BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239746289 PREDICTED: hypothetical protein XP_002343688 [Homo sapiens] (85 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239757293 PREDICTED: hypothetical protein XP_002345244 [Homo ... 169 4e-43 gi|239751798 PREDICTED: hypothetical protein XP_002347989 [Homo ... 169 4e-43 gi|239746289 PREDICTED: hypothetical protein XP_002343688 [Homo ... 169 4e-43 gi|66363688 NEDD8 activating enzyme E1 subunit 1 isoform c [Homo... 29 0.91 gi|66363686 NEDD8 activating enzyme E1 subunit 1 isoform b [Homo... 29 0.91 gi|4502169 NEDD8 activating enzyme E1 subunit 1 isoform a [Homo ... 29 0.91 gi|29550850 golgi membrane protein 1 [Homo sapiens] 27 2.7 gi|29550838 golgi membrane protein 1 [Homo sapiens] 27 2.7 gi|21361684 G patch domain containing 1 [Homo sapiens] 27 3.5 gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens] 27 4.5 gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 26 5.9 gi|38176300 nestin [Homo sapiens] 26 7.7 gi|4507205 serum response factor (c-fos serum response element-b... 26 7.7 gi|4506321 protein tyrosine phosphatase, receptor type, N precur... 26 7.7 >gi|239757293 PREDICTED: hypothetical protein XP_002345244 [Homo sapiens] Length = 85 Score = 169 bits (428), Expect = 4e-43 Identities = 85/85 (100%), Positives = 85/85 (100%) Query: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE Sbjct: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60 Query: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85 DAAAVGGHIAGFVQEVRQAAAGCVH Sbjct: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85 >gi|239751798 PREDICTED: hypothetical protein XP_002347989 [Homo sapiens] Length = 85 Score = 169 bits (428), Expect = 4e-43 Identities = 85/85 (100%), Positives = 85/85 (100%) Query: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE Sbjct: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60 Query: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85 DAAAVGGHIAGFVQEVRQAAAGCVH Sbjct: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85 >gi|239746289 PREDICTED: hypothetical protein XP_002343688 [Homo sapiens] Length = 85 Score = 169 bits (428), Expect = 4e-43 Identities = 85/85 (100%), Positives = 85/85 (100%) Query: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE Sbjct: 1 MQRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEE 60 Query: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85 DAAAVGGHIAGFVQEVRQAAAGCVH Sbjct: 61 DAAAVGGHIAGFVQEVRQAAAGCVH 85 >gi|66363688 NEDD8 activating enzyme E1 subunit 1 isoform c [Homo sapiens] Length = 445 Score = 28.9 bits (63), Expect = 0.91 Identities = 12/22 (54%), Positives = 17/22 (77%) Query: 58 AEEDAAAVGGHIAGFVQEVRQA 79 A++DAAAVG H+A +Q + QA Sbjct: 261 AKKDAAAVGNHVAKLLQSIGQA 282 >gi|66363686 NEDD8 activating enzyme E1 subunit 1 isoform b [Homo sapiens] Length = 528 Score = 28.9 bits (63), Expect = 0.91 Identities = 12/22 (54%), Positives = 17/22 (77%) Query: 58 AEEDAAAVGGHIAGFVQEVRQA 79 A++DAAAVG H+A +Q + QA Sbjct: 344 AKKDAAAVGNHVAKLLQSIGQA 365 >gi|4502169 NEDD8 activating enzyme E1 subunit 1 isoform a [Homo sapiens] Length = 534 Score = 28.9 bits (63), Expect = 0.91 Identities = 12/22 (54%), Positives = 17/22 (77%) Query: 58 AEEDAAAVGGHIAGFVQEVRQA 79 A++DAAAVG H+A +Q + QA Sbjct: 350 AKKDAAAVGNHVAKLLQSIGQA 371 >gi|29550850 golgi membrane protein 1 [Homo sapiens] Length = 401 Score = 27.3 bits (59), Expect = 2.7 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%) Query: 2 QRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEED 61 QRD LP+E G E +V RP+G + G + ELG+ QV L E + Sbjct: 266 QRDRLPQEPGREQVVE-----DRPVGGRGFGG----AGELGQTPQVQAALSVSQENPEME 316 Query: 62 AAAVGGHIAGFVQEVRQAAAG 82 + QE Q AAG Sbjct: 317 GPERDQLVIPDGQEEEQEAAG 337 >gi|29550838 golgi membrane protein 1 [Homo sapiens] Length = 401 Score = 27.3 bits (59), Expect = 2.7 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%) Query: 2 QRDILPEEVGGEPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEED 61 QRD LP+E G E +V RP+G + G + ELG+ QV L E + Sbjct: 266 QRDRLPQEPGREQVVE-----DRPVGGRGFGG----AGELGQTPQVQAALSVSQENPEME 316 Query: 62 AAAVGGHIAGFVQEVRQAAAG 82 + QE Q AAG Sbjct: 317 GPERDQLVIPDGQEEEQEAAG 337 >gi|21361684 G patch domain containing 1 [Homo sapiens] Length = 931 Score = 26.9 bits (58), Expect = 3.5 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 7 PEEVGGEPLVALKEEY-PRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEEDAAAV 65 P + PLV +EE+ P NQ VD AE GEGS+ + L + + + D + Sbjct: 709 PPKQQSSPLVNKEEEHAPELSANQTVNKDVDAQAE-GEGSRPSMDLFRAIFASSSDEKSS 767 Query: 66 GGHIAGFVQEVRQAAAG 82 E QA +G Sbjct: 768 SSEDEQGDSEDDQAGSG 784 >gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens] Length = 2390 Score = 26.6 bits (57), Expect = 4.5 Identities = 14/49 (28%), Positives = 22/49 (44%) Query: 34 VVDQSAELGEGSQVGLQLGQVVAGAEEDAAAVGGHIAGFVQEVRQAAAG 82 V++ + LG L L + +AG E D A+ + +E AAG Sbjct: 980 VIESTQGLGNDLAGVLALQRKLAGTERDLEAIAARVGELTREANALAAG 1028 >gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] Length = 1711 Score = 26.2 bits (56), Expect = 5.9 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 13 EPLVALKEEYPRPIGNQQALGVVDQSAELGEGSQVGLQLGQVVAGAEEDAAAV 65 +P + L + PR + Q+ + ++DQ G G+ G + Q AGAE + V Sbjct: 733 DPNLGLNRD-PRHLPKQEPISIIDQGEPKGTGATCGKKGSQ--AGAEGQPSTV 782 >gi|38176300 nestin [Homo sapiens] Length = 1621 Score = 25.8 bits (55), Expect = 7.7 Identities = 11/23 (47%), Positives = 16/23 (69%) Query: 7 PEEVGGEPLVALKEEYPRPIGNQ 29 PE+V EPL +L +E RP+ N+ Sbjct: 780 PEKVDLEPLKSLDQEIARPLENE 802 >gi|4507205 serum response factor (c-fos serum response element-binding transcription factor) [Homo sapiens] Length = 508 Score = 25.8 bits (55), Expect = 7.7 Identities = 10/20 (50%), Positives = 14/20 (70%) Query: 49 LQLGQVVAGAEEDAAAVGGH 68 +++G VV G E AAA GG+ Sbjct: 105 MEIGMVVGGPEASAAATGGY 124 >gi|4506321 protein tyrosine phosphatase, receptor type, N precursor [Homo sapiens] Length = 979 Score = 25.8 bits (55), Expect = 7.7 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%) Query: 28 NQQALGVVDQSAELGE-----GSQVGLQLGQVVAGAEEDAAAV 65 N+Q L + D + + G +Q GLQ+ Q G E+AAAV Sbjct: 521 NEQNLSLADVTQQAGLVKSELEAQTGLQILQTGVGQREEAAAV 563 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.313 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,163,887 Number of Sequences: 37866 Number of extensions: 123140 Number of successful extensions: 259 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 250 Number of HSP's gapped (non-prelim): 14 length of query: 85 length of database: 18,247,518 effective HSP length: 57 effective length of query: 28 effective length of database: 16,089,156 effective search space: 450496368 effective search space used: 450496368 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.