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Search of human proteins with 239746986
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746986 PREDICTED: hypothetical protein XP_002343905 [Homo
sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746986 PREDICTED: hypothetical protein XP_002343905 [Homo ... 275 7e-75
gi|239746763 PREDICTED: hypothetical protein XP_002343843 [Homo ... 275 7e-75
gi|126032348 hect domain and RLD 2 [Homo sapiens] 31 0.22
gi|223941846 zinc finger protein 652 [Homo sapiens] 29 0.85
gi|7662384 zinc finger protein 652 [Homo sapiens] 29 0.85
gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens] 29 1.1
gi|237649128 N-acetyltransferase 1 isoform a [Homo sapiens] 28 1.9
gi|237649126 N-acetyltransferase 1 isoform a [Homo sapiens] 28 1.9
gi|237649124 N-acetyltransferase 1 isoform a [Homo sapiens] 28 1.9
gi|237649122 N-acetyltransferase 1 isoform a [Homo sapiens] 28 1.9
gi|237649119 N-acetyltransferase 1 isoform a [Homo sapiens] 28 1.9
gi|42741671 N-acetyltransferase 1 isoform a [Homo sapiens] 28 1.9
gi|237649132 N-acetyltransferase 1 isoform b [Homo sapiens] 28 1.9
gi|237649130 N-acetyltransferase 1 isoform b [Homo sapiens] 28 1.9
gi|4885237 forkhead box C2 [Homo sapiens] 28 1.9
gi|237649009 N-acetyltransferase 1 isoform a [Homo sapiens] 28 1.9
gi|108773804 Fraser syndrome 1 [Homo sapiens] 27 4.2
gi|14589891 cadherin 3, type 1 preproprotein [Homo sapiens] 26 7.2
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 26 9.4
>gi|239746986 PREDICTED: hypothetical protein XP_002343905 [Homo
sapiens]
Length = 127
Score = 275 bits (703), Expect = 7e-75
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG 60
MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG
Sbjct: 1 MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG 60
Query: 61 GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF 120
GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF
Sbjct: 61 GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF 120
Query: 121 SNACGFF 127
SNACGFF
Sbjct: 121 SNACGFF 127
>gi|239746763 PREDICTED: hypothetical protein XP_002343843 [Homo
sapiens]
Length = 127
Score = 275 bits (703), Expect = 7e-75
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG 60
MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG
Sbjct: 1 MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG 60
Query: 61 GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF 120
GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF
Sbjct: 61 GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF 120
Query: 121 SNACGFF 127
SNACGFF
Sbjct: 121 SNACGFF 127
>gi|126032348 hect domain and RLD 2 [Homo sapiens]
Length = 4834
Score = 31.2 bits (69), Expect = 0.22
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 55 GVHHVGGHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYT 103
G +H GH + ++P +V G Q K +A+ G + +C G VYT
Sbjct: 4224 GDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYT 4272
>gi|223941846 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 0.85
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 18 PRSFIGGAYLEKQPAEKLL-RQTGGPEHVLVDVRVDHPGVH 57
P SF GA E + K+ R++G P VLVD ++ P +H
Sbjct: 33 PSSFYHGANQELDLSTKVYKRESGSPYSVLVDTKMSKPHLH 73
>gi|7662384 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 0.85
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 18 PRSFIGGAYLEKQPAEKLL-RQTGGPEHVLVDVRVDHPGVH 57
P SF GA E + K+ R++G P VLVD ++ P +H
Sbjct: 33 PSSFYHGANQELDLSTKVYKRESGSPYSVLVDTKMSKPHLH 73
>gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens]
Length = 1233
Score = 28.9 bits (63), Expect = 1.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 16 GSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGV 56
G P +F+ YLE +P ++ LR+ G + V+ +R + P +
Sbjct: 565 GEPETFLPLDYLEVKPTDEKLRELKGAKLVIDVIRYEPPHI 605
>gi|237649128 N-acetyltransferase 1 isoform a [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 24 GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
G Y+ PA+K + G H+L+ V +D G S QPLE++ +D+ Q+
Sbjct: 90 GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146
>gi|237649126 N-acetyltransferase 1 isoform a [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 24 GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
G Y+ PA+K + G H+L+ V +D G S QPLE++ +D+ Q+
Sbjct: 90 GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146
>gi|237649124 N-acetyltransferase 1 isoform a [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 24 GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
G Y+ PA+K + G H+L+ V +D G S QPLE++ +D+ Q+
Sbjct: 90 GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146
>gi|237649122 N-acetyltransferase 1 isoform a [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 24 GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
G Y+ PA+K + G H+L+ V +D G S QPLE++ +D+ Q+
Sbjct: 90 GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146
>gi|237649119 N-acetyltransferase 1 isoform a [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 24 GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
G Y+ PA+K + G H+L+ V +D G S QPLE++ +D+ Q+
Sbjct: 90 GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146
>gi|42741671 N-acetyltransferase 1 isoform a [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 24 GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
G Y+ PA+K + G H+L+ V +D G S QPLE++ +D+ Q+
Sbjct: 90 GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146
>gi|237649132 N-acetyltransferase 1 isoform b [Homo sapiens]
Length = 352
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 24 GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
G Y+ PA+K + G H+L+ V +D G S QPLE++ +D+ Q+
Sbjct: 152 GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 208
>gi|237649130 N-acetyltransferase 1 isoform b [Homo sapiens]
Length = 352
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 24 GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
G Y+ PA+K + G H+L+ V +D G S QPLE++ +D+ Q+
Sbjct: 152 GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 208
>gi|4885237 forkhead box C2 [Homo sapiens]
Length = 501
Score = 28.1 bits (61), Expect = 1.9
Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 20/107 (18%)
Query: 9 WGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSR 68
+G C G GG Y A L P H+ V +D H G + LS
Sbjct: 313 YGQPCAQGLEAGAAGG-YQCSMRAMSLYTGAERPAHMCVPPALDEALSDHPSGPTSPLSA 371
Query: 69 QQPLEVVGEQDKGQLALGVGCVGSICTCGH-----GHVYTQPPPLDP 110
L L G G++ GH GH + Q PP P
Sbjct: 372 --------------LNLAAGQEGALAATGHHHQHHGHHHPQAPPPPP 404
>gi|237649009 N-acetyltransferase 1 isoform a [Homo sapiens]
Length = 290
Score = 28.1 bits (61), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 24 GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
G Y+ PA+K + G H+L+ V +D G S QPLE++ +D+ Q+
Sbjct: 90 GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 26.9 bits (58), Expect = 4.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 92 SICTCGHGHVYTQPPPLDP 110
S+C+C HG V P P P
Sbjct: 114 SVCSCNHGEVRCTPQPCPP 132
>gi|14589891 cadherin 3, type 1 preproprotein [Homo sapiens]
Length = 829
Score = 26.2 bits (56), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 92 SICTCGHGHVYTQPPPLDPCVIMPSVG 118
++C C HGHV T P P I+P +G
Sbjct: 636 TVCDC-HGHVETCPGPWKGGFILPVLG 661
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 25.8 bits (55), Expect = 9.4
Identities = 20/75 (26%), Positives = 28/75 (37%)
Query: 42 PEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHV 101
P L+D+ +H G + L Q L+ + E D LG GC S+ + H
Sbjct: 1098 PSLALLDLSSNHLGPEGLRQLAMGLPGQATLQSLEELDLSMNPLGDGCGQSLASLLHACP 1157
Query: 102 YTQPPPLDPCVIMPS 116
L C PS
Sbjct: 1158 LLSTLRLQACGFGPS 1172
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.141 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,371,801
Number of Sequences: 37866
Number of extensions: 308695
Number of successful extensions: 520
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 20
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.