Guide to the Human Genome
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Search of human proteins with 239746763

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746763 PREDICTED: hypothetical protein XP_002343843 [Homo
sapiens]
         (127 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239746986 PREDICTED: hypothetical protein XP_002343905 [Homo ...   275   7e-75
gi|239746763 PREDICTED: hypothetical protein XP_002343843 [Homo ...   275   7e-75
gi|126032348 hect domain and RLD 2 [Homo sapiens]                      31   0.22 
gi|223941846 zinc finger protein 652 [Homo sapiens]                    29   0.85 
gi|7662384 zinc finger protein 652 [Homo sapiens]                      29   0.85 
gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens]    29   1.1  
gi|237649128 N-acetyltransferase 1 isoform a [Homo sapiens]            28   1.9  
gi|237649126 N-acetyltransferase 1 isoform a [Homo sapiens]            28   1.9  
gi|237649124 N-acetyltransferase 1 isoform a [Homo sapiens]            28   1.9  
gi|237649122 N-acetyltransferase 1 isoform a [Homo sapiens]            28   1.9  
gi|237649119 N-acetyltransferase 1 isoform a [Homo sapiens]            28   1.9  
gi|42741671 N-acetyltransferase 1 isoform a [Homo sapiens]             28   1.9  
gi|237649132 N-acetyltransferase 1 isoform b [Homo sapiens]            28   1.9  
gi|237649130 N-acetyltransferase 1 isoform b [Homo sapiens]            28   1.9  
gi|4885237 forkhead box C2 [Homo sapiens]                              28   1.9  
gi|237649009 N-acetyltransferase 1 isoform a [Homo sapiens]            28   1.9  
gi|108773804 Fraser syndrome 1 [Homo sapiens]                          27   4.2  
gi|14589891 cadherin 3, type 1 preproprotein [Homo sapiens]            26   7.2  
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]        26   9.4  

>gi|239746986 PREDICTED: hypothetical protein XP_002343905 [Homo
           sapiens]
          Length = 127

 Score =  275 bits (703), Expect = 7e-75
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG 60
           MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG
Sbjct: 1   MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG 60

Query: 61  GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF 120
           GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF
Sbjct: 61  GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF 120

Query: 121 SNACGFF 127
           SNACGFF
Sbjct: 121 SNACGFF 127


>gi|239746763 PREDICTED: hypothetical protein XP_002343843 [Homo
           sapiens]
          Length = 127

 Score =  275 bits (703), Expect = 7e-75
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG 60
           MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG
Sbjct: 1   MATNSFQLWGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVG 60

Query: 61  GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF 120
           GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF
Sbjct: 61  GHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYTQPPPLDPCVIMPSVGQF 120

Query: 121 SNACGFF 127
           SNACGFF
Sbjct: 121 SNACGFF 127


>gi|126032348 hect domain and RLD 2 [Homo sapiens]
          Length = 4834

 Score = 31.2 bits (69), Expect = 0.22
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 55   GVHHVGGHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHVYT 103
            G +H  GH +    ++P +V G Q K  +A+  G +  +C    G VYT
Sbjct: 4224 GDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYT 4272


>gi|223941846 zinc finger protein 652 [Homo sapiens]
          Length = 606

 Score = 29.3 bits (64), Expect = 0.85
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 18 PRSFIGGAYLEKQPAEKLL-RQTGGPEHVLVDVRVDHPGVH 57
          P SF  GA  E   + K+  R++G P  VLVD ++  P +H
Sbjct: 33 PSSFYHGANQELDLSTKVYKRESGSPYSVLVDTKMSKPHLH 73


>gi|7662384 zinc finger protein 652 [Homo sapiens]
          Length = 606

 Score = 29.3 bits (64), Expect = 0.85
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 18 PRSFIGGAYLEKQPAEKLL-RQTGGPEHVLVDVRVDHPGVH 57
          P SF  GA  E   + K+  R++G P  VLVD ++  P +H
Sbjct: 33 PSSFYHGANQELDLSTKVYKRESGSPYSVLVDTKMSKPHLH 73


>gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens]
          Length = 1233

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 16  GSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGV 56
           G P +F+   YLE +P ++ LR+  G + V+  +R + P +
Sbjct: 565 GEPETFLPLDYLEVKPTDEKLRELKGAKLVIDVIRYEPPHI 605


>gi|237649128 N-acetyltransferase 1 isoform a [Homo sapiens]
          Length = 290

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 24  GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
           G Y+   PA+K    + G  H+L+ V +D        G   S    QPLE++  +D+ Q+
Sbjct: 90  GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146


>gi|237649126 N-acetyltransferase 1 isoform a [Homo sapiens]
          Length = 290

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 24  GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
           G Y+   PA+K    + G  H+L+ V +D        G   S    QPLE++  +D+ Q+
Sbjct: 90  GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146


>gi|237649124 N-acetyltransferase 1 isoform a [Homo sapiens]
          Length = 290

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 24  GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
           G Y+   PA+K    + G  H+L+ V +D        G   S    QPLE++  +D+ Q+
Sbjct: 90  GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146


>gi|237649122 N-acetyltransferase 1 isoform a [Homo sapiens]
          Length = 290

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 24  GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
           G Y+   PA+K    + G  H+L+ V +D        G   S    QPLE++  +D+ Q+
Sbjct: 90  GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146


>gi|237649119 N-acetyltransferase 1 isoform a [Homo sapiens]
          Length = 290

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 24  GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
           G Y+   PA+K    + G  H+L+ V +D        G   S    QPLE++  +D+ Q+
Sbjct: 90  GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146


>gi|42741671 N-acetyltransferase 1 isoform a [Homo sapiens]
          Length = 290

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 24  GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
           G Y+   PA+K    + G  H+L+ V +D        G   S    QPLE++  +D+ Q+
Sbjct: 90  GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146


>gi|237649132 N-acetyltransferase 1 isoform b [Homo sapiens]
          Length = 352

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 24  GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
           G Y+   PA+K    + G  H+L+ V +D        G   S    QPLE++  +D+ Q+
Sbjct: 152 GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 208


>gi|237649130 N-acetyltransferase 1 isoform b [Homo sapiens]
          Length = 352

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 24  GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
           G Y+   PA+K    + G  H+L+ V +D        G   S    QPLE++  +D+ Q+
Sbjct: 152 GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 208


>gi|4885237 forkhead box C2 [Homo sapiens]
          Length = 501

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 20/107 (18%)

Query: 9   WGDCCVDGSPRSFIGGAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSR 68
           +G  C  G      GG Y     A  L      P H+ V   +D     H  G  + LS 
Sbjct: 313 YGQPCAQGLEAGAAGG-YQCSMRAMSLYTGAERPAHMCVPPALDEALSDHPSGPTSPLSA 371

Query: 69  QQPLEVVGEQDKGQLALGVGCVGSICTCGH-----GHVYTQPPPLDP 110
                         L L  G  G++   GH     GH + Q PP  P
Sbjct: 372 --------------LNLAAGQEGALAATGHHHQHHGHHHPQAPPPPP 404


>gi|237649009 N-acetyltransferase 1 isoform a [Homo sapiens]
          Length = 290

 Score = 28.1 bits (61), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 24  GAYLEKQPAEKLLRQTGGPEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQL 83
           G Y+   PA+K    + G  H+L+ V +D        G   S    QPLE++  +D+ Q+
Sbjct: 90  GGYVYSTPAKKY---STGMIHLLLQVTIDGRNYIVDAGFGRSYQMWQPLELISGKDQPQV 146


>gi|108773804 Fraser syndrome 1 [Homo sapiens]
          Length = 4011

 Score = 26.9 bits (58), Expect = 4.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 92  SICTCGHGHVYTQPPPLDP 110
           S+C+C HG V   P P  P
Sbjct: 114 SVCSCNHGEVRCTPQPCPP 132


>gi|14589891 cadherin 3, type 1 preproprotein [Homo sapiens]
          Length = 829

 Score = 26.2 bits (56), Expect = 7.2
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 92  SICTCGHGHVYTQPPPLDPCVIMPSVG 118
           ++C C HGHV T P P     I+P +G
Sbjct: 636 TVCDC-HGHVETCPGPWKGGFILPVLG 661


>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
          Length = 1378

 Score = 25.8 bits (55), Expect = 9.4
 Identities = 20/75 (26%), Positives = 28/75 (37%)

Query: 42   PEHVLVDVRVDHPGVHHVGGHVASLSRQQPLEVVGEQDKGQLALGVGCVGSICTCGHGHV 101
            P   L+D+  +H G   +      L  Q  L+ + E D     LG GC  S+ +  H   
Sbjct: 1098 PSLALLDLSSNHLGPEGLRQLAMGLPGQATLQSLEELDLSMNPLGDGCGQSLASLLHACP 1157

Query: 102  YTQPPPLDPCVIMPS 116
                  L  C   PS
Sbjct: 1158 LLSTLRLQACGFGPS 1172


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.141    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,371,801
Number of Sequences: 37866
Number of extensions: 308695
Number of successful extensions: 520
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 20
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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