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Search of human proteins with 116812606
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116812606 zinc finger, H2C2 domain containing [Homo sapiens]
(522 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116812606 zinc finger, H2C2 domain containing [Homo sapiens] 1060 0.0
gi|126723547 hypothetical protein LOC57523 [Homo sapiens] 61 2e-09
gi|47106061 KRAB-A domain containing 2 [Homo sapiens] 52 1e-06
gi|46195755 SCAN domain containing 3 [Homo sapiens] 48 2e-05
gi|166235167 zinc finger protein ZNF-U69274 [Homo sapiens] 48 2e-05
gi|58530842 desmoplakin isoform II [Homo sapiens] 32 1.1
gi|58530840 desmoplakin isoform I [Homo sapiens] 32 1.1
gi|113680890 zinc finger protein 90 [Homo sapiens] 31 2.4
gi|38044112 restin isoform b [Homo sapiens] 30 5.4
gi|4506751 restin isoform a [Homo sapiens] 30 5.4
gi|215982794 myosin VA isoform 2 [Homo sapiens] 29 9.2
gi|215982791 myosin VA isoform 1 [Homo sapiens] 29 9.2
gi|194733753 phosphoinositide-binding protein PIP3-E isoform 1 [... 29 9.2
gi|194733747 phosphoinositide-binding protein PIP3-E isoform 1 [... 29 9.2
gi|40354212 phosphoinositide-binding protein PIP3-E isoform 2 [H... 29 9.2
gi|18104959 thioredoxin domain containing 9 [Homo sapiens] 29 9.2
gi|39725957 DAZ interacting protein 1 isoform 2 [Homo sapiens] 29 9.2
gi|7662436 DAZ interacting protein 1 isoform 1 [Homo sapiens] 29 9.2
>gi|116812606 zinc finger, H2C2 domain containing [Homo sapiens]
Length = 522
Score = 1060 bits (2740), Expect = 0.0
Identities = 522/522 (100%), Positives = 522/522 (100%)
Query: 1 MVRSGKNGDLHLKQIAYYKRTGEYHSTTLPSERSGIRRAAKKFVFKEKKLFYVGKDRKQN 60
MVRSGKNGDLHLKQIAYYKRTGEYHSTTLPSERSGIRRAAKKFVFKEKKLFYVGKDRKQN
Sbjct: 1 MVRSGKNGDLHLKQIAYYKRTGEYHSTTLPSERSGIRRAAKKFVFKEKKLFYVGKDRKQN 60
Query: 61 RLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQV 120
RLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQV
Sbjct: 61 RLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQV 120
Query: 121 AKNTVIVAPKQHLLKVENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDV 180
AKNTVIVAPKQHLLKVENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDV
Sbjct: 121 AKNTVIVAPKQHLLKVENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDV 180
Query: 181 SASEVSKAIINIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQIVISHTSGTVNPTE 240
SASEVSKAIINIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQIVISHTSGTVNPTE
Sbjct: 181 SASEVSKAIINIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQIVISHTSGTVNPTE 240
Query: 241 STPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSD 300
STPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSD
Sbjct: 241 STPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSD 300
Query: 301 SLHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLN 360
SLHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLN
Sbjct: 301 SLHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLN 360
Query: 361 PFHLKVGHEVLRQRKNWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSH 420
PFHLKVGHEVLRQRKNWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSH
Sbjct: 361 PFHLKVGHEVLRQRKNWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSH 420
Query: 421 LKPYIRESSEQESLYLLQGSVVADHDYIGLPEIPIGAYQANILVEDATIGIVDNELLTSS 480
LKPYIRESSEQESLYLLQGSVVADHDYIGLPEIPIGAYQANILVEDATIGIVDNELLTSS
Sbjct: 421 LKPYIRESSEQESLYLLQGSVVADHDYIGLPEIPIGAYQANILVEDATIGIVDNELLTSS 480
Query: 481 KDRELLEYRNTKISPLIDDHSSLEKQTFSLLDSSNQVLEYLS 522
KDRELLEYRNTKISPLIDDHSSLEKQTFSLLDSSNQVLEYLS
Sbjct: 481 KDRELLEYRNTKISPLIDDHSSLEKQTFSLLDSSNQVLEYLS 522
>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
Length = 1898
Score = 61.2 bits (147), Expect = 2e-09
Identities = 48/232 (20%), Positives = 97/232 (41%), Gaps = 7/232 (3%)
Query: 55 KDRKQNRLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYA 114
K K+ R+ +V + ++ ++ H+ GAH T + +W + VK + +
Sbjct: 1526 KGDKKPRVWVVPTQLRRDLIFSVHDIPLGAHQRPEETYKKLRLLGWWPGMQEHVKDYCRS 1585
Query: 115 CQHCQVAKNTV----IVAPKQHLLKVENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTK 170
C C + +N + V L+ PWS + ++++GP S H + +I+ D T+
Sbjct: 1586 CLFC-IPRNLIGSELKVIESPWPLRSTAPWSNLQIEVVGPVTISEEGHKHVLIVADPNTR 1644
Query: 171 WIVILPLCDVSASEVSKAII-NIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQIVI 229
W+ PL + + V++ ++ ++F +G P ++ Q +F + + + G + +
Sbjct: 1645 WVEAFPLKPYTHTAVAQVLLQHVFARWGVPVRLEAAQGPQFARHVLVSCGLALGAQVASL 1704
Query: 230 SHTSGTVNPTESTPN-TIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPT 280
S T S K L + H W L + AF + + T
Sbjct: 1705 SRDLQFPCLTSSGAYWEFKRALKEFIFLHGKKWAASLPLLHLAFRASSTDAT 1756
>gi|47106061 KRAB-A domain containing 2 [Homo sapiens]
Length = 492
Score = 52.4 bits (124), Expect = 1e-06
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 17/263 (6%)
Query: 37 RRAAKKFVFK---EKKLFYVGKDRKQNRLVIVSEEEKKKVLRECHENDSGAHHGISRTLT 93
RRAAK V +KL + V +EE +L + H S H G +R L
Sbjct: 157 RRAAKYDVISVQGTEKLIEATHGERDRIRYYVHKEELFDILHDTHL--SIGHGGRTRMLK 214
Query: 94 LVESNYYWTSVTNDV-KQWVYACQHCQVAKNTVI---VAPKQHLLKVENPWSLVTVDLMG 149
++ Y +VT +V ++ C+ C KN V +APK K + S V+++
Sbjct: 215 ELQGKY--GNVTKEVIVLYLTLCKQCH-QKNPVPKRGLAPKPMTFKDID--STCQVEILD 269
Query: 150 PFHTSNRSHVYAIIMTDLFTKWIVILPLCDVSASEVSKAIINIFFLYGPPQKIIMDQRDE 209
+++ + + D TK+I++ PL A EV +++IF + G P + D E
Sbjct: 270 MQSSADGEFKFILYYQDHSTKFIILRPLRTKQAHEVVSVLLDIFTILGTPSVLDSDSGVE 329
Query: 210 FIQQINIELYRLFGIKQIVIS--HTSGTVNPTESTPNTIKAFLSKHC-ADHPNNWDDHLS 266
F Q+ EL L+ +IV H + E +K +S ++H +W L
Sbjct: 330 FTNQVVHELNELWPDLKIVSGKYHPGQSQGSLEGASRDVKNMISTWMQSNHSCHWAKGLR 389
Query: 267 AVSFAFNVTHLEPTKNTPYFQMF 289
+ N + +P+ MF
Sbjct: 390 FMQMVRNQAFDVSLQQSPFEAMF 412
>gi|46195755 SCAN domain containing 3 [Homo sapiens]
Length = 1325
Score = 47.8 bits (112), Expect = 2e-05
Identities = 64/270 (23%), Positives = 113/270 (41%), Gaps = 20/270 (7%)
Query: 78 HENDSGAHHGISRTLTLVESNYYWTSVTNDVKQ-WVYACQHCQVAKNTVI--VAPKQHLL 134
H HG RT E + ++T +V ++ C+ CQ KN+ + V + +
Sbjct: 312 HNTHLSIGHG-GRTRMEKELQAKYKNITKEVIMLYLTLCKPCQ-QKNSKLKKVLTSKSIK 369
Query: 135 KVENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDVSASEVSKAIINIFF 194
+V S VDL+ + + + + DL TK + L +EV+ A+++IF
Sbjct: 370 EVS---SRCQVDLIDMQLNPDGEYRFILHYQDLCTKLTFLRSLKSKRPTEVAHALLDIFT 426
Query: 195 LYGPPQKIIMDQRDEFIQQINIELYRLFGIKQIV--ISHTSGTVNPTESTPNTIKAFLSK 252
+ G P + D EF Q+ EL ++ +IV S T + + E T + K S
Sbjct: 427 IIGAPSVLQSDNGREFSSQVVSELSNIWPELKIVHGKSQTCQSQSSAEQTEDIRKRIFSW 486
Query: 253 HCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSDSLHEVDGDNTSM 312
++ ++W + L + + N + + TP FS + + L E +
Sbjct: 487 MQTNNSSHWTEFLWFIQMSQNQPYHRSMQQTPCESAFSSEAKLGLSHSQLTE------EL 540
Query: 313 FAKI--LDAIKEADKIMENKTTSLGQMENN 340
A + + + +ADK +EN T Q E N
Sbjct: 541 VASLHTENELDQADKELEN--TLRAQYEEN 568
>gi|166235167 zinc finger protein ZNF-U69274 [Homo sapiens]
Length = 1053
Score = 47.8 bits (112), Expect = 2e-05
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 36 IRRAAKKFVFKEKKLFYVGKDRKQNRL----VIVSEEEKKKVLRECHENDSGAHHGISRT 91
IR+AA +V + L+Y + R + V++ E ++ ++ H G HH +T
Sbjct: 33 IRKAAACYVVRGGTLYYQRRQRHRKTFAELEVVLQPERRRDLIEAAHLGPGGTHHTRHQT 92
Query: 92 LTLVESNYYWTSVTNDVKQWVYACQHCQ 119
+ Y+W + VK ++ C CQ
Sbjct: 93 WHYLSKTYWWRGILKQVKDYIKQCSKCQ 120
>gi|58530842 desmoplakin isoform II [Homo sapiens]
Length = 2272
Score = 32.3 bits (72), Expect = 1.1
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 27/140 (19%)
Query: 281 KNTPYFQMF----SRNPYMPETSDSLHE-VDGDNTSMFAKILDAIKEADKIMENKTTSLG 335
+N YFQ F S Y+ DS+ + D +L+ IKE +K E
Sbjct: 374 ENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKR 433
Query: 336 QMENNNLDELNKSKIIVKKKPKQLNPFHLKVGHEVLRQRKNW--------------WKDG 381
Q++N +NKSK IV+ KP+ NP + +LR ++ KD
Sbjct: 434 QVQNL----VNKSKKIVQLKPR--NPDYRSNKPIILRALCDYKQDQKIVHKGDECILKDN 487
Query: 382 RFQSEW--VGPCVIDYITES 399
+S+W GP +D + S
Sbjct: 488 NERSKWYVTGPGGVDMLVPS 507
>gi|58530840 desmoplakin isoform I [Homo sapiens]
Length = 2871
Score = 32.3 bits (72), Expect = 1.1
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 27/140 (19%)
Query: 281 KNTPYFQMF----SRNPYMPETSDSLHE-VDGDNTSMFAKILDAIKEADKIMENKTTSLG 335
+N YFQ F S Y+ DS+ + D +L+ IKE +K E
Sbjct: 374 ENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKR 433
Query: 336 QMENNNLDELNKSKIIVKKKPKQLNPFHLKVGHEVLRQRKNW--------------WKDG 381
Q++N +NKSK IV+ KP+ NP + +LR ++ KD
Sbjct: 434 QVQNL----VNKSKKIVQLKPR--NPDYRSNKPIILRALCDYKQDQKIVHKGDECILKDN 487
Query: 382 RFQSEW--VGPCVIDYITES 399
+S+W GP +D + S
Sbjct: 488 NERSKWYVTGPGGVDMLVPS 507
>gi|113680890 zinc finger protein 90 [Homo sapiens]
Length = 636
Score = 31.2 bits (69), Expect = 2.4
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 307 GDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLDELNKSKIIVKKKP 356
G+N+ + ++ + +I ++ +LG +N D LN++ I+ KKKP
Sbjct: 161 GENSRLNTNLVTQLNIPARIRPSECETLGSNLGHNADLLNENNILAKKKP 210
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 30.0 bits (66), Expect = 5.4
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 302 LHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLNP 361
+ ++ + T A + D K+ + ++N+ +L + N++ELNKSK ++ + +++
Sbjct: 1049 MEQMTKEKTETLASLEDT-KQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEE 1107
Query: 362 FHLKVGHEVLRQ 373
F ++ E L+Q
Sbjct: 1108 FRKEI--ETLKQ 1117
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 30.0 bits (66), Expect = 5.4
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 302 LHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLNP 361
+ ++ + T A + D K+ + ++N+ +L + N++ELNKSK ++ + +++
Sbjct: 1084 MEQMTKEKTETLASLEDT-KQTNAKLQNELDTLKENNLKNVEELNKSKELLTVENQKMEE 1142
Query: 362 FHLKVGHEVLRQ 373
F ++ E L+Q
Sbjct: 1143 FRKEI--ETLKQ 1152
>gi|215982794 myosin VA isoform 2 [Homo sapiens]
Length = 1828
Score = 29.3 bits (64), Expect = 9.2
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 301 SLHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLD---ELNKSKIIVKKKPK 357
SL E + + A+ L EA +I + + ++ N NLD +L K V+K K
Sbjct: 1346 SLKEENNRQQQLLAQNLQLPPEA-RIEASLQHEITRLTNENLDLMEQLEKQDKTVRKLKK 1404
Query: 358 QLNPFHLKVGHEVLRQRKN 376
QL F K+G + Q +N
Sbjct: 1405 QLKVFAKKIGELEVGQMEN 1423
>gi|215982791 myosin VA isoform 1 [Homo sapiens]
Length = 1855
Score = 29.3 bits (64), Expect = 9.2
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 301 SLHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLD---ELNKSKIIVKKKPK 357
SL E + + A+ L EA +I + + ++ N NLD +L K V+K K
Sbjct: 1373 SLKEENNRQQQLLAQNLQLPPEA-RIEASLQHEITRLTNENLDLMEQLEKQDKTVRKLKK 1431
Query: 358 QLNPFHLKVGHEVLRQRKN 376
QL F K+G + Q +N
Sbjct: 1432 QLKVFAKKIGELEVGQMEN 1450
>gi|194733753 phosphoinositide-binding protein PIP3-E isoform 1
[Homo sapiens]
Length = 438
Score = 29.3 bits (64), Expect = 9.2
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 230 SHTSGTVNPTESTPNTIKAFLSKHCADHPNNW------DDHLSAVSFAFNVTHLEPTKNT 283
S++ ++ T TP++ + LSK P+ +D ++FA V P +
Sbjct: 195 SYSFSSLENTVKTPSSFPSSLSKERQSLPDTVNSLSAAEDEGQPITFAVQVH--SPVPSE 252
Query: 284 PYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAIKEAD-----KIMENKTTSLGQME 338
N ++ S L+ + D+TS + D + D KIM+ + T + E
Sbjct: 253 AGIHKALENSFVTSESGFLNSLSSDDTSSLSSNHDHLTVPDKPAGSKIMDKEETKVS--E 310
Query: 339 NNNLDELNKS 348
++ +++L KS
Sbjct: 311 DDEMEKLYKS 320
>gi|194733747 phosphoinositide-binding protein PIP3-E isoform 1
[Homo sapiens]
Length = 438
Score = 29.3 bits (64), Expect = 9.2
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 230 SHTSGTVNPTESTPNTIKAFLSKHCADHPNNW------DDHLSAVSFAFNVTHLEPTKNT 283
S++ ++ T TP++ + LSK P+ +D ++FA V P +
Sbjct: 195 SYSFSSLENTVKTPSSFPSSLSKERQSLPDTVNSLSAAEDEGQPITFAVQVH--SPVPSE 252
Query: 284 PYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAIKEAD-----KIMENKTTSLGQME 338
N ++ S L+ + D+TS + D + D KIM+ + T + E
Sbjct: 253 AGIHKALENSFVTSESGFLNSLSSDDTSSLSSNHDHLTVPDKPAGSKIMDKEETKVS--E 310
Query: 339 NNNLDELNKS 348
++ +++L KS
Sbjct: 311 DDEMEKLYKS 320
>gi|40354212 phosphoinositide-binding protein PIP3-E isoform 2 [Homo
sapiens]
Length = 437
Score = 29.3 bits (64), Expect = 9.2
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 230 SHTSGTVNPTESTPNTIKAFLSKHCADHPNNW------DDHLSAVSFAFNVTHLEPTKNT 283
S++ ++ T TP++ + LSK P+ +D ++FA V P +
Sbjct: 194 SYSFSSLENTVKTPSSFPSSLSKERQSLPDTVNSLSAAEDEGQPITFAVQVH--SPVPSE 251
Query: 284 PYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAIKEAD-----KIMENKTTSLGQME 338
N ++ S L+ + D+TS + D + D KIM+ + T + E
Sbjct: 252 AGIHKALENSFVTSESGFLNSLSSDDTSSLSSNHDHLTVPDKPAGSKIMDKEETKVS--E 309
Query: 339 NNNLDELNKS 348
++ +++L KS
Sbjct: 310 DDEMEKLYKS 319
>gi|18104959 thioredoxin domain containing 9 [Homo sapiens]
Length = 226
Score = 29.3 bits (64), Expect = 9.2
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 309 NTSMFAKILD-----AIKEADKIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLNPFH 363
+ MF+K+L+ K ++ ++++ L QM+ + L+ L + ++ +K +Q
Sbjct: 6 SVDMFSKVLEHQLLQTTKLVEEHLDSEIQKLDQMDEDELERLKEKRLQALRKAQQQKQEW 65
Query: 364 LKVGHEVLRQ 373
L GH R+
Sbjct: 66 LSKGHGEYRE 75
>gi|39725957 DAZ interacting protein 1 isoform 2 [Homo sapiens]
Length = 867
Score = 29.3 bits (64), Expect = 9.2
Identities = 16/85 (18%), Positives = 40/85 (47%)
Query: 291 RNPYMPETSDSLHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLDELNKSKI 350
R+PY + + + +D + A++ +E K + + ++ + +D+LN S +
Sbjct: 353 RSPYPQDFHNVMQLLDSQESKWTARVQAIHQEHKKEKGRLLSHIEKLRTSMIDDLNASNV 412
Query: 351 IVKKKPKQLNPFHLKVGHEVLRQRK 375
KK+ ++L + ++ QR+
Sbjct: 413 FYKKRIEELGQRLQEQNELIITQRQ 437
>gi|7662436 DAZ interacting protein 1 isoform 1 [Homo sapiens]
Length = 848
Score = 29.3 bits (64), Expect = 9.2
Identities = 16/85 (18%), Positives = 40/85 (47%)
Query: 291 RNPYMPETSDSLHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLDELNKSKI 350
R+PY + + + +D + A++ +E K + + ++ + +D+LN S +
Sbjct: 353 RSPYPQDFHNVMQLLDSQESKWTARVQAIHQEHKKEKGRLLSHIEKLRTSMIDDLNASNV 412
Query: 351 IVKKKPKQLNPFHLKVGHEVLRQRK 375
KK+ ++L + ++ QR+
Sbjct: 413 FYKKRIEELGQRLQEQNELIITQRQ 437
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,293,021
Number of Sequences: 37866
Number of extensions: 832148
Number of successful extensions: 2123
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2103
Number of HSP's gapped (non-prelim): 28
length of query: 522
length of database: 18,247,518
effective HSP length: 107
effective length of query: 415
effective length of database: 14,195,856
effective search space: 5891280240
effective search space used: 5891280240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.