Guide to the Human Genome
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Name: LOC100288983 Sequence: fasta or formatted (127aa) NCBI GI: 239746986
Description:

PREDICTED: hypothetical protein XP_002343905

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          6           1
 C cysteine            5.5          7           2
 D aspartate           4.7          6           1
 E glutamate           3.9          5           1
 F phenylalanine       3.9          5           2
 G glycine            14.2         18           2
 H histidine           5.5          7           2
 I isoleucine          2.4          3           1
 K lysine              2.4          3           1
 L leucine             7.9         10           2
 M methionine          1.6          2           1
 N asparagine          1.6          2           1
 P proline             7.9         10           3
 Q glutamine           7.1          9           2
 R arginine            3.1          4           1
 S serine              6.3          8           1
 T threonine           3.1          4           1
 V valine             11.8         15           2
 W tryptophan          0.8          1           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343905 
LOC100288477          1.000   PREDICTED: hypothetical protein XP_002343843 
HERC2                 0.024   hect domain and RLD 2 
ZNF652                0.016   zinc finger protein 652 
ZNF652                0.016   zinc finger protein 652 
SMC1A                 0.016   structural maintenance of chromosomes 1A 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform b 
NAT1                  0.012   N-acetyltransferase 1 isoform b 
FOXC2                 0.012   forkhead box C2 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
FRAS1                 0.008   Fraser syndrome 1 
CDH3                  0.004   cadherin 3, type 1 preproprotein 
NFKBIL2               0.004   NF-kappa-B inhibitor-like protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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