCFCCPSARQELEVQCPPGVT 218 Query: 89 ------YDNVGRDVLALHKALK--------------C---SLQKLLTLDEEMVIGKISKQ 125 + N+ R V ++ K C S+ ++ +LD IG I ++ Sbjct: 219 IGFVAEHWNLCRAVYSIQNEKKENVMRVRGPCSTYGCGSDSVFEVKSLDGISNIGSIIRK 278 Query: 126 YSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFELWP 172 ++G + + + + F I FP DLDVK+KA++ GA FLI++MYFE P Sbjct: 279 WNGLLSA-MADADHFDIHFPLDLDVKMKAMIFGACFLIDFMYFERSP 324 >gi|31543417 phospholipid scramblase 3 [Homo sapiens] Length = 295 Score = 79.7 bits (195), Expect = 1e-15 Identities = 35/58 (60%), Positives = 47/58 (81%) Query: 112 TLDEEMVIGKISKQYSGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFE 169 T DE +G+ISKQ+ G VR LT+ + FG+QFP DLDV++KA++LGATFLI+YM+FE Sbjct: 226 TRDESRSVGRISKQWGGLVREALTDADDFGLQFPLDLDVRVKAVLLGATFLIDYMFFE 283 Score = 52.4 bits (124), Expect = 2e-07 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 4/105 (3%) Query: 1 MAIYDLRPWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQV 60 +A+ P+L P P GLE+L QI+Q+ + Q + + +ET YE+ + Sbjct: 58 VALGSAAPFLPLP----GVPSGLEFLVQIDQILIHQKAERVETFLGWETCNRYELRSGAG 113 Query: 61 QRIYFAEERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKC 105 Q + A E +NC R CG P + + D R+VL L + L C Sbjct: 114 QPLGQAAEESNCCARLCCGARRPLRVRLADPGDREVLRLLRPLHC 158 >gi|190194381 phospholipid scramblase 4 isoform b [Homo sapiens] Length = 239 Score = 62.8 bits (151), Expect = 1e-10 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 32/166 (19%) Query: 9 WLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFET--SKTYEILNNQVQRIYFA 66 W+ P + +CP GLEYL Q+ C +G + + Y I N + + + Sbjct: 99 WMPGPTPMANCPPGLEYLVQLE--VQCPPGVTIGFVAEHWNLCRAVYSIQNEKKENV--M 154 Query: 67 EERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCSLQKLLTLDEEMVIGKISKQY 126 R C + CG S F + D + IG I +++ Sbjct: 155 RVRGPC-STYGCGSDSVFEVKSLDGISN------------------------IGSIIRKW 189 Query: 127 SGFVRGILTNGEKFGIQFPFDLDVKIKALMLGATFLIEYMYFELWP 172 +G + + + + F I FP DLDVK+KA++ GA FLI++MYFE P Sbjct: 190 NGLL-SAMADADHFDIHFPLDLDVKMKAMIFGACFLIDFMYFERSP 234 >gi|119120894 Dmx-like 2 [Homo sapiens] Length = 3036 Score = 31.2 bits (69), Expect = 0.46 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 13/88 (14%) Query: 8 PWLSTPETITSCPLGLEY-LHQINQLT---VCQHF---DPLGVLRKFETSKTYEIL---- 56 PWL T +T T + ++ LH + ++T V Q++ G +R FE ++ +++ Sbjct: 2744 PWLGTGQTSTGASVLMKRNLHNVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQ 2803 Query: 57 --NNQVQRIYFAEERNNCFLRHLCGFSS 82 N +V R+YF + N C + GF S Sbjct: 2804 AGNARVTRLYFNSQGNKCGVADGEGFLS 2831 >gi|8923271 coiled-coil domain containing 49 [Homo sapiens] Length = 425 Score = 27.7 bits (60), Expect = 5.1 Identities = 12/23 (52%), Positives = 16/23 (69%) Query: 39 DPLGVLRKFETSKTYEILNNQVQ 61 DPL ++RK E K E+LNN V+ Sbjct: 137 DPLFIIRKKEEEKKREVLNNPVK 159 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.326 0.142 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,206,137 Number of Sequences: 37866 Number of extensions: 240074 Number of successful extensions: 516 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 496 Number of HSP's gapped (non-prelim): 21 length of query: 172 length of database: 18,247,518 effective HSP length: 95 effective length of query: 77 effective length of database: 14,650,248 effective search space: 1128069096 effective search space used: 1128069096 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.