Guide to the Human Genome
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Name: TLCD2 Sequence: fasta or formatted (264aa) NCBI GI: 239745670
Description:

PREDICTED: TLC domain containing 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {264aa} PREDICTED: hypothetical protein
alt mRNA {264aa} PREDICTED: TLC domain containing 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         22           2
 C cysteine            1.5          4           1
 D aspartate           3.0          8           1
 E glutamate           1.1          3           1
 F phenylalanine       2.7          7           1
 G glycine             8.3         22           2
 H histidine           4.5         12           2
 I isoleucine          2.7          7           2
 K lysine              1.5          4           1
 L leucine            19.7         52           4
 M methionine          1.9          5           1
 N asparagine          2.3          6           1
 P proline             5.3         14           2
 Q glutamine           2.7          7           1
 R arginine            6.1         16           2
 S serine              9.8         26           2
 T threonine           5.7         15           1
 V valine              8.0         21           3
 W tryptophan          3.8         10           2
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: TLC domain containing 2 
TLCD2                 1.000   PREDICTED: TLC domain containing 2 
TLCD2                 1.000   PREDICTED: hypothetical protein 
TLCD1                 0.159   TLC domain containing 1 isoform 1 
TLCD1                 0.092   TLC domain containing 1 isoform 2 
CLN8                  0.039   ceroid-lipofuscinosis, neuronal 8 
TMEM56                0.027   transmembrane protein 56 
TAS2R20               0.014   taste receptor, type 2, member 20 
SLC39A5               0.014   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.014   solute carrier family 39 (metal ion transporter), m...
TAS2R46               0.014   taste receptor, type 2, member 46 
PDE3A                 0.012   phosphodiesterase 3A 
TMEM170A              0.012   transmembrane protein 170A 
ND4                   0.010   NADH dehydrogenase subunit 4 
ND4                   0.010   NADH dehydrogenase subunit 4 
KCNK7                 0.010   potassium channel, subfamily K, member 7 isoform C [H...
KCNK7                 0.010   potassium channel, subfamily K, member 7 isoform A [...
KCNK7                 0.010   potassium channel, subfamily K, member 7 isoform B [...
KCNK7                 0.010   potassium channel, subfamily K, member 7 isoform B [...
LOC100291890          0.010   PREDICTED: hypothetical protein XP_002344521 
LOC100289901          0.010   PREDICTED: hypothetical protein XP_002347167 
LOC100288618          0.010   PREDICTED: hypothetical protein XP_002344285 
TAS2R19               0.006   taste receptor, type 2, member 19 
TAS2R45               0.006   taste receptor, type 2, member 45 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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