Search of human proteins with 116812618

Search of human proteins with 116812618

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116812618 hypothetical protein LOC152940 [Homo sapiens]
         (186 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116812618 hypothetical protein LOC152940 [Homo sapiens]            392   e-109
gi|221136781 S1 RNA binding domain 1 [Homo sapiens]                    34   0.083
gi|38327039 heat shock 70kDa protein 4 [Homo sapiens]                  31   0.54 
gi|5174623 placental protein 11 precursor [Homo sapiens]               31   0.54 
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa...    28   4.6  
gi|156105685 ATP-binding cassette, sub-family B, member 8 [Homo ...    28   5.9  
gi|7657544 sodium channel, voltage gated, type VIII, alpha [Homo...    28   5.9  

>gi|116812618 hypothetical protein LOC152940 [Homo sapiens]
          Length = 186

 Score =  392 bits (1006), Expect = e-109
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MASVSYQKPTSTTVGKQMIFTGPDYIKDYLPKIHQHTSYVGEQHLALEKTGDLRYLWRPA 60
           MASVSYQKPTSTTVGKQMIFTGPDYIKDYLPKIHQHTSYVGEQHLALEKTGDLRYLWRPA
Sbjct: 1   MASVSYQKPTSTTVGKQMIFTGPDYIKDYLPKIHQHTSYVGEQHLALEKTGDLRYLWRPA 60

Query: 61  SNRSLPAKYKHEYVSEIGWRIPQYNFINKSRLGSGFHIKYEELSQASLDSITHRYQNPWQ 120
           SNRSLPAKYKHEYVSEIGWRIPQYNFINKSRLGSGFHIKYEELSQASLDSITHRYQNPWQ
Sbjct: 61  SNRSLPAKYKHEYVSEIGWRIPQYNFINKSRLGSGFHIKYEELSQASLDSITHRYQNPWQ 120

Query: 121 PKPHVLDMQGKQSRASFAWHMSAFEDTDQRNSKWAILVRQCKSSLPRASKPPKLPKLPKK 180
           PKPHVLDMQGKQSRASFAWHMSAFEDTDQRNSKWAILVRQCKSSLPRASKPPKLPKLPKK
Sbjct: 121 PKPHVLDMQGKQSRASFAWHMSAFEDTDQRNSKWAILVRQCKSSLPRASKPPKLPKLPKK 180

Query: 181 EKKRKH 186
           EKKRKH
Sbjct: 181 EKKRKH 186


>gi|221136781 S1 RNA binding domain 1 [Homo sapiens]
          Length = 995

 Score = 33.9 bits (76), Expect = 0.083
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 118 PWQPKPHVLDMQGKQSRASFAWHMSAFEDTDQRNSKW---AILVRQCKSSLPRASKPPKL 174
           P + K  V D+  K   +SF+   SA E+ D+ +S W     + R  K   P+ SKP ++
Sbjct: 5   PRRAKVQVQDVVLKDEFSSFSELSSASEEDDKEDSAWEPQKKVPRSRKQPPPKESKPKRM 64

Query: 175 PKLPK 179
           P++ K
Sbjct: 65  PRVKK 69


>gi|38327039 heat shock 70kDa protein 4 [Homo sapiens]
          Length = 840

 Score = 31.2 bits (69), Expect = 0.54
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 47  LEKTGDLRYLWRPASNRSLPAKYKHEYVSEIGWRIPQYNFINKSRLGSGFHIKYEELSQA 106
           ++K  +L+ L +P   R   ++ + +   E+G +I QY  I  S        +Y+ L  A
Sbjct: 672 VDKLAELKNLGQPIKIRFQESEERPKLFEELGKQIQQYMKIISSFKNK--EDQYDHLDAA 729

Query: 107 SLDSITHRYQNPWQPKPHVLDMQGKQSRASFAWHMSAFEDTDQRNSKWAILVRQCKSSLP 166
            +  +        +   + L++Q KQS       M     + +  +K   L   C    P
Sbjct: 730 DMTKVEKSTNEAMEWMNNKLNLQNKQSLT-----MDPVVKSKEIEAKIKELTSTCS---P 781

Query: 167 RASKPPKLPKLPKKEKK 183
             SKP    + PK+E+K
Sbjct: 782 IISKPKPKVEPPKEEQK 798


>gi|5174623 placental protein 11 precursor [Homo sapiens]
          Length = 369

 Score = 31.2 bits (69), Expect = 0.54
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 22/111 (19%)

Query: 26  IKDYLPKIHQHTSYVGEQHLALEKTGDLRYLWRPASNRSLP----AKYKHEYVSEIGWRI 81
           +K+    +H    Y  EQ    E   DL+ +W    +R       + ++H +  E+    
Sbjct: 199 MKELYSFLHHQNRYGSEQ----EFVDDLKNMWFGLYSRGNEEGDSSGFEHVFSGEV---- 250

Query: 82  PQYNFINKSRLGSGFH--IK-YEELSQASLDSITHRYQNPWQPKPHVLDMQ 129
                  K    +GFH  I+ Y E  +  +D  +H Y  PW   P VL MQ
Sbjct: 251 -------KKGKVTGFHNWIRFYLEEKEGLVDYYSHIYDGPWDSYPDVLAMQ 294


>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
           sapiens]
          Length = 2997

 Score = 28.1 bits (61), Expect = 4.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 166 PRASKPPKLPKLPKKEKKRK 185
           P+  K PK PK+PK+ K++K
Sbjct: 665 PKEPKTPKAPKIPKEPKEKK 684


>gi|156105685 ATP-binding cassette, sub-family B, member 8 [Homo
           sapiens]
          Length = 718

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 139 WHMSAFEDTDQRNSKWAILVRQCKSSLPRASKPPKLPKLPKKEKKRKH 186
           W     E+  ++   +A L+R+     PR + PP  PK P+  +  +H
Sbjct: 671 WEAGTHEELLKKGGLYAELIRRQALDAPRTAAPP--PKKPEGPRSHQH 716


>gi|7657544 sodium channel, voltage gated, type VIII, alpha [Homo
            sapiens]
          Length = 1980

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 39   YVGEQHLALEKTGDLRYLWRPASNRSLPAKYKHEYVSEIGWRIPQYNFINKSRLGSGF 96
            + G+ H    +T ++R+     +N++   K      +EI W+  + NF N   +G+G+
Sbjct: 1349 FAGKYHYCFNETSEIRFEIEDVNNKTECEKLMEGNNTEIRWKNVKINFDN---VGAGY 1403


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.130    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,935,387
Number of Sequences: 37866
Number of extensions: 336256
Number of successful extensions: 915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 10
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.