Guide to the Human Genome
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Name: LOC100289839 Sequence: fasta or formatted (151aa) NCBI GI: 239748138
Description:

PREDICTED: hypothetical protein XP_002346536

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         18           2
 C cysteine            2.0          3           1
 D aspartate           3.3          5           2
 E glutamate           6.0          9           2
 F phenylalanine       3.3          5           1
 G glycine             6.6         10           1
 H histidine           4.0          6           2
 I isoleucine          5.3          8           2
 K lysine              1.3          2           1
 L leucine             9.3         14           2
 M methionine          3.3          5           2
 N asparagine          2.0          3           1
 P proline             6.6         10           1
 Q glutamine           9.3         14           1
 R arginine            5.3          8           1
 S serine              5.3          8           2
 T threonine           4.0          6           1
 V valine              9.9         15           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346536 
LOC100294011          1.000   PREDICTED: hypothetical protein 
LOC100287546          1.000   PREDICTED: hypothetical protein XP_002342376 
ZFP64                 0.022   zinc finger protein 64 isoform c 
ZFP64                 0.022   zinc finger protein 64 isoform b 
ZFP64                 0.022   zinc finger protein 64 isoform a 
MTOR                  0.014   FK506 binding protein 12-rapamycin associated protein...
RPS6KL1               0.011   ribosomal protein S6 kinase-like 1 
KIAA0430              0.011   limkain b1 
LOXL3                 0.011   lysyl oxidase-like 3 precursor 
NIPBL                 0.007   delangin isoform B 
NIPBL                 0.007   delangin isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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